mRNA_L-elsbetiae_contig6601.15324.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6601.15324.1
Unique NamemRNA_L-elsbetiae_contig6601.15324.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6601.15324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6601contigL-elsbetiae_contig6601:2951..7433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size594
Cds size594
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6601.15324.1prot_L-elsbetiae_contig6601.15324.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6601 2951..7433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.8037195-CDS-L-elsbetiae_contig6601:2950..30311622816730.8037195-CDS-L-elsbetiae_contig6601:2950..3031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6601 2951..3031 -
1691683771.2666848-CDS-L-elsbetiae_contig6601:2950..30311691683771.2666848-CDS-L-elsbetiae_contig6601:2950..3031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6601 2951..3031 -
1622816730.816723-CDS-L-elsbetiae_contig6601:3774..38731622816730.816723-CDS-L-elsbetiae_contig6601:3774..3873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6601 3775..3873 -
1691683771.2758756-CDS-L-elsbetiae_contig6601:3774..38731691683771.2758756-CDS-L-elsbetiae_contig6601:3774..3873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6601 3775..3873 -
1622816730.827484-CDS-L-elsbetiae_contig6601:4660..48531622816730.827484-CDS-L-elsbetiae_contig6601:4660..4853Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6601 4661..4853 -
1691683771.2842727-CDS-L-elsbetiae_contig6601:4660..48531691683771.2842727-CDS-L-elsbetiae_contig6601:4660..4853Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6601 4661..4853 -
1622816730.841919-CDS-L-elsbetiae_contig6601:6349..64861622816730.841919-CDS-L-elsbetiae_contig6601:6349..6486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6601 6350..6486 -
1691683771.2923343-CDS-L-elsbetiae_contig6601:6349..64861691683771.2923343-CDS-L-elsbetiae_contig6601:6349..6486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6601 6350..6486 -
1622816730.8521976-CDS-L-elsbetiae_contig6601:7349..74331622816730.8521976-CDS-L-elsbetiae_contig6601:7349..7433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6601 7350..7433 -
1691683771.3002183-CDS-L-elsbetiae_contig6601:7349..74331691683771.3002183-CDS-L-elsbetiae_contig6601:7349..7433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6601 7350..7433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6601.15324.1

>prot_L-elsbetiae_contig6601.15324.1 ID=prot_L-elsbetiae_contig6601.15324.1|Name=mRNA_L-elsbetiae_contig6601.15324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
LARVVEDASALEAAGRRREQAVLEGHRRMDREKRRLEVQAAAAAEGLRAQ
LSEARTELESLREALLQSNAEFRSEATKAAGLKKEALSLGETVKRVEEGL
RDRDRLLAAASRRAAEVGEEVGLLRERLRAAKEEAAEKELEAGSRLHEEE
LALEAEAAQTLHLTAKLDEANAKIAALHERVAGITAAAEVDRKRAEDT
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mRNA from alignment at L-elsbetiae_contig6601:2951..7433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6601.15324.1 ID=mRNA_L-elsbetiae_contig6601.15324.1|Name=mRNA_L-elsbetiae_contig6601.15324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4483bp|location=Sequence derived from alignment at L-elsbetiae_contig6601:2951..7433- (Laminarionema elsbetiae ELsaHSoW15)
CTCGCGCGAGTCGTCGAGGACGCGTCCGCCCTGGAAGCCGCCGGTCGGAG
GCGAGAGCAAGCCGTCCTCGAGGGGCACCGGAGGGTGAGTGACGGCTCGG
CGGCGGCAGCCGAGATCGATCCAGTAACCGTCGGAGGATGAGCTCTGCTG
GGTAGCGAGACACGCAGGAAACAAGCTGGTGATACACATGTGACCCCGGT
TGGGTCGTCCAGCTATGTAGTCGTAGTGGAGGAAGGGGGGCAGTGTGGCT
GGCAGACGACGAATAAGCCAATAGTGGGAGGAAAAAAGTAAAATAAAATA
AGAATAAGAGTATCGCTGAGGGGGGTTGTTGTTGTTGTTGTTGTTGTCGT
TGTTGTTGATTCTCACATTAGCTCTCTTGTCCAAAAGTATCCTTGGGGGG
GCCGTGGTCGCAAAATAAGGCAGGCACACTCGACGCCGCGAAAGAAAAAT
AGGAAGGCACGGGAACACCTGAAGCAGCAAGCAAGCGGCCGCCTTGAGAT
TAGCATCGGCGTGGTAGGTAGACTACTGTTCGGCGGGGCTTTGTGTTGGC
TTCGTGGGGCACGAGCGCGCGCCCGGGAGTGGTGTTTGATTTAGCGAGAA
GGCAAACGGTGCTTAAAATGTAGGTGGCGCGGGGCTACGCACGGCGAGAC
AGTCACCAGCCGCGAGTCTACGTGTGCTTGCACTGCACGCCATCTAGACT
AGGTAGTAGGCGACCCCGGCAGCGCAAACCCTTGAGAGAACGAGAGAGAC
CGAGCGCCTCAAAAAGGAAAAAAAAAAAAACAGACGGGGCTGCAAACAGC
ACGTCTGTGTATCCTATCCATTCGGTTGTTTCTTCCCCATGGACACTCTT
CAGAAACACTCTCTGCGCATGCATGCATGCGTGTATGTGCGCCCCAATAC
CACGTTGCTGTGCCGGCGTGTGTGCAACCTGGCCATACTGCTCATAGATG
GATCGCGAGAAGAGAAGGCTAGAGGTACAGGCAGCAGCGGCTGCGGAGGG
GTTACGAGCGCAGCTCTCGGAGGCGAGGACGGAGCTAGAAAGCCTGAGGG
AGGCGCTGCTGCAGAGCAACGCAGAATTTCGCAGGTGGGTGCTGGTGCTG
GTGTTGGTGCTGGTGCCGGTGCTGGTGCTGGTGCTGGCGCTGGTGCTGGT
GTGTTGATTCTGGATGTGATGCTGACGCTGCTGGCGATCGCTACGCGGGT
ATGCATATCTACGCCCCGACACATCCCGCTCGTGCGCTCCCCGCATGTGG
AAAAACGAGTGCGCCATGTATTGCCGGGTTAGTTTTACCCGTAGCGCCAG
GGAGGGAAGATGAAAATGGAATGAGCGCGTTTCATGGTGACCCCGGTTGG
GTCGTCTAGCTAGCCGTAGTGGAGGAAGGGGGCCAGTGGGGCAGACGACG
AATACGCCAATAATGGGAGGAAAAAACAAAAATAAAATGTGCGCTATGTG
GGGATTTTTTGTTCTTCAAGTCTCGATGACGTTATCGTGGGTCGCTGTGT
GGTGTTACACGCCAAGGGGTATAGAACTGCACCGGGAGGAAAAAACCCGC
TCGCCTCAGAAAGATCTCAGTAGGGGATGTGCCTTGAGTGTCTGTCGCGC
ACAGTACAGAAGCAGGGAAGACACGAGAAGGCACGCAGACTGCAAAACCC
CACACCCATGCCCCCCCTCGTTTCATTTTTTTCCTAGGGATTTGTACGGA
GGGACCCGTCGGGATATTTCACTCGTAGCGACCCCCCTTAATAATCTAGG
CTGCCTTCCCCCCGAAAATCCGAATATAACAATTAAAAGTTGTTATTCTC
CCCCCCCCTTCCTCCGATTCTGGATTAAACCAGTTTGTCGGCATAGGTGT
TGGGTTCTGCCATCTGTGTGCCCTCTTGAAGTGCGAAACCACATGAAAGA
CTCGGTCGGATCTCTCGGCTCTTCTCTTTCGTCGACACCCTTTTTGTTGT
GCGACAAGTTTGTTTGCGTGAGACGCCCCCCGTGTCCGCTCTCGCGTTGG
CATGCAATATCGCATTGCGTTGCATTGCATTGCATTGCATTGCATTGCAT
TGCATTGCATTGCATTGCATTGCATTGCATTGCATTGCATTGCATTGCAT
TAAATTGCATTGCATTGCATTAAATTGCATTCCCTTCGGGTCCATTTTAT
TTCTTTTCGTTTTTCAGTAGTCTATACCCTTGTTTTAGGGTAAGTTATCC
TGTGACCACGGGAATCGACCGCGTCAGTGGTGGACTAGTACGGACTCATG
GAGGTGAACTGGATAGAGAGATCGGAACAGTTTTTAATGTGAATACAACA
CACACACACACATTGCATTGCAGTGTGAGCCAGGCGCTGGCTGACTGCAA
TGGCCAATGCCTTGATTTCGTACTCCCAATCTCCACGAAATACACGCGTA
GTAGTATTATTGCAATTATTATTTCTCGGTTACAGCTGTTGCAATACAAA
AATTGAGTACTAGATATGTACATTTCCGACAATATTTTCACCGCTTCAAG
TCAACATTGAAGCGACAGTACTGCCCCAAGCTTAGCTGGTTTTGGACTCG
ATCTGTTATGTATACGCATGCACATGGCAGCGAGGCCACCAAAGCAGCCG
GTCTGAAGAAGGAGGCGTTATCTCTAGGCGAAACCGTCAAACGAGTCGAG
GAGGGGCTCCGGGACCGCGACCGCTTGCTAGCGGCGGCAAGTCGCAGGGC
GGCGGAGGTTGGGGAGGAGGTGGGGCTGCTTCGGGAGCGTCTTCGAGCAG
CAAAGGAGGAGGCCGCTGAGAAGGTGGGCTTACCGTAGGTGACACAAGAT
ACCACCCCCCCCCTGGGGCAGATTTTGAAAGCTCGATTCCTCCCTCCCCA
GCAAGAAGAGTGACAGTGCCAAAAGGGGGTGGTGTTGGATAGATCTAGTC
CGGGGCTGTCCGAAAATGTGTCGTTTGGTGCTGGCACCCTCTTCTTTACG
GAGTAATCGAGCTTTGAAAATATGTCCGGGGGGGTGGTATCTTGTGTCAT
CTACGGTAACCACGAGCGATGAGACGAGAGAGCCATACGCTTCCCTTCCT
CTGATGCTGTCCTCTTTGGGACTCGCGGTTTCTCTCATCTCCTCTGCGGC
CGCGTCTTCTTGGTTCCTTCGTGTGCTGTGCTGTGCTGTGCTGTGCCGCT
TGTTTGTTGTTGACAGTCCCGTAACAGTTCCGTTGCTGTTGTTGTTGCTG
TTGCTGCTGCTGTTGCTGTTGTTGATGCTGTTGCTGTTGCTGTTGCTAGT
GCTGTTGCTCTTGCTCTTGCTGTTACTGTTGCTCTTCCTGCGCATGGTTG
AGCCGACGCGAGAGGTGTTTGCGTTCGCGATTATTGGGTTCGGCGATGCT
CCTGCGATGGTGCTGCTAAATAGCTGTTATCACGGTGCCGCCGCCGCCGT
CGTTATGTTTGGAAAATATGCAGGTTAGAGGTTTCTTTTTCTGCGGTTGA
CATTGGACTACTAGATATTCCCGGGATTCACGGGTGCTTGCATTCTCTGA
CGGAATACCACGGTACCCCCCCCCCTCTTGCCCCCGTGCCCCTTGACCCT
CCCCTCTCAGGAGCTAGAGGCCGGTAGCAGGCTTCACGAGGAAGAACTGG
CCCTAGAGGCCGAGGCAGCTCAGACTTTGCACCTCACCGCTAAGCTGGAC
GAAGCAAACGTAAGGCGCAGCATGCATACCACTGCGCGTTTCTCCCTCTC
TTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTAGCACACA
CCTGTTCTGGTCTTGAATATCACGTTCATATCGTGGTGCTGGTGGCGCCG
TCTGTCGGAGGATTCAATGCTTGCAGCACGTAGTCGAGCGCTTTCTAGGG
AATCCAAGACGTGAACACATCCTGAAAACCGTCCCCAGGCATTCAAAGCG
TAAGAACATTATGATGGGACTCTGAAGGCATTCTGAATGCGCAGTACAAC
TACAAGCCCGCACATAGTACATTGAGTTGCTCGCCGCAACATGACTTGTT
CGAAAGTCCCTCTCCCCTCTCTCCTTTACCCACGCGCGATGACGTCGGTC
GAGTTTTCATGAACGGCTCCTCTCTCGGTGCGCTCTCGATCCTGCTGCGC
CCAGCCTTCCCGTCACGCCCCACCGTCCCGCCTACCCCAACCCCCGAAAT
AGTCCTCCTCTTGTGCGTTCAAACAACTCCATCGTCTGACGTCACTACTG
CTTTGGCGTCCTTCCCTCGCCCCTTCCTAATACCACACCCAAATACGCAT
TTGCTCTTGTACATCTGCCGGCCTTCTTATTTTCTCTCTCTCGCGCTCAC
CCCCCGCACCCCCCACCCTCCCCGTCTATTATGTTCCACCGTCTCCCCCC
GCCGGTTGTGGTTTGTCCTCAAAACTTGTACGATATGTACTACCTAAACC
AGGCCAAGATCGCTGCCTTGCACGAGCGTGTGGCTGGTATTACCGCCGCC
GCTGAGGTAGACCGCAAGCGTGCCGAAGACACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6601:2951..7433-

>mRNA_L-elsbetiae_contig6601.15324.1 ID=mRNA_L-elsbetiae_contig6601.15324.1|Name=mRNA_L-elsbetiae_contig6601.15324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig6601:2951..7433- (Laminarionema elsbetiae ELsaHSoW15)
CTCGCGCGAGTCGTCGAGGACGCGTCCGCCCTGGAAGCCGCCGGTCGGAG
GCGAGAGCAAGCCGTCCTCGAGGGGCACCGGAGGCTCGCGCGAGTCGTCG
AGGACGCGTCCGCCCTGGAAGCCGCCGGTCGGAGGCGAGAGCAAGCCGTC
CTCGAGGGGCACCGGAGGATGGATCGCGAGAAGAGAAGGCTAGAGGTACA
GGCAGCAGCGGCTGCGGAGGGGTTACGAGCGCAGCTCTCGGAGGCGAGGA
CGGAGCTAGAAAGCCTGAGGGAGGCGCTGCTGCAGAGCAACGCAGAATTT
CGCAGATGGATCGCGAGAAGAGAAGGCTAGAGGTACAGGCAGCAGCGGCT
GCGGAGGGGTTACGAGCGCAGCTCTCGGAGGCGAGGACGGAGCTAGAAAG
CCTGAGGGAGGCGCTGCTGCAGAGCAACGCAGAATTTCGCAGCGAGGCCA
CCAAAGCAGCCGGTCTGAAGAAGGAGGCGTTATCTCTAGGCGAAACCGTC
AAACGAGTCGAGGAGGGGCTCCGGGACCGCGACCGCTTGCTAGCGGCGGC
AAGTCGCAGGGCGGCGGAGGTTGGGGAGGAGGTGGGGCTGCTTCGGGAGC
GTCTTCGAGCAGCAAAGGAGGAGGCCGCTGAGAAGCGAGGCCACCAAAGC
AGCCGGTCTGAAGAAGGAGGCGTTATCTCTAGGCGAAACCGTCAAACGAG
TCGAGGAGGGGCTCCGGGACCGCGACCGCTTGCTAGCGGCGGCAAGTCGC
AGGGCGGCGGAGGTTGGGGAGGAGGTGGGGCTGCTTCGGGAGCGTCTTCG
AGCAGCAAAGGAGGAGGCCGCTGAGAAGGAGCTAGAGGCCGGTAGCAGGC
TTCACGAGGAAGAACTGGCCCTAGAGGCCGAGGCAGCTCAGACTTTGCAC
CTCACCGCTAAGCTGGACGAAGCAAACGAGCTAGAGGCCGGTAGCAGGCT
TCACGAGGAAGAACTGGCCCTAGAGGCCGAGGCAGCTCAGACTTTGCACC
TCACCGCTAAGCTGGACGAAGCAAACGCCAAGATCGCTGCCTTGCACGAG
CGTGTGGCTGGTATTACCGCCGCCGCTGAGGTAGACCGCAAGCGTGCCGA
AGACACCGCCAAGATCGCTGCCTTGCACGAGCGTGTGGCTGGTATTACCG
CCGCCGCTGAGGTAGACCGCAAGCGTGCCGAAGACACC
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