mRNA_L-elsbetiae_contig66.15316.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig66.15316.1
Unique NamemRNA_L-elsbetiae_contig66.15316.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig66.15316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig66contigL-elsbetiae_contig66:39602..41003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size319
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.2557225-CDS-L-elsbetiae_contig66:39602..397271622816729.2557225-CDS-L-elsbetiae_contig66:39602..39727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig66 39603..39727 -
1691683770.3379118-CDS-L-elsbetiae_contig66:39602..397271691683770.3379118-CDS-L-elsbetiae_contig66:39602..39727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig66 39603..39727 -
1622816729.2674587-CDS-L-elsbetiae_contig66:40810..410031622816729.2674587-CDS-L-elsbetiae_contig66:40810..41003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig66 40811..41003 -
1691683770.3569427-CDS-L-elsbetiae_contig66:40810..410031691683770.3569427-CDS-L-elsbetiae_contig66:40810..41003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig66 40811..41003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig66.15316.1prot_L-elsbetiae_contig66.15316.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig66 39603..41003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig66.15316.1

>prot_L-elsbetiae_contig66.15316.1 ID=prot_L-elsbetiae_contig66.15316.1|Name=mRNA_L-elsbetiae_contig66.15316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
VYLAEAGARAKSLEEASERARGEAAEWLALTGDTAKTARDTADKDRADAS
SWLRDTGTRALSLKGKGTSQEEAAEWLCDIGRRVKSAQGRADKARADASS
WLGDKG
back to top

mRNA from alignment at L-elsbetiae_contig66:39602..41003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig66.15316.1 ID=mRNA_L-elsbetiae_contig66.15316.1|Name=mRNA_L-elsbetiae_contig66.15316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1402bp|location=Sequence derived from alignment at L-elsbetiae_contig66:39602..41003- (Laminarionema elsbetiae ELsaHSoW15)
GTTTACCTGGCGGAAGCAGGAGCGCGAGCAAAGTCTTTGGAGGAGGCTTC
TGAAAGGGCTAGAGGCGAAGCCGCAGAATGGCTTGCCCTTACAGGAGACA
CCGCAAAGACCGCCCGAGATACCGCAGACAAAGATCGCGCCGATGCGTCG
TCGTGGCTGAGAGACACGGGCACCAGGGCGCTATCTTTGAAAGGTAGGCG
GCGAGAGGATTGTAGAGCCTTTTCTTTTTCGGCGCGGGGGTGGGGGTGGC
GGGTACTGTTTTAGGCTGTTTTGGTCATTGTGAACAACTGAGAGAACCTT
TGCACCTTTTCCTCGTGGCTACTTCGAACCCGGAGCTGTATTGTTTGAAC
GATTCAACGTCAACACGCTCAGGGAACGTTTAACTTCCTTCTTCCCGTTT
CCACTCAATACAGTACCGGTCCGATCATAAGAAACTGAAATTTCGGCCGA
GGCTGAGTTTCTTGGTGTGGTTAGGATTTAGTGTAGCACTCGCCACGGAG
CCTCCGTTTCTGGTAAATCTAGGCTGGGTTTCTTATGAGTGAGTTTCTTA
TGAGCGGGCCGGTACTGTATGGCACCCATTCCTTTCGTTGCCACCAACCA
CGACTTGTCGCCACTTTCTGGCGCTCTCCGCCGCCTCTAAACAACGGAAA
CGTGCTTGATGCGTCTGTTTCCACTCGACCCACTCCGGAGACTCCTGCGA
AACTATCAATCTGGACACAACCATTGCTCCCACCTTGACTCCTTGCTTCG
TCTGTGGCTACCAGGAAGCCATGCTGCGTTTAAAGTATTGACAGACACTC
GCGTGTATGCGCGAAGTACAGCCCTGGTTTCGCAAATATCCACCAATGTC
TGTCCGTATAACACTAGAAAACAATCGGTGCAATAATGCACGAACCCAAT
TGGTATTAAATGTTCCCTTCCTTTTGTTGTACTTCTACATATGTACCTTT
CACGAGCCATCCGCCAAACATGCTCACATATTTTGGTTCCTACATACAAC
TGCCCTTCCTCTGGCGTTACCTTTGATCCCACGAGCCCACCCGGAAACAA
CCAGTCTAGACAAACTTTTCTTTCTCCGGCCTCGATATTTCGTTTGACCG
ACTGCACTTCCGCCCGTGACGAAAACTTCCCCGTGTACTCTTATGTCCTG
CACCATGCTCAAGGTTTGGCCATTGTCCGTACACAGAATAGTAGACGGCG
CACGATCTCCGATGCTGATTCCCCAACATCGTGAAACGTGTATCAGATTC
TGCCGTTTCCACCCGTACTTTGCAAGGGAAAGGGACCAGCCAGGAGGAAG
CCGCGGAGTGGCTCTGCGATATCGGGAGAAGGGTAAAGTCCGCCCAAGGG
CGCGCAGACAAAGCTCGCGCTGATGCTTCTTCGTGGCTTGGAGACAAGGG
GT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig66:39602..41003-

>mRNA_L-elsbetiae_contig66.15316.1 ID=mRNA_L-elsbetiae_contig66.15316.1|Name=mRNA_L-elsbetiae_contig66.15316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig66:39602..41003- (Laminarionema elsbetiae ELsaHSoW15)
GTTTACCTGGCGGAAGCAGGAGCGCGAGCAAAGTCTTTGGAGGAGGCTTC
TGAAAGGGCTAGAGGCGAAGCCGCAGAATGGCTTGCCCTTACAGGAGACA
CCGCAAAGACCGCCCGAGATACCGCAGACAAAGATCGCGCCGATGCGTCG
TCGTGGCTGAGAGACACGGGCACCAGGGCGCTATCTTTGAAAGGTTTACC
TGGCGGAAGCAGGAGCGCGAGCAAAGTCTTTGGAGGAGGCTTCTGAAAGG
GCTAGAGGCGAAGCCGCAGAATGGCTTGCCCTTACAGGAGACACCGCAAA
GACCGCCCGAGATACCGCAGACAAAGATCGCGCCGATGCGTCGTCGTGGC
TGAGAGACACGGGCACCAGGGCGCTATCTTTGAAAGGGAAAGGGACCAGC
CAGGAGGAAGCCGCGGAGTGGCTCTGCGATATCGGGAGAAGGGTAAAGTC
CGCCCAAGGGCGCGCAGACAAAGCTCGCGCTGATGCTTCTTCGTGGCTTG
GAGACAAGGGGGGAAAGGGACCAGCCAGGAGGAAGCCGCGGAGTGGCTCT
GCGATATCGGGAGAAGGGTAAAGTCCGCCCAAGGGCGCGCAGACAAAGCT
CGCGCTGATGCTTCTTCGTGGCTTGGAGACAAGGGG
back to top