mRNA_L-elsbetiae_contig6599.15307.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6599.15307.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE) HSP 1 Score: 118 bits (296), Expect = 1.410e-26 Identity = 81/226 (35.84%), Postives = 110/226 (48.67%), Query Frame = 1 Query: 4 GVSDTQMESMVFAAFAVANVGFADSEIG-IDLTIVHQTKLPYEEG--NAVTSE------KLTFLRENEEALAIRNEYGADLVVLIGELNDVCGQASFLPDTLPEHAEFAYSAASPNCLYTLVLGHEIGHNLGCIHNREDSYRQFEYAHGRRICPDEVQTSVGFSTIMSYQDS--------MSPCFTSRVNMYSNPNVTYLGMPTGTETENCARAIEVNKVVVSNFR 630 G+SD Q+ + + N +S I ++ +VH +LPY + + + S+ +L L N +RNEY DLV L+G CG L +AEF +S NC HEI HN+GC H+R++S Q EY HG R C S + TIMSY + + +VN +SNP VTYL PTGT T + AR IE + V VSNFR Sbjct: 367 GISDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYSQMTYDPIDSDDIDLEPELDALAANSAVNDLRNEYQGDLVQLVGYFPGTCG----LGYIFNGNAEFGFSLVGSNCFDNFSHTHEIAHNMGCYHDRDNSETQDEYRHGYRYCTG----SDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTGTATADNARCIEESMVAVSNFR 584
BLAST of mRNA_L-elsbetiae_contig6599.15307.1 vs. uniprot
Match: A0A521WJ12_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521WJ12_9GAMM) HSP 1 Score: 112 bits (281), Expect = 1.040e-24 Identity = 76/217 (35.02%), Postives = 114/217 (52.53%), Query Frame = 1 Query: 22 MESMVFAAFAVANVGFADSEIGIDLTIVHQTKLPYEEGNAVTSEKLTFLREN-----EEALAIRNEYGADLVVLIGELNDVCGQASFLPDTLPEHAEFAYSAASPNCLYTLVLGHEIGHNLGCIHNREDSYRQ--FEYAHGRRICPDEVQTSVGFSTIMSYQDSMSPCFTSRVNMYSNPNVTYLGMPTGTETEN-------CARAIEVNKVVVSNFR 630 +ES + +A A AN +A+S + + L +VH + Y E + + L+ LR+N +EA A+R+ +GADLV L+ E + CG A + A A+S + NCL L HE+GHN G +H+R++S + Y++G R C V GF T+MSY + +P RVN +SNP V Y G TG E AR++ V++FR Sbjct: 197 VESRILSAIAAANQAYANSGLALSLNLVHMAETQYVETGDM-GQALSALRQNGDGQMDEAHALRDLHGADLVALVNEDGNYCGIAYVMTSVSTGFASSAFSVTASNCLSGQTLAHEVGHNQGNMHDRDNSSNAGAYPYSYGYRRC---VADGTGFRTVMSYSCTGAP----RVNHFSNPAVLYSGYATGIAYETDPAASAEAARSMGNTAPTVASFR 405
BLAST of mRNA_L-elsbetiae_contig6599.15307.1 vs. uniprot
Match: D8LC56_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC56_ECTSI) HSP 1 Score: 108 bits (269), Expect = 1.850e-23 Identity = 72/203 (35.47%), Postives = 105/203 (51.72%), Query Frame = 1 Query: 4 GVSDTQMESMVFAAFAVANVGFADSEIGIDLTIVHQTKLPYEEGNAVTSEKLTFLRENEEALAIRNEYGADLVVLIGELNDVCGQASFLPDTLPEHAEFAYSAASPNCLYTLVLGHEIGHNLGCIHNRE-----DSYRQFEYAHGRRICPDEVQTSVGFSTIMSYQDSMSPCFTSRVNMYSNPNVTYLGMPTGTETENCARAI 597 G S QMES + A+ AN + S + + IVH + P++E +++ + + +++NE +R+EYGADLV LIG + CG + A++ YS NCL HE+GHN G HN+E D + YA+ R C EV T F TIM+Y T RVN++SNP++TY GTE + AR + Sbjct: 240 GRSIAQMESDIATAYQGANNALSASGVNFSVRIVHMEQAPFDESDSIVDD-VRAIQKNEGVHKLRDEYGADLVQLIGYYLNTCGVGFTMGSPSSGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENAGGSDGVDAYNYAY--RNC--EVGTK--FRTIMAYSSGCPS--TPRVNVFSNPDLTYANQRQGTENADNARVL 433
BLAST of mRNA_L-elsbetiae_contig6599.15307.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE) HSP 1 Score: 108 bits (271), Expect = 2.810e-23 Identity = 79/229 (34.50%), Postives = 106/229 (46.29%), Query Frame = 1 Query: 4 GVSDTQM-----ESMVFAAFAVANVGFADSEIGIDLTIVHQTKLPYEEGNAVTSE------KLTFLRENEEALAIRNEYGADLVVLIGELNDVCGQASFLPDTLPEHAEFAYSAASPNCLYTLVLGHEIGHNLGCIHNREDSYRQFEYAHGRRICPDEVQTSVGFSTIMSYQD--------SMSPCFTSRVNMYSNPNVTYLGMPTGTETENCARAIEVNKVVVSNFRD 633 G+++ Q+ E MV A+ N G A G++ +V +LPY + + S+ +L L N +RN+Y DLV L+G CG L A F +S NC HEI HN+GC H++ +S Q Y HG R C + + + TIMSY S RVN +SNPNVTYL TGT + AR IE + V VS FRD Sbjct: 189 GIAEAQLLTRIVEGMVTLNQAITNSGIA----GLEYRLVQVAELPYSQMAYIPSDDIDLKPELDALAANSNVTDLRNQYQGDLVQLVGYFPGTCG----LGYIFNGDAAFGFSLVDSNCFDNFSHTHEIAHNMGCYHDKNNSDTQHAYRHGWRYC----EGADPYRTIMSYYHNGCGGDPTSEDDPIVPRVNYFSNPNVTYLNKSTGTAAADNARCIEDSMVAVSEFRD 405
BLAST of mRNA_L-elsbetiae_contig6599.15307.1 vs. uniprot
Match: A0A2D7WNF1_9BACT (Cadherin domain-containing protein n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2D7WNF1_9BACT) HSP 1 Score: 108 bits (269), Expect = 5.620e-23 Identity = 80/226 (35.40%), Postives = 121/226 (53.54%), Query Frame = 1 Query: 16 TQMESMVFAAFAVANVGFADSEIGIDLTIVHQTKLPY-EEGNA-VTSEKLTFLREN--EEALAIRNEYGADLVVLIGELNDVCGQASFL--PDTLPEHAEFAYSAASPNCLYTLVLGHEIGHNLGCIHNREDSYRQFE--------YAHGRRICPDEVQTSVGFSTIMSYQDSMSPCFTSRVNMYSNPNVTYLGMPTGTE-TENCARAIEVNKVVVSNFRDKILDG 648 +Q + + A A AN+ F +S + + L +VH + Y GN + ++LT + +E +R++YGAD+V L+ ++ G A + P E + F + L HEIGHNLGC+HNRED E +A+G+R D S+G+ TIMSY DS + + V +SNPNV+YLG+PTG + TEN ARA+ ++ SNFR ++ G Sbjct: 169 SQTIAEIETAVADANLCFRNSLVELSLRLVHIAETSYVPSGNLDIDLDRLTEKNDGFLDEIHNLRDQYGADIVTLLSTDSNSGGLAKTMTFPSINFEKSAFNVCVWDQITAPSYTLAHEIGHNLGCLHNREDVTYPEESAGNDYGAFAYGKRWFED----SIGYRTIMSYNDSEGS-YQNSVPFFSNPNVSYLGVPTGNDGTENNARALSLSAPYASNFRKAVVQG 389
BLAST of mRNA_L-elsbetiae_contig6599.15307.1 vs. uniprot
Match: A0A839HE77_9GAMM (Fibronectin type III domain-containing protein n=1 Tax=Thiospirillum jenense TaxID=1653858 RepID=A0A839HE77_9GAMM) HSP 1 Score: 107 bits (268), Expect = 6.440e-23 Identity = 77/219 (35.16%), Postives = 110/219 (50.23%), Query Frame = 1 Query: 1 MGVSDTQMESMVFAAFAVANVGFADSEIGIDLTIVHQTKLPYEEGNAVTSEKLTFLRENEEAL-----AIRNEYGADLVVLIGELNDVCGQASFLPD--TLPEHAEFAYSAASPNCLYTLVLGHEIGHNLGCIHNRED--SYRQFEYAHGRRICPDEVQTSVGFSTIMSYQDSMSPCFTSRVNMYSNPNVTYLGMPTGTETENCARAIEVNKVVVSNFR 630 MG D ++S + AA A AN + +S+I + L V+ ++ Y E A LT L+ + + A+R++Y ADLVVL+ D CG + T A +A++ + +CL L HEIGH G HN E S + Y++G R+C F IMSY T RV +SNPNVTY G+ TG+ T N A+ I +V+NFR Sbjct: 294 MGTEDA-LKSTITAAIAAANTAYDNSQINVALNPVYYGQVNYTEP-ATMPTALTQLQSKTDGIIDDIHALRDQYSADLVVLVDTNTDYCGYGYIMNSSYTSSAFAPYAFAVVNYSCLSLNSLAHEIGHLQGNQHNTESTTSTGAYSYSYGYRVCGI-------FRDIMSYDCPTPNTGTPRVLHFSNPNVTYQGLATGSSTANAAQTINNTAAIVANFR 503
BLAST of mRNA_L-elsbetiae_contig6599.15307.1 vs. uniprot
Match: UPI00135B5B8B (M12 family metallo-peptidase n=1 Tax=Methylicorpusculum oleiharenae TaxID=1338687 RepID=UPI00135B5B8B) HSP 1 Score: 105 bits (262), Expect = 4.160e-22 Identity = 73/217 (33.64%), Postives = 111/217 (51.15%), Query Frame = 1 Query: 22 MESMVFAAFAVANVGFADSEIGIDLTIVHQTKLPYEEGNAVTSEKLTFLRENEEAL-----AIRNEYGADLVVLIGELNDVCGQASFLPDTLPEHAEFAYSAASPN----CLYTLVLGHEIGHNLGCIHNRED--SYRQFEYAHGRRICPDEVQTSVGFSTIMSYQDSMSPCFTSRVNMYSNPNVTYLGMPTGTETENCARAIEVNKVVVSNFRDKI 639 +E+ + A A AN + +S+I + + +VH ++ Y E + TS L+ + + +RN+YGAD VVLI CG + A +A+S + CL L HE+GHN G H+R S ++Y++G R+C QT GF T+MSY S +RV +SNP VT+ G TGT TE+ AR++ K +V+ FR + Sbjct: 254 IEAKIVNAVAKANQSYINSQIDMQINLVHMAEVSYVESGS-TSTSLSDITGTSDGKMDAVHTLRNQYGADQVVLITTDTSACGTGYLMSSPSTSFASYAFSVVHDDSKYACLSNHTLAHELGHNQGSHHDRASATSTPAYDYSYGYRLC----QTG-GFRTVMSYDCSGG----TRVGYFSNPKVTFNGEYTGTATEDNARSMTNTKAIVAAFRGTV 460
BLAST of mRNA_L-elsbetiae_contig6599.15307.1 vs. uniprot
Match: A0A2D6VIE2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2D6VIE2_9BACT) HSP 1 Score: 104 bits (260), Expect = 6.600e-22 Identity = 77/231 (33.33%), Postives = 121/231 (52.38%), Query Frame = 1 Query: 10 SDTQMESMVFAAFAVANVGFADSEIGIDLTIVHQTKLPYEEGNA--VTSEKLTFLREN--EEALAIRNEYGADLVVLIGELNDVCGQASFL--PDTLPEHAEFAYSAASPNCLYTLVLGHEIGHNLGCIHNRED--------SYRQFEYAHGRRICPDEVQTSVGFSTIMSYQDSMSPCFTSRVNMYSNPNVTYLGMPTGTE-TENCARAIEVNKVVVSNFRDKILDGQEP 657 S +M + + A A AN+ F +S++ I L +VH + Y + V E+LT + +E +R++YGAD+V L+ +D+ G A+ L P E + F L HEIGHN+GC+HNRED SY +A+G+R G+ T+M+Y DS F + + +SNP+V+YLG+ TG TE+ A+A+ ++ +SNFR+ + G P Sbjct: 170 SREEMLAEISNAVAGANLCFRNSQLQIQLRLVHVYESSYSPTSNLDVDLERLTNKNDGHLDEVHTLRDQYGADVVTLLSTDSDMGGLANTLSYPSLSFEESAFNVCVWDQIGAPVFTLAHEIGHNMGCLHNREDASDSSKSSSYDYGAFAYGKRW----YLNGEGYRTVMAYNDS-GKSFDNSIPYFSNPSVSYLGVKTGNSGTEDNAKALGISSPYISNFRESKVQGIVP 395
BLAST of mRNA_L-elsbetiae_contig6599.15307.1 vs. uniprot
Match: A0A354RE73_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A354RE73_9BACT) HSP 1 Score: 103 bits (258), Expect = 1.590e-21 Identity = 72/221 (32.58%), Postives = 117/221 (52.94%), Query Frame = 1 Query: 13 DTQMESMVFAAFAVANVGFADSEIGIDLTIVHQTKLPYEEGNAVTSE----KLTFLRENEEALAIRNEYGADLVVLIGELNDVCGQASFL--PDTLPEHAEFAYSAASPNCLYTLVLGHEIGHNLGCIHNRED--------SYRQFEYAHGRRICPDEVQTSVGFSTIMSYQDSMSPCFTSRVNMYSNPNVTYLGMPTGTE-TENCARAIEVNKVVVSNFR 630 ++ + + + A A AN+ + +S + + L +VHQ + Y + ++ K T +E +R+ YGADLV L+ +D G A+ + P E + F+ S + L HE+GHN+GC+HNRED +Y F ++ G+R DE + G+ TIM+Y D+ F +++ +SNP V+YLG+ TG TEN A+ + + VSNFR Sbjct: 146 ESALSAAILGAVADANLCYLNSGLDLRLRLVHQAQTTYSPSGVLDTDLKRIKETADGHMDEVHGLRDLYGADLVALLTTTSDTGGLANTMSTPSLNFEDSGFSVSVWDQIGAPSYTLAHEVGHNMGCLHNREDDDTTDGDENYDLFAFSFGKRW-QDE---NSGYRTIMAYDDNAEN-FPTKIPYFSNPQVSYLGVTTGNAGTENNAKVLSITAPYVSNFR 361
BLAST of mRNA_L-elsbetiae_contig6599.15307.1 vs. uniprot
Match: A0A1Z9JYK6_9BACT (Cadherin domain-containing protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TMED175 TaxID=1986789 RepID=A0A1Z9JYK6_9BACT) HSP 1 Score: 103 bits (257), Expect = 2.170e-21 Identity = 78/237 (32.91%), Postives = 123/237 (51.90%), Query Frame = 1 Query: 10 SDTQMESMVFAAFAVANVGFADSEIGIDLTIVHQTKLPYEEGNAVTS------EKLTFLREN--EEALAIRNEYGADLVVLIGELNDVCGQASFL--PDTLPEHAEFAYSAASPNCLYTLVLGHEIGHNLGCIHNREDS--------YRQFEYAHGRRICPDEVQTSVGFSTIMSYQDSMSPCFTSRVNMYSNPNVTYLGMPTGTE-TENCARAIEVNKVVVSNFRDKILDGQEPED 663 S +M + + A A AN+ F +S++ I L +VH YE + TS E+LT + +E +R++YGAD+V L+ +D+ G A+ L P E + F L HEIGHN+GC+HNRED+ Y +A+G+R G+ T+M+Y DS F + + +SNP+V+YLG+ TG TE+ A+A+ ++ ++NFR+ + G P D Sbjct: 170 SKEEMLAEINNAVAGANLCFRNSQLQIQLRLVHV----YESSYSPTSNLDIDLERLTNKNDGHLDEVHTLRDQYGADVVTLLSTDSDMGGLANTLSYPSLSFEESAFNVCVWDQIGAPVFTLAHEIGHNMGCLHNREDASDSSQSSNYDYGAFAYGKRW----YLNGEGYRTVMAYNDS-GKNFDNSIPYFSNPSVSYLGVKTGNSGTEDNAKALRISSPYIANFRESKVQGIVPSD 397 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6599.15307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6599.15307.1 >prot_L-elsbetiae_contig6599.15307.1 ID=prot_L-elsbetiae_contig6599.15307.1|Name=mRNA_L-elsbetiae_contig6599.15307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp MGVSDTQMESMVFAAFAVANVGFADSEIGIDLTIVHQTKLPYEEGNAVTSback to top mRNA from alignment at L-elsbetiae_contig6599:456..3434- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6599.15307.1 ID=mRNA_L-elsbetiae_contig6599.15307.1|Name=mRNA_L-elsbetiae_contig6599.15307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2979bp|location=Sequence derived from alignment at L-elsbetiae_contig6599:456..3434- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6599:456..3434- >mRNA_L-elsbetiae_contig6599.15307.1 ID=mRNA_L-elsbetiae_contig6599.15307.1|Name=mRNA_L-elsbetiae_contig6599.15307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig6599:456..3434- (Laminarionema elsbetiae ELsaHSoW15)back to top |