mRNA_L-elsbetiae_contig6597.15305.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6597.15305.1
Unique NamemRNA_L-elsbetiae_contig6597.15305.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6597.15305.1 vs. uniprot
Match: A0A6H5JUF1_9PHAE (Thioesterase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF1_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 1.010e-66
Identity = 99/131 (75.57%), Postives = 109/131 (83.21%), Query Frame = 1
Query:    1 MCVGTGLLPPVSQLPRDALVDHLVDLGGMPAELRDQTELVDYFLPSIRADYTAFESYRYEPRPADDDCPPISCPLVCLGGEEDRGAPRGDLARWASFTTSEFRLKTFGGGHFFLQGEGEPAVLEYLIDVLT 393
            MCVG G  PP+SQLPRDALVDHL+ LGGMP ELRDQTELVDYFLP IRADYTA+E YRYEPRP DD  P I+CP++CLGGEED GAPR DL  W+S T  EFRL+ FGGGHFFLQGEGE AVL +L +VLT
Sbjct:  130 MCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAYEGYRYEPRPGDDSRP-ITCPIICLGGEEDGGAPRSDLELWSSLTAGEFRLQMFGGGHFFLQGEGEQAVLTFLGNVLT 259          
BLAST of mRNA_L-elsbetiae_contig6597.15305.1 vs. uniprot
Match: A0A8A4TGQ5_9BACT (Thioesterase n=1 Tax=Sulfidibacter corallicola TaxID=2818388 RepID=A0A8A4TGQ5_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 3.670e-22
Identity = 44/126 (34.92%), Postives = 72/126 (57.14%), Query Frame = 1
Query:   16 GLLPPVSQLPRDALVDHLVDLGGMPAELRDQTELVDYFLPSIRADYTAFESYRYEPRPADDDCPPISCPLVCLGGEEDRGAPRGDLARWASFTTSEFRLKTFGGGHFFLQGEGEPAVLEYLIDVLT 393
            G++PP+  LP +A ++ +   GG+  E+ +  EL++  LP +RAD+    SYRY+P       PP+ CP+  +GG +D   P   +  W   T++ F +KTF GGHF+L+ E    +L++L    T
Sbjct:  129 GIVPPLHHLPDEAFIEQVGAFGGLQPEVLEHKELLEMILPGLRADFKLSASYRYQP------APPLPCPITAMGGLQDATVPLEKIQGWRDQTSNAFDVKTFDGGHFYLE-ENRGEMLDFLAKTCT 247          
BLAST of mRNA_L-elsbetiae_contig6597.15305.1 vs. uniprot
Match: UPI0005F2EC08 (alpha/beta fold hydrolase n=1 Tax=Actinoplanes rectilineatus TaxID=113571 RepID=UPI0005F2EC08)

HSP 1 Score: 94.7 bits (234), Expect = 3.730e-21
Identity = 49/123 (39.84%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   31 VSQLPRDALVDHLVDLGGMPAELRDQTELVDYFLPSIRADYTAFESYRYEPRPADDDCPPISCPLVCLGGEEDRGAPRGDLARWASFTTSEFRLKTFGGGHFFLQGEGEPAVLEYLIDVLTPL 399
            V Q   D LV  L  L G  + +    EL+   LP+IR DYTA E+YR++P       PP+ CP+V L G++D      + A W+  T+  F L+TF GGHFFL G+   AV++ + D L P+
Sbjct:  134 VHQRDDDGLVAELKSLSGTDSRILGDDELLRMILPAIRGDYTAAETYRWQP------VPPLDCPIVALTGDDDPKVSLEEAAAWSEHTSGSFELRTFPGGHFFL-GQHRRAVVDLISDQLLPV 249          
BLAST of mRNA_L-elsbetiae_contig6597.15305.1 vs. uniprot
Match: UPI0013E8FEC1 (alpha/beta fold hydrolase n=1 Tax=Streptomyces sp. GZWMJZ-114 TaxID=2494734 RepID=UPI0013E8FEC1)

HSP 1 Score: 94.7 bits (234), Expect = 5.960e-21
Identity = 50/126 (39.68%), Postives = 68/126 (53.97%), Query Frame = 1
Query:   22 LPPVSQLPRDALVDHLVDLGGMPAELRDQTELVDYFLPSIRADYTAFESYRYEPRPADDDCPPISCPLVCLGGEEDRGAPRGDLARWASFTTSEFRLKTFGGGHFFLQGEGEPAVLEYLIDVLTPL 399
            LP    LPR+ L+  LV  G  P  L D  E++D+FLP IRAD+   E+    P P      P+  P++ LGGE+D      +L  W+  T + FR++ F GGHFF Q   E  ++E L D LT L
Sbjct:  139 LPLTHSLPREELIGKLVQFGVTPQALLDNQEMLDFFLPVIRADFALSETAEEHPSP------PLDVPILALGGEDDAPVGMNELNAWSQHTIAAFRVRRFAGGHFF-QFSSEGQLMELLRDELTDL 257          
BLAST of mRNA_L-elsbetiae_contig6597.15305.1 vs. uniprot
Match: A0A1T4VRY4_9DELT (Medium-chain acyl-[acyl-carrier-protein] hydrolase n=2 Tax=Paradesulfovibrio TaxID=2910986 RepID=A0A1T4VRY4_9DELT)

HSP 1 Score: 94.0 bits (232), Expect = 9.510e-21
Identity = 47/121 (38.84%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   40 LPRDALVDHLVDLGGMPAELRDQTELVDYFLPSIRADYTAFESYRYEPRPADDDCPPISCPLVCLGGEEDRGAPRGDLARWASFTTSEFRLKTFGGGHFFLQGEGEPAVLEYLIDVLTPLY 402
            LP     + L DLGG P E+ + TEL+D +LP++RAD+   ESY + P      CPP  CP+    G+ D+ AP+ +   W   TT+ FRL+ F GGHFF+       + E L D+ + L+
Sbjct:  137 LPDKEFKEALRDLGGTPDEVLENTELMDMYLPALRADFALKESYVHSP------CPPFDCPITAYCGDHDKEAPQDESQTWDQETTAAFRLRCFPGGHFFIHDN----LSELLSDMKSQLH 247          
BLAST of mRNA_L-elsbetiae_contig6597.15305.1 vs. uniprot
Match: UPI00159045F7 (alpha/beta fold hydrolase n=1 Tax=Burkholderia sp. BCC1644 TaxID=2676293 RepID=UPI00159045F7)

HSP 1 Score: 92.8 bits (229), Expect = 3.110e-20
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 1
Query:   40 LPRDALVDHLVDLGGMPAELRDQTELVDYFLPSIRADYTAFESYRYEPRPADDDCPPISCPLVCLGGEEDRGAPRGDLARWASFTTSEFRLKTFGGGHFFLQGEGEPAVLEYLIDVL 390
            LPRDAL+D L+ L G+PA  R++ + +D F+P+IRAD    E++R  PR        +  P+  L G +DR     D   W  FT++EF ++ F GGHFF+    + AVL+YL  ++
Sbjct:  139 LPRDALIDALIRLDGLPAIARERRDFIDTFMPTIRADLQCRETWRSTPRD-------LGIPIHVLTGTDDRLVSEADALEWHVFTSAEFSIRRFDGGHFFIHS-AKQAVLDYLAAIV 247          
BLAST of mRNA_L-elsbetiae_contig6597.15305.1 vs. uniprot
Match: A0A4D9CZX3_9STRA (Thioesterase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZX3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.560e-20
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   25 PPVSQLPRDALVDHLVDLGGMPAELRDQTELVDYFLPSIRADYTAFESYRYEPRPADDDCPPISCPLVCLGGEEDRGAPRGDLARWASFTTSEFRLKTFGGGHFFLQGEGEPAVLEYLIDVL 390
            P  S    D LV  L+D+GG+  E+    ++V  FLP+++ DY A + Y Y       + PP+ CP++ LG ++D   P+ +   WA FTT EF  + F GGHFFL+   E  V+ Y+  V+
Sbjct:  222 PKFSVANDDELVSSLLDMGGITKEMARNRDVVTQFLPALKGDYLAVDKYVYH------EAPPLDCPILALGSDQDLRVPQHETEEWARFTTKEFESRIFPGGHFFLKPL-EKEVVAYVSSVI 336          
BLAST of mRNA_L-elsbetiae_contig6597.15305.1 vs. uniprot
Match: UPI001574BDD2 (alpha/beta fold hydrolase n=1 Tax=Rhizobium skierniewicense TaxID=984260 RepID=UPI001574BDD2)

HSP 1 Score: 90.9 bits (224), Expect = 1.300e-19
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   31 VSQLPRDALVDHLVDLGGMPAELRDQTELVDYFLPSIRADYTAFESYRYEPRPADDDCPPISCPLVCLGGEEDRGAPRGDLARWASFTTSEFRLKTFGGGHFFLQGEGE 357
            +  LP DA +D ++ L G P E+    +L+D  LP++RAD+ A E+Y   P P      P++CP+V LGG ED   P   +  W   +T  FR ++F G HFF++ + E
Sbjct:  140 IHALPDDAFIDAVMRLNGSPPEVLKHPDLIDLILPTLRADFEAVETYHLTPEP------PLTCPIVALGGREDPDLPATSIEAWRVHSTGTFRHESFPGDHFFIRAQDE 242          
BLAST of mRNA_L-elsbetiae_contig6597.15305.1 vs. uniprot
Match: A0A841CDD4_9PSEU (Surfactin synthase thioesterase subunit n=1 Tax=Saccharothrix tamanrassetensis TaxID=1051531 RepID=A0A841CDD4_9PSEU)

HSP 1 Score: 90.5 bits (223), Expect = 1.370e-19
Identity = 42/107 (39.25%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   28 PVSQLPRDALVDHLVDLGGMPAELRDQTELVDYFLPSIRADYTAFESYRYEPRPADDDCPPISCPLVCLGGEEDRGAPRGDLARWASFTTSEFRLKTFGGGHFFLQG 348
            P+  LP    +  +  +GG PAE+ DQ +L+  FLP +RAD+T  E+Y + P PA      + CP+  L G+ D      ++ RW   TT  FRL+ F GGHF+L G
Sbjct:  127 PLHPLPHKEFMPAVAAMGGTPAEVLDQPDLIRMFLPGLRADFTVNETYEHRPGPA------LDCPVTGLTGDTDPEVDLAEMRRWNDITTGPFRLRVFRGGHFYLTG 227          
BLAST of mRNA_L-elsbetiae_contig6597.15305.1 vs. uniprot
Match: A0A100JCI7_9ACTN (Linear gramicidin dehydrogenase LgrE n=9 Tax=Streptomyces TaxID=1883 RepID=A0A100JCI7_9ACTN)

HSP 1 Score: 90.1 bits (222), Expect = 2.100e-19
Identity = 44/116 (37.93%), Postives = 63/116 (54.31%), Query Frame = 1
Query:   25 PPVSQLPRDALVDHLVDLGGMPAELRDQTELVDYFLPSIRADYTAFESYRYEPRPADDDCPPISCPLVCLGGEEDRGAPRGDLARWASFTTSEFRLKTFGGGHFFLQGEGEPAVLE 372
            P +  LP   LV HL ++GG P  +  + +L+D FLP++RAD+   E+YRY P  A      ++ PL   G   D  A   +L  W+  T +EFRL+ F GGHFF+    +  V E
Sbjct:  133 PTLYALPTPELVPHLREIGGTPESVLGEPDLLDVFLPTLRADFEVNETYRYVPEAA------LTTPLTVFGATHDPRADEHELRAWSGLTEAEFRLRIFDGGHFFVTPHAQALVTE 242          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6597.15305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUF1_9PHAE1.010e-6675.57Thioesterase domain-containing protein n=2 Tax=Ect... [more]
A0A8A4TGQ5_9BACT3.670e-2234.92Thioesterase n=1 Tax=Sulfidibacter corallicola Tax... [more]
UPI0005F2EC083.730e-2139.84alpha/beta fold hydrolase n=1 Tax=Actinoplanes rec... [more]
UPI0013E8FEC15.960e-2139.68alpha/beta fold hydrolase n=1 Tax=Streptomyces sp.... [more]
A0A1T4VRY4_9DELT9.510e-2138.84Medium-chain acyl-[acyl-carrier-protein] hydrolase... [more]
UPI00159045F73.110e-2039.32alpha/beta fold hydrolase n=1 Tax=Burkholderia sp.... [more]
A0A4D9CZX3_9STRA9.560e-2036.89Thioesterase domain-containing protein n=2 Tax=Mon... [more]
UPI001574BDD21.300e-1937.61alpha/beta fold hydrolase n=1 Tax=Rhizobium skiern... [more]
A0A841CDD4_9PSEU1.370e-1939.25Surfactin synthase thioesterase subunit n=1 Tax=Sa... [more]
A0A100JCI7_9ACTN2.100e-1937.93Linear gramicidin dehydrogenase LgrE n=9 Tax=Strep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6597contigL-elsbetiae_contig6597:9715..10809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.4
Seed ortholog evalue6.6e-53
Seed eggNOG ortholog2880.D8LKB7
Preferred nameOLAH
KEGG rclassRC00014,RC00039
KEGG koko:K01071
KEGG ReactionR04014,R08157,R08158
KEGG Pathwayko00061,ko01100,map00061,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004312,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016295,GO:0016296,GO:0016297,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0016790,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0047381,GO:0051791,GO:0051792,GO:0071704,GO:0072330,GO:1901576
EggNOG free text desc.dodecanoyl-[acyl-carrier-protein] hydrolase activity
EggNOG OGs2RGSQ@2759,COG3208@1
Ec32 orthologEc-01_009660.2
EC3.1.2.21
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Ec32 ortholog descriptionfatty acid-ACP thioesterase
Ec32 orthologEc-01_009660.1
Exons2
Model size405
Cds size405
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.0003924-CDS-L-elsbetiae_contig6597:9714..99641622816729.0003924-CDS-L-elsbetiae_contig6597:9714..9964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6597 9715..9964 -
1691683770.1808002-CDS-L-elsbetiae_contig6597:9714..99641691683770.1808002-CDS-L-elsbetiae_contig6597:9714..9964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6597 9715..9964 -
1622816729.012184-CDS-L-elsbetiae_contig6597:10654..108091622816729.012184-CDS-L-elsbetiae_contig6597:10654..10809Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6597 10655..10809 -
1691683770.191405-CDS-L-elsbetiae_contig6597:10654..108091691683770.191405-CDS-L-elsbetiae_contig6597:10654..10809Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6597 10655..10809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6597.15305.1prot_L-elsbetiae_contig6597.15305.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6597 9715..10809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6597.15305.1

>prot_L-elsbetiae_contig6597.15305.1 ID=prot_L-elsbetiae_contig6597.15305.1|Name=mRNA_L-elsbetiae_contig6597.15305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MCVGTGLLPPVSQLPRDALVDHLVDLGGMPAELRDQTELVDYFLPSIRAD
YTAFESYRYEPRPADDDCPPISCPLVCLGGEEDRGAPRGDLARWASFTTS
EFRLKTFGGGHFFLQGEGEPAVLEYLIDVLTPLY*
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mRNA from alignment at L-elsbetiae_contig6597:9715..10809-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6597.15305.1 ID=mRNA_L-elsbetiae_contig6597.15305.1|Name=mRNA_L-elsbetiae_contig6597.15305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1095bp|location=Sequence derived from alignment at L-elsbetiae_contig6597:9715..10809- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGTCGGGACTGGGCTGTTGCCCCCGGTAAGCCAGCTGCCGCGGGA CGCCCTTGTAGACCACCTCGTCGACCTGGGGGGTATGCCCGCCGAGCTCA GGGATCAGACGGAACTTGTCGACTACTTCCTTCCATCGATTCGGGCGGAC TACACGTGAGAGGAGAACTGGAATCGTCGACCACGAACCCCTAGCGGTTT CAACTTTTTTGGCAGAGGGAACTTTTTTTTTTTTGTGAGAGCATGGGCGG TAGAAATTCTCACACTTGGAAAGGAGATACCACACACTCGAGTCTTGTCT AAGGTGAGTACATTTTTAAGCTTTTCATAGTTAAGGCACAGAAGATTCCT GCTTTTGTTTCAGGGGATTTTTGTCCGGAGCGCTGAAGGGACAACAAAAT GACATGCTCACCGACACTCTTGTTGTGCAGCCGCACTGCGTAACGTGGCC CCAACAAGCGCTGCAGCTGTAGAAGTATATAAACTGGTGTCATTTTGTTG TCGCACGTGATTCGTTCTACCGACACACACCGCCAAAGCGTTATTTTCTC TGTTTGCAGAGACGGAGTAGTGTCCGTCCGTTGACCAAGTTGTCTAGAGT ACGGTGTGTGACAAGCTGATGCCGGATGGGGACGCACTGCACGCCTTGAG TGTAATAAAAACATTATTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCGCGGCCCCCCCGCCCCCGGCGCGCTTGGGGGCGGTCTGGGGCGG GGCNNNNNNNNNNCGCCTTGAGTGTAATAAAAACATTATTCTTCCCCCCC CCCCCCCGCCCCCGGGTCCAATTTGGGTCGCCATTGACCCTTCAGTGCTT TTGAGAGCTACAGGTACGAACCTCGGCCCGCGGACGATGACTGCCCGCCA ATATCTTGCCCCCTGGTCTGCCTTGGCGGGGAGGAGGATAGAGGGGCCCC GCGGGGCGATTTGGCTCGCTGGGCGAGCTTCACGACGAGCGAATTTCGCT TGAAAACGTTTGGTGGTGGGCACTTCTTCTTGCAGGGCGAGGGAGAGCCG GCGGTGCTAGAATATTTGATTGATGTGCTGACCCCCCTGTACTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6597:9715..10809-

>mRNA_L-elsbetiae_contig6597.15305.1 ID=mRNA_L-elsbetiae_contig6597.15305.1|Name=mRNA_L-elsbetiae_contig6597.15305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig6597:9715..10809- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGTCGGGACTGGGCTGTTGCCCCCGGTAAGCCAGCTGCCGCGGGA
CGCCCTTGTAGACCACCTCGTCGACCTGGGGGGTATGCCCGCCGAGCTCA
GGGATCAGACGGAACTTGTCGACTACTTCCTTCCATCGATTCGGGCGGAC
TACACATGTGCGTCGGGACTGGGCTGTTGCCCCCGGTAAGCCAGCTGCCG
CGGGACGCCCTTGTAGACCACCTCGTCGACCTGGGGGGTATGCCCGCCGA
GCTCAGGGATCAGACGGAACTTGTCGACTACTTCCTTCCATCGATTCGGG
CGGACTACACTGCTTTTGAGAGCTACAGGTACGAACCTCGGCCCGCGGAC
GATGACTGCCCGCCAATATCTTGCCCCCTGGTCTGCCTTGGCGGGGAGGA
GGATAGAGGGGCCCCGCGGGGCGATTTGGCTCGCTGGGCGAGCTTCACGA
CGAGCGAATTTCGCTTGAAAACGTTTGGTGGTGGGCACTTCTTCTTGCAG
GGCGAGGGAGAGCCGGCGGTGCTAGAATATTTGATTGATGTGCTGACCCC
CCTGTACTGATGCTTTTGAGAGCTACAGGTACGAACCTCGGCCCGCGGAC
GATGACTGCCCGCCAATATCTTGCCCCCTGGTCTGCCTTGGCGGGGAGGA
GGATAGAGGGGCCCCGCGGGGCGATTTGGCTCGCTGGGCGAGCTTCACGA
CGAGCGAATTTCGCTTGAAAACGTTTGGTGGTGGGCACTTCTTCTTGCAG
GGCGAGGGAGAGCCGGCGGTGCTAGAATATTTGATTGATGTGCTGACCCC
CCTGTACTGA
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