mRNA_L-elsbetiae_contig6593.15299.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig6593.15299.1
Unique Name	mRNA_L-elsbetiae_contig6593.15299.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig6593.15299.1 vs. uniprot
Match: A0A6H5L2M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M7_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 6.880e-52
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = -1

Query:    1 MEAKWSKALESVRKDVECFFGILKGRFRILKLGILFQDKVDIDNMFFTCCTLHNMLHAFDGLDELEPTVNWGGKEGLHDPWDHAPLTDESTVGSTGP--ANDD 303
            ME+KWSKA ESVR+DVECFFGILKGRFRILKLGILFQDK  IDN+FFTCCT HN+LHAFDGLDELE   +WGG+ GLHD WD+ PL DESTVGST P  A+DD
Sbjct:    1 MESKWSKAPESVREDVECFFGILKGRFRILKLGILFQDKNVIDNLFFTCCTSHNVLHAFDGLDELETVEDWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDD 103

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BLAST of mRNA_L-elsbetiae_contig6593.15299.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.480e-47
Identity = 72/111 (64.86%), Postives = 85/111 (76.58%), Query Frame = -1

Query:   16 QWGILIPPSKYPGSEMEAKWSKALESVRKDVECFFGILKGRFRILKLGILFQDKVDIDNMFFTCCTLHNMLHAFDGLDELEPTVNWGGKEGLHDPWDHAPLTDESTVGSTG 348
            QW  LI PSKYP +  +  +S+ LESVRKDVECFF ILKGRFRILKL + ++ K DIDN+F TCC LHNMLH FDG+D  E  V+W G  GLHDPWDH PLTD +++GSTG
Sbjct:   11 QWVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTG 121

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BLAST of mRNA_L-elsbetiae_contig6593.15299.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 8.430e-47
Identity = 72/110 (65.45%), Postives = 85/110 (77.27%), Query Frame = -1

Query:   16 WGILIPPSKYPGSEMEAKWSKALESVRKDVECFFGILKGRFRILKLGILFQDKVDIDNMFFTCCTLHNMLHAFDGLDELEPTVNWGGKEGLHDPWDHAPLTDESTVGSTG 345
            W  LI PSKYP +  +  +S+ LESVRKDVECFFGILKGRFRILKL + ++ K DIDN+F TCC LHNMLH FDG+D  E  V+W G  GLHDPWDH PLTD +++GSTG
Sbjct:    2 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTG 111

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BLAST of mRNA_L-elsbetiae_contig6593.15299.1 vs. uniprot
Match: A0A6H5KML5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML5_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.120e-46
Identity = 79/107 (73.83%), Postives = 89/107 (83.18%), Query Frame = -1

Query:    1 SEMEAKWSKALESVRKDVECFFGILKGRFRILKLGILFQDKVDIDNMFFTCCTLHNMLHAFDGLDELEPTVNWGGKEGL--HDPWDHAPLTDESTVGSTGP--ANDD 309
            ++ME+KWSKALESVRKDVE FFGILKGRFRILKLGILFQ +  IDN+FFTCCTLH+MLHAFDGLDELE    WGG+ GL  H  WD+ PL D+STVGST P  A+DD
Sbjct:    4 TDMESKWSKALESVRKDVEYFFGILKGRFRILKLGILFQHENVIDNLFFTCCTLHSMLHAFDGLDELETVKEWGGRAGLGLHGTWDNDPLLDDSTVGSTSPTPADDD 110

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BLAST of mRNA_L-elsbetiae_contig6593.15299.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 9.430e-46
Identity = 75/125 (60.00%), Postives = 92/125 (73.60%), Query Frame = -1

Query:   16 DKPAVAPFASCLSSQWGILIPPSKYPGSEMEAKWSKALESVRKDVECFFGILKGRFRILKLGILFQDKVDIDNMFFTCCTLHNMLHAFDGLDELEPTVNWGGKEGLHDPWDHAPLTDESTVGSTG 390
            +K AV      +  +W  LI PSKYP +  +  +S+ LESVRKDVECFFGILKGRFRILKL + ++ K DIDN+F+TCC LHNMLH FDG+D  E  V+W G  GLHDPWDH PLTD +++GSTG
Sbjct:  318 EKDAVGRQGIPIELKWVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKKDIDNIFYTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTG 442

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BLAST of mRNA_L-elsbetiae_contig6593.15299.1 vs. uniprot
Match: A0A6H5K9X5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X5_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 6.980e-43
Identity = 74/104 (71.15%), Postives = 82/104 (78.85%), Query Frame = -1

Query:   46 IPPSKYPG--------SEMEAKWSKALESVRKDVECFFGILKGRFRILKLGILFQDKVDIDNMFFTCCTLHNMLHAFDGLDELEPTVNWGGKEGLHDPWDHAPL 333
            +PP +Y G        ++ME+KW KAL SVRK VECFFGILKGRFRILKLGILFQDK  IDN+FFTCCTLHNMLHAFDGLDELE    WGG+ GLHD WD+ PL
Sbjct:  357 VPPLEYAGELWEGKKKTDMESKWCKALASVRKYVECFFGILKGRFRILKLGILFQDKNVIDNLFFTCCTLHNMLHAFDGLDELESAEEWGGRAGLHDAWDNDPL 460

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BLAST of mRNA_L-elsbetiae_contig6593.15299.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 6.940e-42
Identity = 68/111 (61.26%), Postives = 81/111 (72.97%), Query Frame = -1

Query:   16 QWGILIPPSKYPGSEMEAKWSKALESVRKDVECFFGILKGRFRILKLGILFQDKVDIDNMFFTCCTLHNMLHAFDGLDELEPTVNWGGKEGLHDPWDHAPLTDESTVGSTG 348
            +W  LI PSKYP S  +  +S+ LESVRKDVECFFGILKGRFRILKL + +  +  IDN+FFTCC LHNMLH FDGLD  +   +W G  G HD W+H PLTD ++VGS G
Sbjct:   93 EWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWEHDPLTDYTSVGSKG 203

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BLAST of mRNA_L-elsbetiae_contig6593.15299.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 5.120e-41
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = -1

Query:   16 QWGILIPPSKYPGSEMEAKWSKALESVRKDVECFFGILKGRFRILKLGILFQDKVDIDNMFFTCCTLHNMLHAFDGLDELEPTVNWGGKEGLHDPWDHAPLTDESTVGSTG 348
            +W  LIPPSKYP  + +  +SK LESVRKDVECFFGI+KG FRILKL I +  + DIDN+FFTCC LHNMLH++D   E+E   NW G  GLH+ W+H P  D S+VG+ G
Sbjct:   93 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKG 203

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BLAST of mRNA_L-elsbetiae_contig6593.15299.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 7.560e-40
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = -1

Query:   16 QWGILIPPSKYPGSEMEAKWSKALESVRKDVECFFGILKGRFRILKLGILFQDKVDIDNMFFTCCTLHNMLHAFDGLDELEPTVNWGGKEGLHDPWDHAPLTDESTVGSTG 348
            +W  LIPPSKYP  + +  +SK LESVRKDVECFFGI+KGRFRILKL I +  + DIDN+FFTCC LHNMLH++D   E+E   NW G  GLH+ W+H P  D S+VG+ G
Sbjct:  334 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKG 444

[Close]

BLAST of mRNA_L-elsbetiae_contig6593.15299.1 vs. uniprot
Match: A0A6H5KZ66_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ66_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 5.270e-38
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = -1

Query:   55 YPGSEMEAKWSKALESVRKDVECFFGILKGRFRILKLGILFQDKVDIDNMFFTCCTLHNMLHAFDGLDELEPTVNWGGKEGLHDPWDH 318
            Y  ++ME+KWSKA ESVRKDVECF GIL GRF+ILKLGI FQDK  IDN+F TCCTLHNMLHAFDGL+ELE    WG + GLHD WD+
Sbjct:  110 YNKTDMESKWSKAQESVRKDVECF-GILMGRFKILKLGIFFQDKNVIDNLFVTCCTLHNMLHAFDGLEELEIVEEWGARAGLHDAWDN 196

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig6593.15299.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig6593.15299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L2M7_9PHAE	6.880e-52	78.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L135_9PHAE	3.480e-47	64.86	Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMK5_9PHAE	8.430e-47	65.45	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KML5_9PHAE	1.120e-46	73.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K5C1_9PHAE	9.430e-46	60.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K9X5_9PHAE	6.980e-43	71.15	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5JQM6_9PHAE	6.940e-42	61.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTC6_9PHAE	5.120e-41	59.46	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5JAU4_9PHAE	7.560e-40	60.36	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZ66_9PHAE	5.270e-38	72.73	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig6593	contig	L-elsbetiae_contig6593:6309..6707 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	399
Cds size	330
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816728.4807816-UTR-L-elsbetiae_contig6593:6308..6377	1622816728.4807816-UTR-L-elsbetiae_contig6593:6308..6377	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig6593 6309..6377 +
1691683769.8277464-UTR-L-elsbetiae_contig6593:6308..6377	1691683769.8277464-UTR-L-elsbetiae_contig6593:6308..6377	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig6593 6309..6377 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816728.4926758-CDS-L-elsbetiae_contig6593:6377..6707	1622816728.4926758-CDS-L-elsbetiae_contig6593:6377..6707	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig6593 6378..6707 +
1691683769.8404799-CDS-L-elsbetiae_contig6593:6377..6707	1691683769.8404799-CDS-L-elsbetiae_contig6593:6377..6707	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig6593 6378..6707 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig6593.15299.1	prot_L-elsbetiae_contig6593.15299.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig6593 6378..6707 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig6593:6309..6707+
coding sequence from alignment at L-elsbetiae_contig6593:6309..6707+

protein sequence of mRNA_L-elsbetiae_contig6593.15299.1

>prot_L-elsbetiae_contig6593.15299.1 ID=prot_L-elsbetiae_contig6593.15299.1|Name=mRNA_L-elsbetiae_contig6593.15299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MKALLPPPVYRRFELVQAVECVKHVVQGAAREEHVVDVDLVLKEDPKLED
SKAPLQDAEKALDIFADAFQRLTPLGFHLRTWVLGRRDEDSPLGRKARRK
GSNGGFVRT*

mRNA from alignment at L-elsbetiae_contig6593:6309..6707+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig6593.15299.1 ID=mRNA_L-elsbetiae_contig6593.15299.1|Name=mRNA_L-elsbetiae_contig6593.15299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=399bp|location=Sequence derived from alignment at L-elsbetiae_contig6593:6309..6707+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGTCGTTCGCCGGGCCCGTTGACCCCACCGTGCTCTCGTCCGTCAAGG
GTGCGTGGTCCCACGGGTCATGAAGGCCCTCCTTCCCCCCCCAGTTTACC
GTAGGTTCGAGCTCGTCCAGGCCGTCGAATGCGTGAAGCATGTTGTGCAA
GGTGCAGCACGTGAAGAACATGTTGTCGATGTCGACCTTGTCTTGAAAGA
GGATCCCAAGCTTGAGGATTCGAAAGCGCCCCTTCAAGATGCCGAAAAAG
CACTCGACATCTTTGCGGACGCTTTCCAGCGCCTTACTCCACTTGGCTTC
CATCTCCGAACCTGGGTACTTGGACGGCGGGATGAGGATTCCCCACTGGG
ACGAAAGGCAAGACGCAAAGGGAGCAACGGCGGGTTTGTCAGAACATAA

Coding sequence (CDS) from alignment at L-elsbetiae_contig6593:6309..6707+

>mRNA_L-elsbetiae_contig6593.15299.1 ID=mRNA_L-elsbetiae_contig6593.15299.1|Name=mRNA_L-elsbetiae_contig6593.15299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig6593:6309..6707+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGCCCTCCTTCCCCCCCCAGTTTACCGTAGGTTCGAGCTCGTCCA
GGCCGTCGAATGCGTGAAGCATGTTGTGCAAGGTGCAGCACGTGAAGAAC
ATGTTGTCGATGTCGACCTTGTCTTGAAAGAGGATCCCAAGCTTGAGGAT
TCGAAAGCGCCCCTTCAAGATGCCGAAAAAGCACTCGACATCTTTGCGGA
CGCTTTCCAGCGCCTTACTCCACTTGGCTTCCATCTCCGAACCTGGGTAC
TTGGACGGCGGGATGAGGATTCCCCACTGGGACGAAAGGCAAGACGCAAA
GGGAGCAACGGCGGGTTTGTCAGAACATAAATGAAGGCCCTCCTTCCCCC
CCCAGTTTACCGTAGGTTCGAGCTCGTCCAGGCCGTCGAATGCGTGAAGC
ATGTTGTGCAAGGTGCAGCACGTGAAGAACATGTTGTCGATGTCGACCTT
GTCTTGAAAGAGGATCCCAAGCTTGAGGATTCGAAAGCGCCCCTTCAAGA
TGCCGAAAAAGCACTCGACATCTTTGCGGACGCTTTCCAGCGCCTTACTC
CACTTGGCTTCCATCTCCGAACCTGGGTACTTGGACGGCGGGATGAGGAT
TCCCCACTGGGACGAAAGGCAAGACGCAAAGGGAGCAACGGCGGGTTTGT
CAGAACATAA