mRNA_L-elsbetiae_contig6589.15294.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6589.15294.1
Unique NamemRNA_L-elsbetiae_contig6589.15294.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6589.15294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6589contigL-elsbetiae_contig6589:7909..8825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size917
Cds size729
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.949524-UTR-L-elsbetiae_contig6589:7908..80961622816727.949524-UTR-L-elsbetiae_contig6589:7908..8096Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6589 7909..8096 +
1691683769.4465077-UTR-L-elsbetiae_contig6589:7908..80961691683769.4465077-UTR-L-elsbetiae_contig6589:7908..8096Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6589 7909..8096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.9637635-CDS-L-elsbetiae_contig6589:8096..88251622816727.9637635-CDS-L-elsbetiae_contig6589:8096..8825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 8097..8825 +
1691683769.4570732-CDS-L-elsbetiae_contig6589:8096..88251691683769.4570732-CDS-L-elsbetiae_contig6589:8096..8825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 8097..8825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6589.15294.1prot_L-elsbetiae_contig6589.15294.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6589 8097..8825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6589.15294.1

>prot_L-elsbetiae_contig6589.15294.1 ID=prot_L-elsbetiae_contig6589.15294.1|Name=mRNA_L-elsbetiae_contig6589.15294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
MMPAQLDFHLELEPRPLCASHFITIAIIEWGDVALLEVAVKFKCGHFGCG
PEMCAKAAGAGHLECLQLLRANNYRWNATTLESAAFGGHIHTLNWAQTKK
CPRKNDAISIFAVMGGHQTAIDWARSNNCRFDVFTFREAAAGGNLDIMED
LHANGCYFNFMSCTAAAEHGHLQALMWLREKGCEWNEFICSGAADKGHLD
VLKFARRNGCPWDSTVISYARAEKHHDIVSWALENGCEEPQA*
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mRNA from alignment at L-elsbetiae_contig6589:7909..8825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6589.15294.1 ID=mRNA_L-elsbetiae_contig6589.15294.1|Name=mRNA_L-elsbetiae_contig6589.15294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=917bp|location=Sequence derived from alignment at L-elsbetiae_contig6589:7909..8825+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTGTGGACACCCCGAGCACGCCCGGCAGTCGGTTCGCTGAGTTAGAAG
GTGATGGTCTCGGTCCCCCGCTCCTTGTGGAAAAATTCCTAGGAAACGAC
CAGTACCTCTCTGTCGCTTTAGTGTGTCGGGCCTGGCTGGCGCTGTGGGG
GTGACGCCCCGAAGCTTGCGAGGGGGTTGACTCGAGGCATGATGCCCGCT
CAACTGGACTTCCACTTGGAGCTCGAACCAAGGCCACTCTGTGCAAGTCA
TTTCATCACCATCGCGATCATCGAGTGGGGCGATGTTGCGCTTTTGGAGG
TGGCCGTCAAGTTCAAATGCGGACATTTCGGATGCGGGCCAGAAATGTGC
GCAAAGGCGGCCGGGGCAGGGCACCTGGAGTGCCTTCAACTCCTACGGGC
TAACAACTACCGATGGAACGCGACCACCCTCGAGAGTGCAGCCTTCGGAG
GGCATATCCACACGTTGAACTGGGCGCAGACGAAGAAATGCCCACGCAAA
AACGACGCGATTTCTATCTTTGCCGTCATGGGCGGGCACCAGACCGCCAT
CGACTGGGCGAGAAGCAACAACTGTCGATTCGATGTGTTCACATTCCGCG
AGGCCGCTGCGGGGGGGAATCTCGACATCATGGAGGACCTGCACGCGAAC
GGTTGCTATTTCAACTTTATGTCTTGTACCGCGGCGGCCGAGCACGGACA
TCTCCAAGCATTGATGTGGCTCAGGGAAAAGGGTTGCGAGTGGAATGAAT
TTATTTGCTCGGGCGCTGCTGACAAAGGCCATCTAGACGTGCTCAAGTTT
GCAAGGAGGAATGGATGCCCGTGGGATTCCACCGTGATTAGCTACGCTCG
TGCCGAAAAACACCACGATATTGTGTCTTGGGCACTGGAAAATGGGTGCG
AAGAGCCACAGGCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6589:7909..8825+

>mRNA_L-elsbetiae_contig6589.15294.1 ID=mRNA_L-elsbetiae_contig6589.15294.1|Name=mRNA_L-elsbetiae_contig6589.15294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig6589:7909..8825+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCCCGCTCAACTGGACTTCCACTTGGAGCTCGAACCAAGGCCACT
CTGTGCAAGTCATTTCATCACCATCGCGATCATCGAGTGGGGCGATGTTG
CGCTTTTGGAGGTGGCCGTCAAGTTCAAATGCGGACATTTCGGATGCGGG
CCAGAAATGTGCGCAAAGGCGGCCGGGGCAGGGCACCTGGAGTGCCTTCA
ACTCCTACGGGCTAACAACTACCGATGGAACGCGACCACCCTCGAGAGTG
CAGCCTTCGGAGGGCATATCCACACGTTGAACTGGGCGCAGACGAAGAAA
TGCCCACGCAAAAACGACGCGATTTCTATCTTTGCCGTCATGGGCGGGCA
CCAGACCGCCATCGACTGGGCGAGAAGCAACAACTGTCGATTCGATGTGT
TCACATTCCGCGAGGCCGCTGCGGGGGGGAATCTCGACATCATGGAGGAC
CTGCACGCGAACGGTTGCTATTTCAACTTTATGTCTTGTACCGCGGCGGC
CGAGCACGGACATCTCCAAGCATTGATGTGGCTCAGGGAAAAGGGTTGCG
AGTGGAATGAATTTATTTGCTCGGGCGCTGCTGACAAAGGCCATCTAGAC
GTGCTCAAGTTTGCAAGGAGGAATGGATGCCCGTGGGATTCCACCGTGAT
TAGCTACGCTCGTGCCGAAAAACACCACGATATTGTGTCTTGGGCACTGG
AAAATGGGTGCGAAGAGCCACAGGCGTGAATGATGCCCGCTCAACTGGAC
TTCCACTTGGAGCTCGAACCAAGGCCACTCTGTGCAAGTCATTTCATCAC
CATCGCGATCATCGAGTGGGGCGATGTTGCGCTTTTGGAGGTGGCCGTCA
AGTTCAAATGCGGACATTTCGGATGCGGGCCAGAAATGTGCGCAAAGGCG
GCCGGGGCAGGGCACCTGGAGTGCCTTCAACTCCTACGGGCTAACAACTA
CCGATGGAACGCGACCACCCTCGAGAGTGCAGCCTTCGGAGGGCATATCC
ACACGTTGAACTGGGCGCAGACGAAGAAATGCCCACGCAAAAACGACGCG
ATTTCTATCTTTGCCGTCATGGGCGGGCACCAGACCGCCATCGACTGGGC
GAGAAGCAACAACTGTCGATTCGATGTGTTCACATTCCGCGAGGCCGCTG
CGGGGGGGAATCTCGACATCATGGAGGACCTGCACGCGAACGGTTGCTAT
TTCAACTTTATGTCTTGTACCGCGGCGGCCGAGCACGGACATCTCCAAGC
ATTGATGTGGCTCAGGGAAAAGGGTTGCGAGTGGAATGAATTTATTTGCT
CGGGCGCTGCTGACAAAGGCCATCTAGACGTGCTCAAGTTTGCAAGGAGG
AATGGATGCCCGTGGGATTCCACCGTGATTAGCTACGCTCGTGCCGAAAA
ACACCACGATATTGTGTCTTGGGCACTGGAAAATGGGTGCGAAGAGCCAC
AGGCGTGA
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