mRNA_L-elsbetiae_contig6589.15293.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6589.15293.1
Unique NamemRNA_L-elsbetiae_contig6589.15293.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6589.15293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6589contigL-elsbetiae_contig6589:1150..6849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size674
Cds size672
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.8395414-CDS-L-elsbetiae_contig6589:1149..12201622816727.8395414-CDS-L-elsbetiae_contig6589:1149..1220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 1150..1220 +
1691683769.368502-CDS-L-elsbetiae_contig6589:1149..12201691683769.368502-CDS-L-elsbetiae_contig6589:1149..1220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 1150..1220 +
1622816727.8516717-CDS-L-elsbetiae_contig6589:1545..16291622816727.8516717-CDS-L-elsbetiae_contig6589:1545..1629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 1546..1629 +
1691683769.383925-CDS-L-elsbetiae_contig6589:1545..16291691683769.383925-CDS-L-elsbetiae_contig6589:1545..1629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 1546..1629 +
1622816727.8653142-CDS-L-elsbetiae_contig6589:2016..21201622816727.8653142-CDS-L-elsbetiae_contig6589:2016..2120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 2017..2120 +
1691683769.3950372-CDS-L-elsbetiae_contig6589:2016..21201691683769.3950372-CDS-L-elsbetiae_contig6589:2016..2120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 2017..2120 +
1622816727.8771589-CDS-L-elsbetiae_contig6589:2397..24821622816727.8771589-CDS-L-elsbetiae_contig6589:2397..2482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 2398..2482 +
1691683769.4067578-CDS-L-elsbetiae_contig6589:2397..24821691683769.4067578-CDS-L-elsbetiae_contig6589:2397..2482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 2398..2482 +
1622816727.8869138-CDS-L-elsbetiae_contig6589:5302..54341622816727.8869138-CDS-L-elsbetiae_contig6589:5302..5434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 5303..5434 +
1691683769.4159474-CDS-L-elsbetiae_contig6589:5302..54341691683769.4159474-CDS-L-elsbetiae_contig6589:5302..5434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 5303..5434 +
1622816727.896758-CDS-L-elsbetiae_contig6589:6054..61861622816727.896758-CDS-L-elsbetiae_contig6589:6054..6186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 6055..6186 +
1691683769.425691-CDS-L-elsbetiae_contig6589:6054..61861691683769.425691-CDS-L-elsbetiae_contig6589:6054..6186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 6055..6186 +
1622816727.9073265-CDS-L-elsbetiae_contig6589:6785..68491622816727.9073265-CDS-L-elsbetiae_contig6589:6785..6849Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 6786..6849 +
1691683769.4359133-CDS-L-elsbetiae_contig6589:6785..68491691683769.4359133-CDS-L-elsbetiae_contig6589:6785..6849Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6589 6786..6849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6589.15293.1prot_L-elsbetiae_contig6589.15293.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6589 1150..6849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6589.15293.1

>prot_L-elsbetiae_contig6589.15293.1 ID=prot_L-elsbetiae_contig6589.15293.1|Name=mRNA_L-elsbetiae_contig6589.15293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=224bp
TELLRPGLHGVVGRKRRETRRDSGRRDSSGTRLRMTSAEETTLLTELWEI
ERSKSAADPPSKTWEQKETRETRLAALLTSARKPARGDPSLSSVRRESEM
PPKSTAAQIKETKHRGAAKEEIADQDSRINPGGTHGKRARQIYSMTTTQG
AEVCRIKVTRDVAVDGLVKIRQFFDAQKAPQRKPSYLESKSTRAAPSLLR
PHLLGDACEGTNETSHEEHREKR*
back to top

mRNA from alignment at L-elsbetiae_contig6589:1150..6849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6589.15293.1 ID=mRNA_L-elsbetiae_contig6589.15293.1|Name=mRNA_L-elsbetiae_contig6589.15293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5700bp|location=Sequence derived from alignment at L-elsbetiae_contig6589:1150..6849+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGAGCTGCTCAGGCCTGGCCTGCACGGGGTCGTCGGAAGGAAGAGAAG
AGAGACGAGGAGAGATAGCGGGTAAGTGGATCTTTCTCAGGGTGCGGGTG
AAGAGGCGTGTCTATGTATCTGTGTGGCAGAGATATCAAACCCTCTGCAC
ACAGCACGCGGACAGAGGCACGCACGCACAGCAGTAGTAGCGATGCACAT
CGAGACAGAAAAGGTGGGGGAGAATGGCATGCGTATTCGCCGAAAGTGGA
GTGACACAGCCCCTGTCTAAAGCCACAGAGCAAAACCGTCAGCACGCAGC
GGTCGTGATCAAAAGAGCAATGTGCCTTCAAACCCAAGCAACGTGAAACA
CCGCCGTACCTCCCCATGCACACCGATCGCATGCCGCACTGCACAGCCGA
CGTGATTCCTCCGGAACAAGGCTGCGAATGACCTCTGCAGAGGAAACGAC
GCTTTTAACCGAGCTCTGGGAAATCGAAAGGTGACATTTTGAGAAAGGTG
TGCGCACTAGACTAGATACAAAAAAAAAAAAACACGACCGAAGCCCAAGT
CTGAAGCCCGGCGCCACCAAGGCACCACTGCATAGATAATTTTATAATTT
TGCGTGAGTTGGCTGAATAGACTAAATAGATATCGAGAGAAAAGGAAGTG
CACTCTGTATAATCTAGTCCAGGACTAGGAAATCTAGACTAGACTAGTAG
CCTAGCCTTGAATTGTTCTAGTAATCGAAGTACTAGACTGGACTAGAAGT
GTCTGGAAAATTCGGCCGGGTATCGCGGCGAGCGAAGATTTGCACTCTAT
TTACTGCCTGTGTCTCCTTTCATCAATTTGCCTGTTTCTGCCTTTCTTTT
TTTCCTTTGATCAACAGAAGCAAAAGCGCCGCTGACCCACCCTCGAAGAC
ATGGGAACAGAAGGAAACCAGGGAAACCAGGCTCGCCGCGCTGCTGACCT
CGGCCAGAAAACCCGCACGAGGTAGGTATGCCTTTGATGGTACGGCTTCA
AATTTTCGGGGATGAACGTAGATACATGAAACGTGCTCCGTGCTCCGTCA
GGCAGCTCTGTCTCGCAAAAGCGAGGGATCGATTTAGTTCTCAGCAGTCC
TTCGTGCCTCGAGTTTTTTTTTTGCCGCCGAACTTTCTTCCGGAGATTCT
GAAACGCGATTTGTTTTTCAAAGTTTTACGGTTCCAAACCCACAACTATG
TGACTTCCCCTTTGCGTCATGATGCGCGAATTTTGCTCACCTCAGCAGGC
GACCCGAGCCTATCTTCGGTCCGGCGGGAGTCGGAGATGCCTCCGAAGTC
GACAGCCGCGCAGATTAAGGAGACGAAACACAGGCAAGTGGAACATAGAA
CATAGGGGTGAACGGATACATACATAAAAACAGGCTTCGTACAATAGATC
GCCCACTACGGTACTTCAGTGATGCCGTACAATAGGCGTTGCTCGCAGCC
ATTCCCGTGACGAGAATCGTCAGCAATACGTTTACGTATACGCAGAGTTT
ATCCGCCGTGTTGTCGAGACCATACAAGAAAGGAAGACTTTTAAAGGGCC
GGCCCTCTTAACCCAGTAGTAGGGACATAGCTTGTAGAGGGGGACGGGCT
CCAGACTATTTGTGTCTGATCTTTTGTTTTTGTGCTTTGTGGACCCTTCG
GGTTTATTTTTATTTTCTTTATGTTTCAGTAGTCTTAGGGTACGCTATCC
TGTGACCACGGGAATCGACCGCGTCAGTGTTGGTTTAGTACGGACTCATG
GAGGTGTATCTACTGGACAGAGAGATCAGAACGGTGTTTGATGTGAAGAC
AACACACACACACAGACCAGCAACAACAACAACAACAACAACAACAACAA
CAACAACAACACAGGGAAGCAGGAGTGGTCCCCACGCCACTCGTCGTCCA
CTTGATCATCCGACGCTTTCCCACCGTTGTCACTTCTGTAGGGCTACATC
GAACAAACATACCAACGTTTGCTTTGATTTCCCTTCCCTTTTGCCCCCCC
CCCCCCCCCCCCCCCATGACCGTGTCGGTCACGAAGCACGAACGTTTTGC
CCCGAGGGTCGTTTTTGAAAAAACAAGAACCTCTTTTCTTCTGGGTATTG
AATTCTCCCCCTGGCGCAAGGACGCACATATGGTCCGCGCACAACAACAC
GGCCAATCGCGTTTTGTGCGATAACTTTTTGTTCACAGAAATATTTGGAA
CGTGAAACAACGATATTCGTGACCGCCTCGTCGAGCTGCGTCGATAGCTG
CTGCTTTTTTTTTATTTTTGGCGAGATGCAACATTTTCGGTCGATTTTCG
CCTAACGAAGCCCCCTTTACTTGCCGCGGAACCCCCTTCAATCTCACGGA
GCCCTTTCGAATACAACTGAACCCCCACACTAGTGCAAAACAAAATGTGG
ATTTTCTCAAGAACCAGAGTTTTCCCGTATGTAGAAAAGAAAAAATACCC
ACCTGGAAATTGATGAAGGAATCGTTTGCCGCACTCTATTTGGTGGGTTG
GTTTTCTCACAGGCATAAAAGATTTCAAGCTGACCCTCTAAATCCAGTTT
TTCCCAGATTTCTATGCCAATTTTTATCATTTCGAAAAAAAAACAAATCT
GGCAAATTCCGAGATGTGTTCAAATCTGTTGAGATGTTTGGAATCGACAA
ATACAACAACCTCTCAGGATCAAGAGTTCATTTTTTCCCGGTTTTTCTCC
GACAAAAAGTCAAGGAATACAAATGTATATATTTCTCCGTCACGAGATGC
GCCTGGAGACAGGGCGTTTGCCGGTACTTTCGGGTTTCGGAACAGCCACC
AGTGTGCAGAGAAAAGTGTACCCGGGTGCTGGGAAATTATTGGCCGAATT
GATGTGCACGGGCCATACCACCCGCAACAATGAAACAACACGTATTTCGA
AGCTCTATTGATGTCAGTAGATAACCAAGAAATATACTGCCTACATAACG
ATGAACTGCCGTGTGGCACGACACGAGGAAATAAATGTGTTTCGGGTTTT
GGACTTATCGTGTTGTCTTGTGCACGCCAGCTGCAGCGACATATCACCAT
TGAAACCAATAAATGGGTCTCACGACAGAGCTTCGGCAACTAAGCGCTTT
ATCGCGAATTTTGGAGTGAGCTTGAGCTCCCCGTTTGCACTCGGTACAAT
TGACGATTGAGTTCGTCATGTCTTCAACAATGCAATGTGAACGCGCAAAG
CGCATCAGCCGCCGGCATACGTTTTCGTTCCCTGCAAGAAGATGTGTGAT
AGTGTTGGGAAGTCATCCGTCTGGTAAAACAATGATCCGCACTGAATGTC
GATACTTGGAACCTGCATATGAGGTCATTGTTTTATTCTCTTTTACCGTG
CCAACTTCGCTGAGCTTGCTACAGAGATACAATGCGAGGGTCTACCTACA
TACCTCCGGCCGCGTTGAGTCACGCTGCGAAAAATCAAGTTCAAAAATCG
GGCGGTGGTTGGTGGAAATCAAGAGACAAAATGCCTCCCAGGTTCCGACT
CCCTCGAACTTTGATTTTCTGAACGTGAAAAGATCGGAAGTCCGACGCGC
TCTCCTTTGTTCTACATGCACATCCTTCAAAATATCAAAACCAAGATCGG
ATCGCCTCTGCGTGGGTATCCCGCAGCGGTGTTTCCATTTAATTTTCGAT
CCTGTGGATAAATGCATTGTTTTTTTTGCAACGCGACAAAACGTGGTCGT
ACGCGTGACCTGGTGTTTTTTTTTTTTTTTTTTTTTTTTTCCCATTATTG
GTCCTTGTCTTCTTCCCCTCTGGCCCCCATCCTCCCCTTCTACTCTTGCT
AGACGACCCAACCGGGGTCACATAGGAGGGGGTGTGTGTGGTTACGTTTG
CACGCCACAGCCCAAACGTATGAAACACCGGCCCTTTCGTAACATACGGC
GCCTGTTGAGCGATCGATGCTCCCGAACATTCTACTGCGCTGGAACCGCG
GGAAGCAGTTCTTGGAATATGAAGTGTGATGGTGTTGTTCGGAGTGAAGA
AAGGAAGGAGGGAAGGGAACACGTTGTCCTATTAGTTATACAAACACGAA
GCAGGAGAAGTAGATATTGCTCACAGCGAAAACCGAGCTGTTGACGTGTA
TTCCCCACCCTCCTGGTCCCTTTCACCTTCGTGTTGATCCCTACTTGGTA
CAGGGGCGCGGCCAAGGAAGAGATAGCGGACCAAGACTCTCGCATTAACC
CAGGTGGAACGCATGGCAAGAGGGCACGGCAGATATACTCCATGACAACC
ACGCAAGGCGCGGAGGTCTGCCGGATCAAAGTCACGTACGTATCTTGGGA
ATGATTGGCGTGATTTCTTGCAGTTTCAGGCGAAGCAAGAACTATCGTCT
TGACAGCATCTACATCGTTGCGAACGTCAACTCGTTTCGCACTATAGGGT
AGATGCCCCAGTTGAGATCTAGGATTGGCGCGAGTTCGGGAAAGGTTTCA
AGGCTGTGTTTACGTAGTAGGGTATGGTAAATTCGGGTAGGGTATCAAGG
GTAGTACTAAACCTACCCCCGGGTGGGGTATAGGGGGTCGGGTACTAACC
CGACAAGGGTAGAGTATCGAGGGAAGTACTAAACCTACCCGAGGGGTCTG
GTAGGGTATTGACAGTCGTACAAGGGCTACCCGAGAGTAGAGTATACCCT
GCCCGATACCCTACCCGCGCGGGTAGGGTATCGAAAGTCGCACAAAACCT
TCCCGAGGGATCGGGTAGGGTATCGAACGTCGTACTAAACCTACCCGAGA
GTGTAGTATTTTCGGGTAGCGGGTAAATACCCTACTAAACACAACCTTGA
AAAGGTTTCAAAATCGTCTTGAAACCAAAGCCATTTTTGTGTCGGTTTCC
CTCTTTATTTTTGGAACTCCTGCTCTCTCCTGCATGCTTGACGATTGAAA
CGCAGGCGCGACGTGGCGGTCGATGGGTTGGTGAAAATAAGGCAGTTTTT
CGACGCACAGAAAGCCCCGCAGAGGAAGCCAAGCTACCTCGAATCGAAAT
CGACGAGGGCTGCTCCATCGCTCCTGCGCCCACACCTGTGGGTCGCACAA
GAAGTGTAGTCCCCGGCAGGCGTATTGATGTCGAATGCTTCACCATCCGC
GCTCCTTTGTGTGCCCGTTTGACCCACCAGTTAAGGTGTGGCATGAAACC
CTGCCTTGCCCCGGTACTGCAGTTCCAATACTTTTCAACTACTGTGGTCT
ACATGCTTGCTCCACGCATGCATGGGGGAGTCGGTCCTTGTGTCTCGAGG
CACACGACCTTCCCGTGGTACAGCTCTTTGTGACGCTGCCGTGTGAACGT
TGAGTTCCGCCCAGGGCCCCGAGTATGGGGGGGGTTCTTCTGTACGCAGC
AGAGGGGAACCACTTGAACCAAGTGTATAACACAGCCAGCATGTACCATA
GATCTGAGGCGTAAACCACAGTTGCGTTTGGCATTGCCGTCCTATATGTA
TACAGTAATATACAGTAAAGTAGTAAATAGTCCAACGTGATGAAGAAAAT
TGTGAATGTCGGCGACCTTCCCAGTCGCGCTCTTTGCACGAGACGAAAGC
CACGCTCGTGCTGGCTACTTGCTTCTATCGCCGAAGCTTTTTTTTTAATG
AACCTAACTTCGGCTGCAATGTCTCTTGCCGAGCAGGCTCGGCGATGCAT
GCGAGGGAACTAACGAGACGTCACACGAAGAGCATCGGGAAAAGAGGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6589:1150..6849+

>mRNA_L-elsbetiae_contig6589.15293.1 ID=mRNA_L-elsbetiae_contig6589.15293.1|Name=mRNA_L-elsbetiae_contig6589.15293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1344bp|location=Sequence derived from alignment at L-elsbetiae_contig6589:1150..6849+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGAGCTGCTCAGGCCTGGCCTGCACGGGGTCGTCGGAAGGAAGAGAAG
AGAGACGAGGAGAGATAGCGGACAGAGCTGCTCAGGCCTGGCCTGCACGG
GGTCGTCGGAAGGAAGAGAAGAGAGACGAGGAGAGATAGCGGCCGACGTG
ATTCCTCCGGAACAAGGCTGCGAATGACCTCTGCAGAGGAAACGACGCTT
TTAACCGAGCTCTGGGAAATCGAAAGCCGACGTGATTCCTCCGGAACAAG
GCTGCGAATGACCTCTGCAGAGGAAACGACGCTTTTAACCGAGCTCTGGG
AAATCGAAAGAAGCAAAAGCGCCGCTGACCCACCCTCGAAGACATGGGAA
CAGAAGGAAACCAGGGAAACCAGGCTCGCCGCGCTGCTGACCTCGGCCAG
AAAACCCGCACGAGAAGCAAAAGCGCCGCTGACCCACCCTCGAAGACATG
GGAACAGAAGGAAACCAGGGAAACCAGGCTCGCCGCGCTGCTGACCTCGG
CCAGAAAACCCGCACGAGGCGACCCGAGCCTATCTTCGGTCCGGCGGGAG
TCGGAGATGCCTCCGAAGTCGACAGCCGCGCAGATTAAGGAGACGAAACA
CAGGCGACCCGAGCCTATCTTCGGTCCGGCGGGAGTCGGAGATGCCTCCG
AAGTCGACAGCCGCGCAGATTAAGGAGACGAAACACAGGGGCGCGGCCAA
GGAAGAGATAGCGGACCAAGACTCTCGCATTAACCCAGGTGGAACGCATG
GCAAGAGGGCACGGCAGATATACTCCATGACAACCACGCAAGGCGCGGAG
GTCTGCCGGATCAAAGTCACGGGCGCGGCCAAGGAAGAGATAGCGGACCA
AGACTCTCGCATTAACCCAGGTGGAACGCATGGCAAGAGGGCACGGCAGA
TATACTCCATGACAACCACGCAAGGCGCGGAGGTCTGCCGGATCAAAGTC
ACGCGCGACGTGGCGGTCGATGGGTTGGTGAAAATAAGGCAGTTTTTCGA
CGCACAGAAAGCCCCGCAGAGGAAGCCAAGCTACCTCGAATCGAAATCGA
CGAGGGCTGCTCCATCGCTCCTGCGCCCACACCTGCGCGACGTGGCGGTC
GATGGGTTGGTGAAAATAAGGCAGTTTTTCGACGCACAGAAAGCCCCGCA
GAGGAAGCCAAGCTACCTCGAATCGAAATCGACGAGGGCTGCTCCATCGC
TCCTGCGCCCACACCTGCTCGGCGATGCATGCGAGGGAACTAACGAGACG
TCACACGAAGAGCATCGGGAAAAGAGGTGAGCTCGGCGATGCATGCGAGG
GAACTAACGAGACGTCACACGAAGAGCATCGGGAAAAGAGGTGA
back to top