mRNA_L-elsbetiae_contig658.15282.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig658.15282.1
Unique NamemRNA_L-elsbetiae_contig658.15282.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig658.15282.1 vs. uniprot
Match: D8LC54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC54_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 2.720e-108
Identity = 274/654 (41.90%), Postives = 333/654 (50.92%), Query Frame = 2 
Query:  308 DGVRASVGREEGLLQAVCELALASTRAPPGGGVTWAEYGLPEDCQRTALGILTSLVSRHPGNQQACLAQCTVRGAPMSVTVHGQKQFVSAEPRNVVDVFLELWLAASSAKDGVAAAAAAAEGADAKAGGRRTAVAEEVALLDRALDAFLVGNTQWCKAVLAGVSSMHAAAAANLGXXXDPGKATRRSAGASDWNQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMSSVLNRGLLCARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLAAALCLRLLRMVLQAGLGDARALAAGVGIPT---------EGARRQEEEAARARLEPSAQDGGEDDGQEGLPMDELGDSSAHAPRSEDGRRGGGPRNXXXXXXXRGRVRCGPPLTPALEVAVRLLADGYGVAVMFQTGGSQDGNEDYACLPSDLSHYLMTLGELLVTWLS---PQGVGPVLSQRLLASGSSWALLRSIGRAIRPDLARKGESPEKRRHSQEHRSIPATADAASSTSS-----AEDPSLAYLHAVVAVVIGSFLCCGEGSLASETLAVGVRTHVGVFEFCRALDAASDWVAFAWPAA-----TFPGAAAGGGGRRSPVPAFWALAGDCTFSAGMVDIVQAAQKTMIRHIDAGAAAS 2203
            D V ++VGREEGLL+AVCELALAS  AP GGG TW+EYGLP DCQR+A+ +L  LV+RHP NQ                                                                          VALLDR LDAFL GNT+WCK+VLAGV++ HA+AA       D   A+R S+  +    P                                         VMS+V   GLLC R+                                   PLAAAL LRLLR VLQAG  DARA+AA VG+PT         E AR   E  +  R EPS  +G  ++ Q G            A  S+    GG  R          RVRCGPPLTPALEVA+RLLADGY  AV  QTG  +   E+    PSDL+HYL++LGEL++TWLS    +GVGP LS+RLLASGSSW LLR+ GRA RPDLAR+   P    H +E     A A AA +TS+     ++DPSL+YLHAVVA+V+GSF+  G  +LAS  LA G+  +VG+FEFCR LD+ASDW+AFAWPA      T PG +  G  R   VP+FWALAGD TFS+ +V+I+Q AQ TMI  I  G + S
Sbjct:   31 DEVLSAVGREEGLLEAVCELALASPLAPAGGGPTWSEYGLPADCQRSAMEVLAVLVARHPANQ--------------------------------------------------------------------------VALLDRTLDAFLSGNTEWCKSVLAGVAAKHASAA----RLED---ASRSSSPPASTGNPSSVPRSNDHVSVANGTSKERDVGGVA---------------VMSTVAKIGLLCVRASSAAAPQSSKPGETEANGGGGEDD-----------PLAAALRLRLLRRVLQAGGADARAIAASVGLPTGAAAVRRGGERARESSEGESNGREEPSGVEGPIEEQQRGGXXXXXXXXXXXA--SDGNGEGGSGR----------RVRCGPPLTPALEVAMRLLADGYKCAVTRQTGVLEAEGEERRSPPSDLTHYLISLGELVLTWLSLAPAEGVGPALSRRLLASGSSWTLLRTFGRAFRPDLARRDVPPGNGDHIEEGHDA-AAASAADATSADGRRLSDDPSLSYLHAVVAMVVGSFVSSGS-NLASRALAAGIERYVGLFEFCRILDSASDWIAFAWPATAMHTPTHPGGSMAGEMR---VPSFWALAGDSTFSSRLVEIIQTAQMTMIDLIIKGGSES 560
[Close]
BLAST of mRNA_L-elsbetiae_contig658.15282.1 vs. uniprot
Match: A0A6H5JB63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB63_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 9.040e-64
Identity = 189/424 (44.58%), Postives = 219/424 (51.65%), Query Frame = 2 
Query:   89 GWSGQVAVGRIRAALSLVSALVGCRR--------EEPGAAAAAGTAGTAGEKHGFVAXXXXXXXXXXXXXXXXXXXXXXXADGVRASVGREEGLLQAVCELALASTRAPPGGGVTWAEYGLPEDCQRTALGILTSLVSRHPGNQQACLAQCTVRGAPMSVTVHGQKQFVSAEPRNVVDVFLELWLAASSAKDGVAAAAAAAEGADAKAGGRRTAVAE-----EVALLDRALDAFLVGNTQWCKAVLAGVSSMHAAAA--ANLGXXXDPGKATRRSAGASDWNQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMSSVLNRGLLCARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLAAALCLRLLRMVLQAGLGDARALAAGVGIPTEGA--RRQEEEAARAR 1309
            GWSGQV + RIRAALSLVSALVGC R        E P  AAA       G+K G  A                        + V ++VGREEGLL+AVCELALAS  AP GGG TW+EYGLP DCQR+A+ +L  LV+RHP NQ +CL++C VRGAPMSVT+HGQKQ VS+EPRNVVD  LELWLAASSA +  A AAA              A  E     EVALLDR LDAFL GNT+WCK+VLAGV++ HA+AA   +      P  +T   + AS  N                                           VMS+V   GLLC R+                                   PLAAAL LRLLR VLQAG  DARA+AA VG+PT  A  RR  E A  +R
Sbjct:  456 GWSGQVPIPRIRAALSLVSALVGCGRQVGVTVSEEAPMVAAA-------GDKQGLSAGLGATASTAAVA-----------GNEVLSAVGREEGLLEAVCELALASPLAPAGGGPTWSEYGLPADCQRSAMEVLAVLVARHPANQ-SCLSRCQVRGAPMSVTLHGQKQLVSSEPRNVVDALLELWLAASSAMEDGATAAAXXXXXXXXXXXETAADNEINATAEVALLDRTLDAFLYGNTEWCKSVLAGVAAKHASAARIGDASQSVPPPASTGNPSSASRGND------------------------HVPVANGTSKEQDVGGVAVMSTVAKIGLLCVRASSAGAPRSSTRGETEADGGGGEDD-----------PLAAALRLRLLRRVLQAGGADARAIAASVGLPTGAAAVRRGGERARESR 825
[Close]
BLAST of mRNA_L-elsbetiae_contig658.15282.1 vs. uniprot
Match: A0A6H5JC49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC49_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.350e-58
Identity = 130/243 (53.50%), Postives = 166/243 (68.31%), Query Frame = 2 
Query: 1511 VRLLADGYGVAVMFQTGGSQDGNEDYACLPSDLSHYLMTLGELLVTWLS---PQGVGPVLSQRLLASGSSWALLRSIGRAIRPDLARKGESPEKRRHSQE-HRSIPATADAASSTSS---AEDPSLAYLHAVVAVVIGSFLCCGEGSLASETLAVGVRTHVGVFEFCRALDAASDWVAFAWPAA-----TFPGAAAGGGGRRSPVPAFWALAGDCTFSAGMVDIVQAAQKTMIRHIDAGAAAS 2203
            +RLLADGY  AV  QTG  +   ++    PSDL+HYL++LGEL++TWLS    +GVGP LS+RLLASGSSW LLR+ GRA RPDLAR+   P      +E H +  A+A AA+S      ++DPSL+YLHAVVA+V+GSF+  G  +LAS  LA G+  +VG+FEFCR LD+ASDW+AFAWPA      T PG +  G  R   VP+FWALAGD TFS+ +V ++Q AQ TMI  I  G + S
Sbjct:    1 MRLLADGYKCAVTRQTGVLEAEGDERLSPPSDLTHYLVSLGELVLTWLSLSPAEGVGPALSRRLLASGSSWMLLRTFGRAFRPDLARRDIPPGNAEQIEEGHNAGAASAAAATSADGRRLSDDPSLSYLHAVVAMVVGSFVSSGS-NLASRALAAGIERYVGLFEFCRILDSASDWIAFAWPATATHTPTHPGGSVAGEMR---VPSFWALAGDSTFSSRLVKMIQTAQMTMIDLIIKGDSES 239
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig658.15282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LC54_ECTSI2.720e-10841.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB63_9PHAE9.040e-6444.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JC49_9PHAE1.350e-5853.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig658contigL-elsbetiae_contig658:1028..8058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size3657
Cds size1890
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig658.15282.1prot_L-elsbetiae_contig658.15282.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig658 1877..6826 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.4496996-UTR-L-elsbetiae_contig658:1027..15231622816726.4496996-UTR-L-elsbetiae_contig658:1027..1523Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig658 1028..1523 +
1691683768.3215392-UTR-L-elsbetiae_contig658:1027..15231691683768.3215392-UTR-L-elsbetiae_contig658:1027..1523Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig658 1028..1523 +
1622816726.4663363-UTR-L-elsbetiae_contig658:1837..18761622816726.4663363-UTR-L-elsbetiae_contig658:1837..1876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig658 1838..1876 +
1691683768.336222-UTR-L-elsbetiae_contig658:1837..18761691683768.336222-UTR-L-elsbetiae_contig658:1837..1876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig658 1838..1876 +
1622816726.5662835-UTR-L-elsbetiae_contig658:6826..80581622816726.5662835-UTR-L-elsbetiae_contig658:6826..8058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig658 6827..8058 +
1691683768.4194672-UTR-L-elsbetiae_contig658:6826..80581691683768.4194672-UTR-L-elsbetiae_contig658:6826..8058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig658 6827..8058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.482079-CDS-L-elsbetiae_contig658:1876..20591622816726.482079-CDS-L-elsbetiae_contig658:1876..2059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 1877..2059 +
1691683768.3489614-CDS-L-elsbetiae_contig658:1876..20591691683768.3489614-CDS-L-elsbetiae_contig658:1876..2059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 1877..2059 +
1622816726.4967375-CDS-L-elsbetiae_contig658:2789..32301622816726.4967375-CDS-L-elsbetiae_contig658:2789..3230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 2790..3230 +
1691683768.3582387-CDS-L-elsbetiae_contig658:2789..32301691683768.3582387-CDS-L-elsbetiae_contig658:2789..3230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 2790..3230 +
1622816726.5075703-CDS-L-elsbetiae_contig658:3281..36771622816726.5075703-CDS-L-elsbetiae_contig658:3281..3677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 3282..3677 +
1691683768.367543-CDS-L-elsbetiae_contig658:3281..36771691683768.367543-CDS-L-elsbetiae_contig658:3281..3677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 3282..3677 +
1622816726.5196908-CDS-L-elsbetiae_contig658:4205..44061622816726.5196908-CDS-L-elsbetiae_contig658:4205..4406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 4206..4406 +
1691683768.377907-CDS-L-elsbetiae_contig658:4205..44061691683768.377907-CDS-L-elsbetiae_contig658:4205..4406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 4206..4406 +
1622816726.532105-CDS-L-elsbetiae_contig658:5014..52271622816726.532105-CDS-L-elsbetiae_contig658:5014..5227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 5015..5227 +
1691683768.3915823-CDS-L-elsbetiae_contig658:5014..52271691683768.3915823-CDS-L-elsbetiae_contig658:5014..5227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 5015..5227 +
1622816726.543922-CDS-L-elsbetiae_contig658:5934..60761622816726.543922-CDS-L-elsbetiae_contig658:5934..6076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 5935..6076 +
1691683768.3997772-CDS-L-elsbetiae_contig658:5934..60761691683768.3997772-CDS-L-elsbetiae_contig658:5934..6076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 5935..6076 +
1622816726.5538328-CDS-L-elsbetiae_contig658:6512..68261622816726.5538328-CDS-L-elsbetiae_contig658:6512..6826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 6513..6826 +
1691683768.4112144-CDS-L-elsbetiae_contig658:6512..68261691683768.4112144-CDS-L-elsbetiae_contig658:6512..6826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig658 6513..6826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig658.15282.1

>prot_L-elsbetiae_contig658.15282.1 ID=prot_L-elsbetiae_contig658.15282.1|Name=mRNA_L-elsbetiae_contig658.15282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=630bp
MSVTVHGQKQFVSAEPRNVVDVFLELWLAASSAKDGVAAAAAAAEGADAK
AGGRRTAVAEEVALLDRALDAFLVGNTQWCKAVLAGVSSMHAAAAANLGG
GGDPGKATRRSAGASDWNQPGGSRSGGGGCGGGSAGQNGGRSNGSTGSPD
DDGGTVVGGVSVMSSVLNRGLLCARSFSSSSSSSSSSFSPGPTSNGSATT
VVGNGGGGDDDPLAAALCLRLLRMVLQAGLGDARALAAGVGIPTEGARRQ
EEEAARARLEPSAQDGGEDDGQEGLPMDELGDSSAHAPRSEDGRRGGGPR
NRDGDGGGRGRVRCGPPLTPALEVAVRLLADGYGVAVMFQTGGSQDGNED
YACLPSDLSHYLMTLGELLVTWLSPQGVGPVLSQRLLASGSSWALLRSIG
RAIRPDLARKGESPEKRRHSQEHRSIPATADAASSTSSAEDPSLAYLHAV
VAVVIGSFLCCGEGSLASETLAVGVRTHVGVFEFCRALDAASDWVAFAWP
AATFPGAAAGGGGRRSPVPAFWALAGDCTFSAGMVDIVQAAQKTMIRHID
AGAAASARPPASAQGSDSAGDGGGGGRREACEQLLRRQQARIEELERRLI
LPAAAGAAPPVDGVVARAAGGSERPTLTI*
back to top

mRNA from alignment at L-elsbetiae_contig658:1028..8058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig658.15282.1 ID=mRNA_L-elsbetiae_contig658.15282.1|Name=mRNA_L-elsbetiae_contig658.15282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7031bp|location=Sequence derived from alignment at L-elsbetiae_contig658:1028..8058+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGGAGAGAGCGGCGTGGGCACCCCCCACGCTGCGTCGCCGCCCAGCG
GCGGCGAGCAGGCCGCCGGGGCTGAGGGGACCGGAGTCGGCTGGTCGGGC
CAGGTCGCGGTCGGCCGGATTCGCGCGGCCTTATCCCTTGTGTCGGCGCT
TGTGGGCTGCCGCCGCGAAGAGCCTGGCGCTGCCGCCGCCGCCGGAACGG
CCGGCACGGCGGGCGAAAAGCACGGCTTCGTTGCGGCGGCGGGCTCGAGG
GCTGCTGCTGGAGAGGACGAGGCGGCTGCTGTGGCGGCGGCGGCTGCGGC
TGCGGCTGACGGCGTGCGGGCGTCGGTCGGGAGGGAGGAAGGGCTGCTGC
AAGCGGTCTGCGAGTTGGCGCTGGCGTCGACGCGCGCCCCCCCGGGCGGC
GGGGTTACGTGGGCGGAGTACGGCCTGCCGGAGGACTGCCAGAGAACCGC
GCTGGGGATACTGACGAGCCTCGTCTCCAGACACCCCGGGAATCAGGTAC
GAGGTGTGCTCGTGTCCTGGTGTCCTCGTGCCTCTGCTGTTCGGGGTAGA
TACTCATTGTTTGGCTTCGGCCGGGATATCGTGTGGTGGCCCCGCTATTT
TTGGCCCAGCGTGTGTCTGGCGCCCAGGATGCCGGGCTTGAATTAGTGAA
TTAGTCCCGAATTTTCTGCCCGTCCTCCTTAGAGAACACAGCCCTTTGCT
CTTCCGCCCGCCTCCGTCTCACCCCCTGCTATGCTCGGTGTGTGTGTGTG
TGCGTGTATGTGTTTGTGTGTGCCGTTGTCGTCGACGGCGGTGCCGGCGC
GCGGCGAGAGCAGGCGTGCCTCGCCCAGTGCACTGTCCGGGGGGCTCCGA
TGTCTGTGACGGTCCACGGGCAGAAGCAGTTCGTCAGCGCGGAACCCCGG
AACGTCGTCGACGTCTTCCTCGAGCTCTGGCTGGCGGCCTCGTCGGCAAA
GGACGGGGTGGCGGCGGCGGCGGCGGCGGCGGAAGGAGCCGACGCGAAGG
CTGGCGGGAGACGAACGGCCGTCGCCGAGGAGGTACGTACGTATTCGCAG
CCGTCTACCGCTGTGCATGGCGGTCGGGAATAAGCCTTGCTTACAGCGAA
TTTTTTCGGGGGTCGCCGGCGGGGTTGAGGACGGAGGACGAGGAGGAGGA
GGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGAAGAAAAATGCTTCAGCGC
GTTTTGAACACGTAAAATATATCGCGACCTGGTGTTGAAGCGCACGTCGG
TGGTGACGGCACCACCTGCATGTCCCTTGGACGGAGTCGGTCGACCTTTG
AGCGTGCTACACTTGTTTTCGGCGTTTCGAGGCTCGGGGCTTGGTGGCTT
GTGCGTCGCTGGTTGTTGGTCCACCTCTCTTTACGAAGCGCGCTGTGTGA
CGTCCGCTTTTCAATAACTACACTGACAGGTGTGTGTGTGTGTGTGTGAC
CGACGGAATAAAACGACCCTGCCGCCCTGAATGTCCCACGCACACCTCAC
CTTTTTTTTCTCTTCTTTTTTTCTCTCTGGTGAATGCGTCATGATCCCCC
CCCCCCCCCCCCCCCCCCCAACCACACCCCAATTTTTTTTTTCTCTTTGC
TTTTAGTGCTATTTTGTGATCGCATGTGNNNNNNNNNNCCCCCCCGACTT
CCCCCCCCTCTCCCCCTCTTTTTTCCCTTCTCTTTTTTCCCTCCCTTGTT
TTTCCTTCTTCCCCCCCCCCCCCCCCCCCCCCCCCCGTTTATCTCTTTTT
TTTTAAGCACAGGTGGCGTTGCTGGACAGGGCCCTCGACGCGTTTCTCGT
CGGCAACACCCAGTGGTGCAAAGCTGTCCTCGCCGGAGTGTCTTCGATGC
ACGCCGCCGCCGCCGCAAACCTTGGAGGCGGGGGTGATCCCGGTAAGGCC
ACGCGCCGTTCCGCGGGGGCCTCCGACTGGAATCAACCGGGTGGGAGTCG
CAGCGGCGGCGGCGGCTGCGGCGGCGGCAGTGCTGGGCAGAACGGGGGCA
GGAGTAACGGTAGCACGGGCAGTCCCGACGACGACGGTGGCACGGTTGTC
GGAGGCGTCTCCGTGATGTCTTCTGTCCTCAACAGAGGGCTCCTCTGCGC
CCGATCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTTCCCCTG
GACCCACGTCGAACGGCAGCGCTACTACTGTGGTCGGCAACGGTGGCGGT
GGTGTGGGCGGCGAGAGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGCGG
AGAGGACGACGACCCCCTGGCCGCCGCCCTTTGCCTCCGCCTCCTGCGGA
TGGTCTTGCAGGCCGGCCTCGGCGACGCGCGCGCTCTCGCCGCCGGCGTC
GGCATTCCGACGGAGGGGGCCAGAAGACAGGAAGAGGAGGCTGCTAGGGC
CAGGCTGGAGCCGTCCGCGCAAGACGGGGGCGAGGACGACGGGCAAGAAG
GCTTGCCCATGGACGAGCTTGGGGATTCGAGCGCGCACGCGCCGCGGTCG
GAGGACGGGAGGCGGGGCGGGGGCCCTCGGAACCGGGACGGCGACGGCGG
GGGGCGGGGTAGGGTAAGGTGCGGGCCCCCTCTGACGCCGGCCCTGGAGG
TTGCCGTGAGGCTGCTGGCAGACGGCTACGGTGTGGCGGTCATGTTTCAG
GTGAGAGACGGAGAGGTAGGTGTTTTTCTCTACACGTCTATCGGTGTAAA
AACCCCGGCGATCTCCGACAACGGTTACATACATATCTCCGACAGTTTTT
TTTTTTTCTTCTTACGGATACCCACACGTCTACCAGCGCGCTCAGACGAG
GGTCCGAGCAAATTCAGAAGCAGCGCACCATTTTGGTCGCTGCGTAGTAA
CCGCAGTGGTATGCTTTTTTTTCTACCAGTGTGCTGCGTCTATCCCTGGG
CACAGGCTTGCGATAGCGATACTGACGACGCCGCAGCGGCCGCCCGACCC
ACCTCATCAGCGTGCGATGCCGACAAAGCGGGTACACTCTTTTAGTAGCC
GCATTTATTTGAAGTTTTTTTTTCTTGCAAGGGATCGTAAACGTCTTGGT
TCTGCACCAATAAGCAGCAGCGCCGGCCGGCCTTCACACCACCCACCGCC
CACCACCGCCGCCGCCGCTGTCGTTGCCGTCGCCGCTCCTCGTCGGCTCT
CGCTCCCTCGAAAAAACACACTACACAGACCGGCGGCTCGCAAGACGGGA
ACGAGGACTACGCGTGCTTACCCTCGGACCTGTCGCACTACCTGATGACC
CTGGGCGAGCTCCTTGTGACCTGGCTCTCTCCTCAAGGGGTGGGGCCGGT
GCTGTCGCAGAGACTGCTGGCGAGCGGCTCGAGCTGGGCATTGCTGCGCA
GCATCGGGAGGGCTATCCGCCCTGACCTGGTGCGTGCCGGTAATTTAGAA
ACGTTGTGAGGTGGGGGCGCGGGCGGGCGGAAAGTACCTACGTACCTACG
CACGGGGGGTAACAAAAAAGGAGAAGTTAGGATGGTGGTGCAAACCATCC
CACGTGGACGGGGGGTGGACTGATTGATGCATGCAGGTGCTCTCTCTCTC
TCACGTACAATCCGTACAGGGCGCTCTCGGTGTCGGCCGGTGCCTCGAGT
ACTGGTAGGAACGCAGCGGGGCTCCGTGGCTGACTGTCTGTGTCTCGAAA
CGGATGCGTGTTGGATGGGCACCGACAAAGTCAAGCAGCACATTCCCAGT
ACCCCCCACCCCCCCCCCCTCCCCTCCCGTCCCCCCTTGCTTCCGGCGTC
GATTGGCAACAACGGGTCTCAGCTTTCTTTCGGAGAATCTAGAACGACCT
GACGCTTTTGCCTGAGTGTGGTTTGATTCACGGCTTGGTTTTCGTATCGG
CGATGCTGTCTGCATGTCTCGTCATCCACGGCTGACTTTTCATTTTCTTT
CGTGTCGGAGCAAACACTGCTGCTGCTGCCCCCCCTTCTCTCAACCCTTC
ATTTTTTCACGCCGTGTTTTTCACGTTTGGAGCTCAGGCGCGAAAAGGCG
AATCGCCGGAGAAGCGACGGCACAGCCAAGAGCACCGCAGCATACCTGCT
ACTGCTGATGCCGCGAGTAGTACGTCGTCAGCAGAAGACCCGTCACTCGC
CTACCTCCACGCCGTCGTTGCTGTGGTTATCGGCAGCTTCTTGTGCTGCG
GGGAGGGCAGCCTGGCGAGCGAGACACTGGCTGTCGGCGTGCGCACGCAC
GTGAGTTCTCAGTTAGCGGTGGGAGGCTGCTCAATAACAACGATTATGGA
AGCTCGGAAGCTCGCTGTATGACGTTTTTTTTTTTGTCAGGGTAGTTATG
TACGACCTTGGGAGCGCTACGACGGAGCCCTTTTTTGTGTCGGGATGGCC
ATTGGACTTGCTACAGAGTCCGGTTGAGCACTCGAGAACATTCGTGCGTT
TGATCACGCGAACGAGTGGGGTGGCGCGTGACCGTGACCTTGGTCGGAGG
ACGACAGCGCTGGTTTGTTGTCTGTCTGTCTGTCGCACACGCTCCAGGAA
AAGCCGAACCCGTCAGCCGAGCTGAAATTTCGCCCAAGAAACAACGCGGT
CTGGCAGAGAAAAAGTGTTGGGCGTGACTGTTCCTGAGACCAACTCCATT
TGCGAGATGTGCAGCGAAGCTGAAAGGTTGAGGCACCGCCGTCCGCAACT
GCTGTGAGGCGGGATTTATTATTCAAGAGAACAAGCCGATACACATATAC
TTTGGGTATGTGTGTAGGTGTATCGAGAAGTTTTGAAGCCAGCAGGAGTC
ACGCCCCACCCCCCCCCCCCTAAGAATCCAAGTGACCACCTCGTCAGGGC
CTCCCCAGCACCAGCGATACTCCTGCTATTTACCCCCACGCTTGATTTAC
AACATGCCTCTTTCTCTCTCGCGCTGTGTTCGCTTTCTGTGCCTTCCTTG
GCTCTAGGTTGGCGTGTTCGAATTTTGCAGGGCGCTTGACGCAGCAAGCG
ACTGGGTTGCGTTCGCTTGGCCAGCAGCTACATTCCCTGGGGCCGCGGCA
GGAGGGGGAGGGCGCAGAAGCCCCGTCCCCGCGTTCTGGGCGTTGGCAGG
TGCGGGGTGTTTGTTTTTCCCAGCGCATCTTGTTCTTCCTCTCCGCCTTC
GTTTTTATGGTGATGGTTTCGTTCCGTGGCTTGCTGGAATGCGGTAATAT
ACCGTGGTAGTACGAGACTCTTTTCTGCAACATTGCATGCAATCCGCGGG
GCCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGTACTGGCT
GTCGTCACCGGGGAGTCGTGCGTCGGCAATGCTTGCTGTTGGGCCAGGGG
TGGTCGGTCGGTCGGTCGGTTGTCCACGCATCCACGGGGCCCCCATCGTC
TGGCGTCGTCAAGTATTGATCTTCCCCAATTCAATTGAGATCTCGGATGG
ATCCATCAGCTGGAAAAAGCTCGCGTGTCTTCGTCGTCGTCGTCGACCCC
GCCTCTTCCTTTGCACACCCACCCATCACAACCAGGCGACTGCACCTTCT
CCGCCGGCATGGTGGACATAGTCCAAGCCGCGCAGAAGACAATGATCCGC
CACATCGATGCGGGAGCTGCTGCCAGCGCTCGACCCCCTGCTTCAGCACA
GGGAAGCGATTCGGCGGGGGACGGAGGCGGCGGAGGCCGGCGAGAGGCGT
GCGAGCAGCTGCTGCGGCGCCAGCAAGCAAGGATCGAGGAGCTCGAACGC
CGCTTGATCCTCCCCGCTGCTGCCGGGGCCGCCCCCCCTGTCGATGGTGT
AGTAGCTCGTGCCGCCGGAGGCAGTGAGCGCCCTACTCTCACCATCTAGT
TTGGGGCTGGCTAGCTAGCGTCGGCGGGAGGGGAGCGCTCACTAAACACC
TACTGGGGTGCCGGGTTCGAAGCTGCTGGTGGTCTCGGAGGTTGCGGTGT
GTTGTTCGTCGGGGTTTATCTCCGCGTGCGTGTCTATGGCTGCGTGGAGG
TATTTGCTTTGGGCGTGGAGGTCCACAAATAGAAATAGGCACCCTCGCTG
CTTCTGCGCGGTGCAGCAGTGCGATTTTGCGGGTGTGAGTGAAGAAGGCT
GGCTCTAAAGTCGCCGCCCGAGTTTACCCGTGTTGGCAGGCACGCAGGCA
GCACTCTTTTTTGACAGCCATGTAGCGTGTTCGTTTTCTTGGCTCCACGG
CTAGTAACCTGTGGCATGTGCAAACGTCGCGGCGCTGCCGATGAGTTTGT
TTTGGTGTGCGCGAGACCCGCGCTCGCTCTCTTAGTCGTCGGGTTTAGAC
CGCCCCATGAGAACCAGCGCCGAGAAGGCCAGCGCGGGACTGATGACTGA
TTGTCGTGTGTTTTGTTTTCACCTCAGTTGACTGACCTCTAGCATGTCGC
AGCGGCGTGTTGGAGGGGGGCGGGCTACAGATAGATGCTCTCCTCCTGAC
CCTTCTTTGAGATTTTGAGGGTCGTTCTGTTCAGGGCGTGCACATTTTTT
TGTTTATCTTTTTTTCTTCATTTCGCCCATCGACCCGACCCCCCGCTCGC
TGCCCTCTGTGCTCCACTGTTTGTTCGGCGTACATGTATGAGGTTGTCAG
CCGCAGCGAAGGGTGGGAGTATTTTATTTCGTTTATGGTCCGCATTTTAT
GCGGAGTAATTGTTGCGTGTGCTCCGTTCTCGGGTTGAATGGTTTTGGCT
CACCCCTCCCCGTGGGAAAATTTGTGATCTGCTCACTGCTTGCTGTAAGT
TAAGTGCGTTATTTACCAGTACACACGTTGGTCTCGGACTCTGATATGGA
GCGAGGCACTTTTGAAAAACCATTAGACAGACGTGAGAGATGAATAGATA
CAGAAAGCCGTGAGAGATCGGCCGTAGCCTGAAACGTAGATTGTGTCGGG
CATGTCAAAGTGAATCGTTGGGTCATTGGGGGGGTGTTGAAGAGCTTCCC
GTCTTGGGAAATATGCGCAATTGCATGACAACTACGTCGTGGCACGACGG
ATACCCTCCTCTACGGGCTCCAAAATTTCGACCCACCGCCGTGCATCTGT
GTGGCCAAGTTGGTTGGACTTGAGACGGAAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig658:1028..8058+

>mRNA_L-elsbetiae_contig658.15282.1 ID=mRNA_L-elsbetiae_contig658.15282.1|Name=mRNA_L-elsbetiae_contig658.15282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3780bp|location=Sequence derived from alignment at L-elsbetiae_contig658:1028..8058+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGTGACGGTCCACGGGCAGAAGCAGTTCGTCAGCGCGGAACCCCG
GAACGTCGTCGACGTCTTCCTCGAGCTCTGGCTGGCGGCCTCGTCGGCAA
AGGACGGGGTGGCGGCGGCGGCGGCGGCGGCGGAAGGAGCCGACGCGAAG
GCTGGCGGGAGACGAACGGCCGTCGCCGAGGAGATGTCTGTGACGGTCCA
CGGGCAGAAGCAGTTCGTCAGCGCGGAACCCCGGAACGTCGTCGACGTCT
TCCTCGAGCTCTGGCTGGCGGCCTCGTCGGCAAAGGACGGGGTGGCGGCG
GCGGCGGCGGCGGCGGAAGGAGCCGACGCGAAGGCTGGCGGGAGACGAAC
GGCCGTCGCCGAGGAGGTGGCGTTGCTGGACAGGGCCCTCGACGCGTTTC
TCGTCGGCAACACCCAGTGGTGCAAAGCTGTCCTCGCCGGAGTGTCTTCG
ATGCACGCCGCCGCCGCCGCAAACCTTGGAGGCGGGGGTGATCCCGGTAA
GGCCACGCGCCGTTCCGCGGGGGCCTCCGACTGGAATCAACCGGGTGGGA
GTCGCAGCGGCGGCGGCGGCTGCGGCGGCGGCAGTGCTGGGCAGAACGGG
GGCAGGAGTAACGGTAGCACGGGCAGTCCCGACGACGACGGTGGCACGGT
TGTCGGAGGCGTCTCCGTGATGTCTTCTGTCCTCAACAGAGGGCTCCTCT
GCGCCCGATCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTTCC
CCTGGACCCACGTCGAACGGCAGCGCTACTACTGTGGTCGGCAACGGTGG
CGGTGGTGTGGCGTTGCTGGACAGGGCCCTCGACGCGTTTCTCGTCGGCA
ACACCCAGTGGTGCAAAGCTGTCCTCGCCGGAGTGTCTTCGATGCACGCC
GCCGCCGCCGCAAACCTTGGAGGCGGGGGTGATCCCGGTAAGGCCACGCG
CCGTTCCGCGGGGGCCTCCGACTGGAATCAACCGGGTGGGAGTCGCAGCG
GCGGCGGCGGCTGCGGCGGCGGCAGTGCTGGGCAGAACGGGGGCAGGAGT
AACGGTAGCACGGGCAGTCCCGACGACGACGGTGGCACGGTTGTCGGAGG
CGTCTCCGTGATGTCTTCTGTCCTCAACAGAGGGCTCCTCTGCGCCCGAT
CCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTTCCCCTGGACCC
ACGTCGAACGGCAGCGCTACTACTGTGGTCGGCAACGGTGGCGGTGGTGA
CGACGACCCCCTGGCCGCCGCCCTTTGCCTCCGCCTCCTGCGGATGGTCT
TGCAGGCCGGCCTCGGCGACGCGCGCGCTCTCGCCGCCGGCGTCGGCATT
CCGACGGAGGGGGCCAGAAGACAGGAAGAGGAGGCTGCTAGGGCCAGGCT
GGAGCCGTCCGCGCAAGACGGGGGCGAGGACGACGGGCAAGAAGGCTTGC
CCATGGACGAGCTTGGGGATTCGAGCGCGCACGCGCCGCGGTCGGAGGAC
GGGAGGCGGGGCGGGGGCCCTCGGAACCGGGACGGCGACGGCGGGGGGCG
GGGTAGGGTAAGGTGCGGGCCCCCTCTGACGCCGGCCCTGGAGGTTGCCG
TGAGGCTGCTGGCAGACGGCTACGGTGTGGCGGTCATGTTTCAGGACGAC
GACCCCCTGGCCGCCGCCCTTTGCCTCCGCCTCCTGCGGATGGTCTTGCA
GGCCGGCCTCGGCGACGCGCGCGCTCTCGCCGCCGGCGTCGGCATTCCGA
CGGAGGGGGCCAGAAGACAGGAAGAGGAGGCTGCTAGGGCCAGGCTGGAG
CCGTCCGCGCAAGACGGGGGCGAGGACGACGGGCAAGAAGGCTTGCCCAT
GGACGAGCTTGGGGATTCGAGCGCGCACGCGCCGCGGTCGGAGGACGGGA
GGCGGGGCGGGGGCCCTCGGAACCGGGACGGCGACGGCGGGGGGCGGGGT
AGGGTAAGGTGCGGGCCCCCTCTGACGCCGGCCCTGGAGGTTGCCGTGAG
GCTGCTGGCAGACGGCTACGGTGTGGCGGTCATGTTTCAGACCGGCGGCT
CGCAAGACGGGAACGAGGACTACGCGTGCTTACCCTCGGACCTGTCGCAC
TACCTGATGACCCTGGGCGAGCTCCTTGTGACCTGGCTCTCTCCTCAAGG
GGTGGGGCCGGTGCTGTCGCAGAGACTGCTGGCGAGCGGCTCGAGCTGGG
CATTGCTGCGCAGCATCGGGAGGGCTATCCGCCCTGACCTGACCGGCGGC
TCGCAAGACGGGAACGAGGACTACGCGTGCTTACCCTCGGACCTGTCGCA
CTACCTGATGACCCTGGGCGAGCTCCTTGTGACCTGGCTCTCTCCTCAAG
GGGTGGGGCCGGTGCTGTCGCAGAGACTGCTGGCGAGCGGCTCGAGCTGG
GCATTGCTGCGCAGCATCGGGAGGGCTATCCGCCCTGACCTGGCGCGAAA
AGGCGAATCGCCGGAGAAGCGACGGCACAGCCAAGAGCACCGCAGCATAC
CTGCTACTGCTGATGCCGCGAGTAGTACGTCGTCAGCAGAAGACCCGTCA
CTCGCCTACCTCCACGCCGTCGTTGCTGTGGTTATCGGCAGCTTCTTGTG
CTGCGGGGAGGGCAGCCTGGCGAGCGAGACACTGGCTGTCGGCGTGCGCA
CGCACGCGCGAAAAGGCGAATCGCCGGAGAAGCGACGGCACAGCCAAGAG
CACCGCAGCATACCTGCTACTGCTGATGCCGCGAGTAGTACGTCGTCAGC
AGAAGACCCGTCACTCGCCTACCTCCACGCCGTCGTTGCTGTGGTTATCG
GCAGCTTCTTGTGCTGCGGGGAGGGCAGCCTGGCGAGCGAGACACTGGCT
GTCGGCGTGCGCACGCACGTTGGCGTGTTCGAATTTTGCAGGGCGCTTGA
CGCAGCAAGCGACTGGGTTGCGTTCGCTTGGCCAGCAGCTACATTCCCTG
GGGCCGCGGCAGGAGGGGGAGGGCGCAGAAGCCCCGTCCCCGCGTTCTGG
GCGTTGGCAGGTTGGCGTGTTCGAATTTTGCAGGGCGCTTGACGCAGCAA
GCGACTGGGTTGCGTTCGCTTGGCCAGCAGCTACATTCCCTGGGGCCGCG
GCAGGAGGGGGAGGGCGCAGAAGCCCCGTCCCCGCGTTCTGGGCGTTGGC
AGGCGACTGCACCTTCTCCGCCGGCATGGTGGACATAGTCCAAGCCGCGC
AGAAGACAATGATCCGCCACATCGATGCGGGAGCTGCTGCCAGCGCTCGA
CCCCCTGCTTCAGCACAGGGAAGCGATTCGGCGGGGGACGGAGGCGGCGG
AGGCCGGCGAGAGGCGTGCGAGCAGCTGCTGCGGCGCCAGCAAGCAAGGA
TCGAGGAGCTCGAACGCCGCTTGATCCTCCCCGCTGCTGCCGGGGCCGCC
CCCCCTGTCGATGGTGTAGTAGCTCGTGCCGCCGGAGGCAGTGAGCGCCC
TACTCTCACCATCTAGGCGACTGCACCTTCTCCGCCGGCATGGTGGACAT
AGTCCAAGCCGCGCAGAAGACAATGATCCGCCACATCGATGCGGGAGCTG
CTGCCAGCGCTCGACCCCCTGCTTCAGCACAGGGAAGCGATTCGGCGGGG
GACGGAGGCGGCGGAGGCCGGCGAGAGGCGTGCGAGCAGCTGCTGCGGCG
CCAGCAAGCAAGGATCGAGGAGCTCGAACGCCGCTTGATCCTCCCCGCTG
CTGCCGGGGCCGCCCCCCCTGTCGATGGTGTAGTAGCTCGTGCCGCCGGA
GGCAGTGAGCGCCCTACTCTCACCATCTAG
back to top