mRNA_L-elsbetiae_contig6571.15276.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6571.15276.1
Unique NamemRNA_L-elsbetiae_contig6571.15276.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6571.15276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6571contigL-elsbetiae_contig6571:5784..6502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size719
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6571.15276.1prot_L-elsbetiae_contig6571.15276.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6571 5815..6498 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.8411374-UTR-L-elsbetiae_contig6571:5783..58141622816725.8411374-UTR-L-elsbetiae_contig6571:5783..5814Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6571 5784..5814 +
1691683767.8725185-UTR-L-elsbetiae_contig6571:5783..58141691683767.8725185-UTR-L-elsbetiae_contig6571:5783..5814Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6571 5784..5814 +
1622816725.8620257-UTR-L-elsbetiae_contig6571:6498..65021622816725.8620257-UTR-L-elsbetiae_contig6571:6498..6502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6571 6499..6502 +
1691683767.8936183-UTR-L-elsbetiae_contig6571:6498..65021691683767.8936183-UTR-L-elsbetiae_contig6571:6498..6502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6571 6499..6502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.8517966-CDS-L-elsbetiae_contig6571:5814..64981622816725.8517966-CDS-L-elsbetiae_contig6571:5814..6498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6571 5815..6498 +
1691683767.8833966-CDS-L-elsbetiae_contig6571:5814..64981691683767.8833966-CDS-L-elsbetiae_contig6571:5814..6498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6571 5815..6498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6571.15276.1

>prot_L-elsbetiae_contig6571.15276.1 ID=prot_L-elsbetiae_contig6571.15276.1|Name=mRNA_L-elsbetiae_contig6571.15276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
MAIDLETDHAVPAIKVMTALHSAFDTFDGEIIFLPGGRASTFWEKARRII
APDGPEPVDVDPGPYVYHKTTSEPRDDDGRRNPVYVQLQEIQNSRLGQEL
LRPINLFPSLGMGAAFVNVGAASRLDDAKKIFQECGGSWKKLMSTALFTG
HWGGSRNPLLFRACFDMLSRPATLDERPDETYKRFVQEEVYGISRKRPRE
ETVEETATTIGKLKRSSLSSWAGCRLP*
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mRNA from alignment at L-elsbetiae_contig6571:5784..6502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6571.15276.1 ID=mRNA_L-elsbetiae_contig6571.15276.1|Name=mRNA_L-elsbetiae_contig6571.15276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=719bp|location=Sequence derived from alignment at L-elsbetiae_contig6571:5784..6502+ (Laminarionema elsbetiae ELsaHSoW15)
CACGGAGACGGGCGACTGCCGGACGATCCGGATGGCCATCGACCTCGAGA
CGGACCACGCTGTGCCAGCTATCAAGGTTATGACGGCATTGCACTCGGCC
TTTGACACTTTTGACGGAGAGATTATCTTTTTACCTGGGGGACGCGCCTC
TACCTTCTGGGAGAAGGCGAGAAGAATCATCGCACCCGACGGCCCCGAGC
CTGTCGACGTGGATCCGGGCCCGTACGTGTACCACAAGACGACCAGCGAG
CCTCGTGACGATGACGGTCGGAGGAACCCGGTTTATGTTCAGCTGCAGGA
AATCCAGAACAGCCGCCTTGGCCAGGAGCTACTCAGGCCCATCAACCTTT
TTCCCTCGCTGGGGATGGGAGCAGCTTTCGTCAACGTGGGCGCGGCGAGC
CGGTTGGACGACGCGAAGAAAATATTCCAAGAGTGTGGGGGATCGTGGAA
GAAGCTTATGAGCACCGCACTCTTCACTGGACATTGGGGGGGGTCGCGCA
ACCCTCTGCTGTTCCGTGCTTGCTTCGACATGCTCTCTCGTCCGGCTACG
CTGGACGAGAGGCCGGACGAGACGTACAAGCGGTTCGTGCAGGAAGAGGT
TTACGGTATCAGCAGAAAACGCCCGCGCGAGGAAACTGTGGAGGAAACTG
CCACAACCATAGGCAAGCTAAAGCGGAGCTCTCTGTCATCTTGGGCTGGC
TGCCGCCTACCCTAGACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6571:5784..6502+

>mRNA_L-elsbetiae_contig6571.15276.1 ID=mRNA_L-elsbetiae_contig6571.15276.1|Name=mRNA_L-elsbetiae_contig6571.15276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1368bp|location=Sequence derived from alignment at L-elsbetiae_contig6571:5784..6502+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCATCGACCTCGAGACGGACCACGCTGTGCCAGCTATCAAGGTTAT
GACGGCATTGCACTCGGCCTTTGACACTTTTGACGGAGAGATTATCTTTT
TACCTGGGGGACGCGCCTCTACCTTCTGGGAGAAGGCGAGAAGAATCATC
GCACCCGACGGCCCCGAGCCTGTCGACGTGGATCCGGGCCCGTACGTGTA
CCACAAGACGACCAGCGAGCCTCGTGACGATGACGGTCGGAGGAACCCGG
TTTATGTTCAGCTGCAGGAAATCCAGAACAGCCGCCTTGGCCAGGAGCTA
CTCAGGCCCATCAACCTTTTTCCCTCGCTGGGGATGGGAGCAGCTTTCGT
CAACGTGGGCGCGGCGAGCCGGTTGGACGACGCGAAGAAAATATTCCAAG
AGTGTGGGGGATCGTGGAAGAAGCTTATGAGCACCGCACTCTTCACTGGA
CATTGGGGGGGGTCGCGCAACCCTCTGCTGTTCCGTGCTTGCTTCGACAT
GCTCTCTCGTCCGGCTACGCTGGACGAGAGGCCGGACGAGACGTACAAGC
GGTTCGTGCAGGAAGAGGTTTACGGTATCAGCAGAAAACGCCCGCGCGAG
GAAACTGTGGAGGAAACTGCCACAACCATAGGCAAGCTAAAGCGGAGCTC
TCTGTCATCTTGGGCTGGCTGCCGCCTACCCTAGATGGCCATCGACCTCG
AGACGGACCACGCTGTGCCAGCTATCAAGGTTATGACGGCATTGCACTCG
GCCTTTGACACTTTTGACGGAGAGATTATCTTTTTACCTGGGGGACGCGC
CTCTACCTTCTGGGAGAAGGCGAGAAGAATCATCGCACCCGACGGCCCCG
AGCCTGTCGACGTGGATCCGGGCCCGTACGTGTACCACAAGACGACCAGC
GAGCCTCGTGACGATGACGGTCGGAGGAACCCGGTTTATGTTCAGCTGCA
GGAAATCCAGAACAGCCGCCTTGGCCAGGAGCTACTCAGGCCCATCAACC
TTTTTCCCTCGCTGGGGATGGGAGCAGCTTTCGTCAACGTGGGCGCGGCG
AGCCGGTTGGACGACGCGAAGAAAATATTCCAAGAGTGTGGGGGATCGTG
GAAGAAGCTTATGAGCACCGCACTCTTCACTGGACATTGGGGGGGGTCGC
GCAACCCTCTGCTGTTCCGTGCTTGCTTCGACATGCTCTCTCGTCCGGCT
ACGCTGGACGAGAGGCCGGACGAGACGTACAAGCGGTTCGTGCAGGAAGA
GGTTTACGGTATCAGCAGAAAACGCCCGCGCGAGGAAACTGTGGAGGAAA
CTGCCACAACCATAGGCAAGCTAAAGCGGAGCTCTCTGTCATCTTGGGCT
GGCTGCCGCCTACCCTAG
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