mRNA_L-elsbetiae_contig6556.15250.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6556.15250.1
Unique NamemRNA_L-elsbetiae_contig6556.15250.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6556.15250.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 3.500e-41
Identity = 81/89 (91.01%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:   10 EEEKEEKAVFQQLADMQDDVGCLKLSRELQVLVSEVTMLLLCVSSTDSCRSLLSQPRWIALLLGLLRLGPPYAQRRALRLLRRLLPHCD 276
            E+E+EEKAVF++LADM+DD+GCLKLSRELQVLVSEVTMLLLCVSSTD CRSLLSQPRWIA+LLGLLRLGPPYAQRRALRLLRRLLPHCD
Sbjct: 3255 EKEEEEKAVFERLADMRDDIGCLKLSRELQVLVSEVTMLLLCVSSTDPCRSLLSQPRWIAVLLGLLRLGPPYAQRRALRLLRRLLPHCD 3343
[Close]
BLAST of mRNA_L-elsbetiae_contig6556.15250.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 7.820e-40
Identity = 79/89 (88.76%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:   10 EEEKEEKAVFQQLADMQDDVGCLKLSRELQVLVSEVTMLLLCVSSTDSCRSLLSQPRWIALLLGLLRLGPPYAQRRALRLLRRLLPHCD 276
            E+EK++KAVF++LADM+DD+GCLKLSRELQVLVSEVTMLLLCVSST  CRSLLSQPRWIA+LLGLLRLGPPYAQRRALRLLRRLLPHCD
Sbjct: 3669 EKEKKQKAVFERLADMRDDIGCLKLSRELQVLVSEVTMLLLCVSSTGPCRSLLSQPRWIAVLLGLLRLGPPYAQRRALRLLRRLLPHCD 3757
[Close]
BLAST of mRNA_L-elsbetiae_contig6556.15250.1 vs. uniprot
Match: A0A2D4BVF9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVF9_PYTIN)

HSP 1 Score: 53.5 bits (127), Expect = 3.380e-6
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:  112 EVTMLLLCVSSTDSCRSLLSQPRWIALLLGLLRLGPPYAQRRALRLLRRLLPHCD 276
            ++  LL  VS +  CRS LS  RW+ LLL LL +G P +QRRAL+LLRRLLP  D
Sbjct:  453 QICSLLYSVSGSLVCRSHLSSSRWLRLLLVLLEVGSPKSQRRALKLLRRLLPEVD 507
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6556.15250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCZ5_ECTSI3.500e-4191.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT07_9PHAE7.820e-4088.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4BVF9_PYTIN3.380e-656.36Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6556contigL-elsbetiae_contig6556:2349..3367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue3.2e-35
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.2830322-CDS-L-elsbetiae_contig6556:2349..25261622816723.2830322-CDS-L-elsbetiae_contig6556:2349..2526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6556 2350..2526 -
1691683766.0347435-CDS-L-elsbetiae_contig6556:2349..25261691683766.0347435-CDS-L-elsbetiae_contig6556:2349..2526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6556 2350..2526 -
1622816723.2933116-CDS-L-elsbetiae_contig6556:3268..33671622816723.2933116-CDS-L-elsbetiae_contig6556:3268..3367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6556 3269..3367 -
1691683766.046403-CDS-L-elsbetiae_contig6556:3268..33671691683766.046403-CDS-L-elsbetiae_contig6556:3268..3367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6556 3269..3367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6556.15250.1prot_L-elsbetiae_contig6556.15250.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6556 2350..3367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6556.15250.1

>prot_L-elsbetiae_contig6556.15250.1 ID=prot_L-elsbetiae_contig6556.15250.1|Name=mRNA_L-elsbetiae_contig6556.15250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
EDEEEEKEEKAVFQQLADMQDDVGCLKLSRELQVLVSEVTMLLLCVSSTD
SCRSLLSQPRWIALLLGLLRLGPPYAQRRALRLLRRLLPHCD
back to top

mRNA from alignment at L-elsbetiae_contig6556:2349..3367-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6556.15250.1 ID=mRNA_L-elsbetiae_contig6556.15250.1|Name=mRNA_L-elsbetiae_contig6556.15250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1019bp|location=Sequence derived from alignment at L-elsbetiae_contig6556:2349..3367- (Laminarionema elsbetiae ELsaHSoW15)
GAGGACGAGGAGGAGGAGAAAGAGGAGAAGGCAGTGTTCCAGCAGCTTGC
AGACATGCAGGACGACGTGGGGTGCCTCAAGCTAAGCCGCGAGCTGCAGG
TATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTGTTGA
TTCGTCACGCATTCATGGTGGGCGGGCGGCGTCACTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTGGGAATTGTTGAGAA
ACGGTATTTAATACTTTGCCGATTCCGGGCGGCCATACCACCGTCCGTGT
CACCTCGCGCTTCATGTCTACCCCCGCCGTGCCTTGCTACTGTAAAGCCA
CATTTTCAAAAGGGTACATGTAAGTAAGTAGCAATTTCGGTTGTTCACGC
TTCGAGGCGCACGCAACCGCTAGAGCCTGCCTTCTCGACTCGGCGTCTCC
TGGCCGCCCCTGACGGACTGACTGGCCCCCAAGGGTCCGCAAAGCACAAG
CACTATGTAGACTGGGGAAACTTCACGTTTTCCTCGACAGCTTTCTGGTT
GGTGAGGGCTTTCAGCAAAACGTTTTTCTGCATCGGATTTGTGGCGTTCA
CACGCCAATCAATTTCTTGAAAACATGACTTTTTTTTATTTTTTTATTAT
GTAATTGTTTTATCATAGTTGCCTGCCAACTTTTGTGATGCACACAACAC
GCTAAAATGGTCGGCGCCGTTTCGACTGACCGAACCTGGCCCCCTCTCTG
ACGCACACCGCACCACCACACCACTCTGCACCCCGGCCCGCGCTCGGTTT
CTGGCGTCGCATACACATACACACACACGCTCACCCGCCAGGTCCTGGTG
TCGGAGGTGACCATGCTGCTCCTGTGCGTCTCCTCGACCGACTCGTGCCG
TAGCCTGCTCTCCCAGCCCCGCTGGATCGCGCTCCTGCTCGGCCTCCTTC
GGCTGGGCCCCCCGTACGCCCAGCGACGCGCCCTTCGCCTGCTGCGCAGG
CTGCTCCCGCACTGCGACC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6556:2349..3367-

>mRNA_L-elsbetiae_contig6556.15250.1 ID=mRNA_L-elsbetiae_contig6556.15250.1|Name=mRNA_L-elsbetiae_contig6556.15250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig6556:2349..3367- (Laminarionema elsbetiae ELsaHSoW15)
GAGGACGAGGAGGAGGAGAAAGAGGAGAAGGCAGTGTTCCAGCAGCTTGC
AGACATGCAGGACGACGTGGGGTGCCTCAAGCTAAGCCGCGAGCTGCAGG
AGGACGAGGAGGAGGAGAAAGAGGAGAAGGCAGTGTTCCAGCAGCTTGCA
GACATGCAGGACGACGTGGGGTGCCTCAAGCTAAGCCGCGAGCTGCAGGT
CCTGGTGTCGGAGGTGACCATGCTGCTCCTGTGCGTCTCCTCGACCGACT
CGTGCCGTAGCCTGCTCTCCCAGCCCCGCTGGATCGCGCTCCTGCTCGGC
CTCCTTCGGCTGGGCCCCCCGTACGCCCAGCGACGCGCCCTTCGCCTGCT
GCGCAGGCTGCTCCCGCACTGCGACGTCCTGGTGTCGGAGGTGACCATGC
TGCTCCTGTGCGTCTCCTCGACCGACTCGTGCCGTAGCCTGCTCTCCCAG
CCCCGCTGGATCGCGCTCCTGCTCGGCCTCCTTCGGCTGGGCCCCCCGTA
CGCCCAGCGACGCGCCCTTCGCCTGCTGCGCAGGCTGCTCCCGCACTGCG
AC
back to top