mRNA_L-elsbetiae_contig6539.15240.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6539.15240.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 221 bits (563), Expect = 1.010e-72 Identity = 114/122 (93.44%), Postives = 121/122 (99.18%), Query Frame = 1 Query: 1 MSGKGKGGRGKKATSRSSKAGLQFPVGRIGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 366 MSGKGKGGRGKK+T+RS+KAGLQFPVGR+GRFLK+GKYA+R GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_L-elsbetiae_contig6539.15240.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 219 bits (558), Expect = 3.480e-71 Identity = 113/121 (93.39%), Postives = 120/121 (99.17%), Query Frame = 1 Query: 1 MSGKGKGGRGKKATSRSSKAGLQFPVGRIGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 363 MSGKGKGGRGKK+T+RS+KAGLQFPVGR+GRFLK+GKYA+R GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK Sbjct: 46 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_L-elsbetiae_contig6539.15240.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 214 bits (544), Expect = 1.230e-69 Identity = 111/119 (93.28%), Postives = 117/119 (98.32%), Query Frame = 1 Query: 1 MSGKGKGGRGKKATSRSSKAGLQFPVGRIGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 357 MSGKGKGGRGKK+TS+SSKAGLQFPV RIGR+LK+GKYATR GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+ Sbjct: 1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 119
BLAST of mRNA_L-elsbetiae_contig6539.15240.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 214 bits (544), Expect = 6.340e-69 Identity = 111/119 (93.28%), Postives = 117/119 (98.32%), Query Frame = 1 Query: 1 MSGKGKGGRGKKATSRSSKAGLQFPVGRIGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 357 MSGKGKGGRGKK+TS+SSKAGLQFPV RIGR+LK+GKYATR GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+ Sbjct: 52 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 170
BLAST of mRNA_L-elsbetiae_contig6539.15240.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 208 bits (530), Expect = 9.900e-68 Identity = 107/118 (90.68%), Postives = 114/118 (96.61%), Query Frame = 1 Query: 1 MSGKGKGGRGKKATSRSSKAGLQFPVGRIGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 354 MSGKGKGGRGKK TSRS+KAGLQFPVGRIGRF+KQGKY++R G GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK Sbjct: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_L-elsbetiae_contig6539.15240.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 200 bits (509), Expect = 1.740e-64 Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 1 Query: 1 MSGKGKGGRG-KKATSRSSKAGLQFPVGRIGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 363 MSGKGKGGRG KK+T+ S+KAGLQFPVGRIGR+L+QGKYATR GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK+ K Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_L-elsbetiae_contig6539.15240.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 199 bits (506), Expect = 6.250e-64 Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 1 Query: 1 MSGKGKGGRG---KKATSRSSKAGLQFPVGRIGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 357 M+GKGKGGRG KK+TS+SSKAGLQFPV R+GRFLK G+YA R GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKKT Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKT 122
BLAST of mRNA_L-elsbetiae_contig6539.15240.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 199 bits (505), Expect = 7.070e-64 Identity = 105/122 (86.07%), Postives = 115/122 (94.26%), Query Frame = 1 Query: 1 MSGKGKGGRG-KKATSRSSKAGLQFPVGRIGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 363 MSGKGKGGRG KK+T+ S+KAGLQFPVGRIGR+L+QGKYATR GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK+ K Sbjct: 1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKSGK 122
BLAST of mRNA_L-elsbetiae_contig6539.15240.1 vs. uniprot
Match: A0A061QUG5_9CHLO (Histone H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO) HSP 1 Score: 199 bits (506), Expect = 7.350e-64 Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 1 Query: 7 GKGKGGRGKKATSRSSKAGLQFPVGRIGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 366 GKGK GKKA SRS+KAGLQFPVGR+ R+LK+GKYATR GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG+VTIASGGVLPNIH+VLLPKK+ KK Sbjct: 5 GKGKSAAGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDKK 124
BLAST of mRNA_L-elsbetiae_contig6539.15240.1 vs. uniprot
Match: B7FZS7_PHATC (Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=B7FZS7_PHATC) HSP 1 Score: 199 bits (505), Expect = 1.190e-63 Identity = 104/121 (85.95%), Postives = 113/121 (93.39%), Query Frame = 1 Query: 7 GKGKGGRG--KKATSRSSKAGLQFPVGRIGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 363 GKGKGGRG K+ TS SSKAGLQFPVGRIGR+L+QGKYATR GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIA+GGVLPNIHA+LLPKKT+K Sbjct: 10 GKGKGGRGDKKQTTSSSSKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGNVTIAAGGVLPNIHAILLPKKTIK 130 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6539.15240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6539.15240.1 >prot_L-elsbetiae_contig6539.15240.1 ID=prot_L-elsbetiae_contig6539.15240.1|Name=mRNA_L-elsbetiae_contig6539.15240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp MSGKGKGGRGKKATSRSSKAGLQFPVGRIGRFLKQGKYATRTGAGAPVYLback to top mRNA from alignment at L-elsbetiae_contig6539:1169..1537+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6539.15240.1 ID=mRNA_L-elsbetiae_contig6539.15240.1|Name=mRNA_L-elsbetiae_contig6539.15240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=369bp|location=Sequence derived from alignment at L-elsbetiae_contig6539:1169..1537+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6539:1169..1537+ >mRNA_L-elsbetiae_contig6539.15240.1 ID=mRNA_L-elsbetiae_contig6539.15240.1|Name=mRNA_L-elsbetiae_contig6539.15240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig6539:1169..1537+ (Laminarionema elsbetiae ELsaHSoW15)back to top |