mRNA_L-elsbetiae_contig6539.15239.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6539.15239.1
Unique NamemRNA_L-elsbetiae_contig6539.15239.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6539.15239.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 6.020e-69
Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAGDKKR +KRTESYS+YIY+VLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_L-elsbetiae_contig6539.15239.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 197 bits (501), Expect = 3.020e-63
Identity = 101/116 (87.07%), Postives = 113/116 (97.41%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAGDK +K KRTESYS+YIY+VLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_L-elsbetiae_contig6539.15239.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.630e-62
Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGD-KKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA D KK+K+KRTESY +YIY+VLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_L-elsbetiae_contig6539.15239.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.380e-61
Identity = 102/118 (86.44%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDK--KRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKK G+K   RK KR ESYSTYIY+VLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_L-elsbetiae_contig6539.15239.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.120e-60
Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGD-KKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA D KK+K+KRTESY +YIY+VLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
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BLAST of mRNA_L-elsbetiae_contig6539.15239.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 186 bits (472), Expect = 4.610e-59
Identity = 96/116 (82.76%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKKAG K+  +KR E+YS+YIY+VLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
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BLAST of mRNA_L-elsbetiae_contig6539.15239.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 185 bits (469), Expect = 1.410e-58
Identity = 96/116 (82.76%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+SAKAPKKA    +  KRTE+YS+YIY+VLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
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BLAST of mRNA_L-elsbetiae_contig6539.15239.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 9.550e-58
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+A APKKAG K R  KRTESYS+YIY+VLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGK-RSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
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BLAST of mRNA_L-elsbetiae_contig6539.15239.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 182 bits (461), Expect = 2.650e-57
Identity = 100/120 (83.33%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKAPKKA--GDKKRKSK-RTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK++ AKA KKA  GDKK++SK R ESYSTYIY+VLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
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BLAST of mRNA_L-elsbetiae_contig6539.15239.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 180 bits (457), Expect = 3.100e-56
Identity = 98/119 (82.35%), Postives = 108/119 (90.76%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKAPKKAGD--KKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+ +KA KK  D  KKR  KR ESYSTYIY+VLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   35 MAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6539.15239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI6.020e-6996.55Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA3.020e-6387.07Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA1.630e-6288.03Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA1.380e-6186.44Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A836CJT3_9STRA1.120e-6088.03Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU4.610e-5982.76Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
B7FWR8_PHATC1.410e-5882.76Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA9.550e-5884.48Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B8BX20_THAPS2.650e-5783.33Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7S2P1D6_9STRA3.100e-5682.35Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6539contigL-elsbetiae_contig6539:473..823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.2
Seed ortholog evalue1.3e-52
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.15224-CDS-L-elsbetiae_contig6539:472..8231622816722.15224-CDS-L-elsbetiae_contig6539:472..823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6539 473..823 -
1691683765.1727488-CDS-L-elsbetiae_contig6539:472..8231691683765.1727488-CDS-L-elsbetiae_contig6539:472..823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6539 473..823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6539.15239.1prot_L-elsbetiae_contig6539.15239.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6539 473..823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6539.15239.1

>prot_L-elsbetiae_contig6539.15239.1 ID=prot_L-elsbetiae_contig6539.15239.1|Name=mRNA_L-elsbetiae_contig6539.15239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at L-elsbetiae_contig6539:473..823-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6539.15239.1 ID=mRNA_L-elsbetiae_contig6539.15239.1|Name=mRNA_L-elsbetiae_contig6539.15239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=351bp|location=Sequence derived from alignment at L-elsbetiae_contig6539:473..823- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAAGACACCCTCCAAGAAGTCCGCCAAGGCCCCCAAGAAGGCCGG
CGACAAGAAGAGGAAGAGCAAGAGGACCGAGTCGTACTCGACCTACATCT
ACCGCGTGCTCAAGCAGGTGCACCCCGACACCGGTATCTCCAAGCGAGGG
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTGGCCGG
CGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTCTCCTCGC
GCGAGGTCCAGACCGCCGTGCGCCTCATGCTCCCCGGAGAGCTTGCCAAG
CACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCGTCCTA
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6539:473..823-

>mRNA_L-elsbetiae_contig6539.15239.1 ID=mRNA_L-elsbetiae_contig6539.15239.1|Name=mRNA_L-elsbetiae_contig6539.15239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig6539:473..823- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAAGACACCCTCCAAGAAGTCCGCCAAGGCCCCCAAGAAGGCCGG
CGACAAGAAGAGGAAGAGCAAGAGGACCGAGTCGTACTCGACCTACATCT
ACCGCGTGCTCAAGCAGGTGCACCCCGACACCGGTATCTCCAAGCGAGGG
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTGGCCGG
CGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTCTCCTCGC
GCGAGGTCCAGACCGCCGTGCGCCTCATGCTCCCCGGAGAGCTTGCCAAG
CACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCGTCCTA
AATGGCCAAGACACCCTCCAAGAAGTCCGCCAAGGCCCCCAAGAAGGCCG
GCGACAAGAAGAGGAAGAGCAAGAGGACCGAGTCGTACTCGACCTACATC
TACCGCGTGCTCAAGCAGGTGCACCCCGACACCGGTATCTCCAAGCGAGG
GATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTGGCCG
GCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTCTCCTCG
CGCGAGGTCCAGACCGCCGTGCGCCTCATGCTCCCCGGAGAGCTTGCCAA
GCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCGTCCT
AA
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