mRNA_L-elsbetiae_contig6532.15228.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6532.15228.1
Unique NamemRNA_L-elsbetiae_contig6532.15228.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6532.15228.1 vs. uniprot
Match: D8LBQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBQ5_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.550e-48
Identity = 77/102 (75.49%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:    1 RHWSPQFCHCSLDVTAPVFRIVGWDNMTAEASAAIVPAASSRKRGLEIAEFLDDRMRSNHEREGKKTGAGRSTHESYTKEMLGAVHEAYAKDYELFSEYWEQ 306
            +HWSPQ+CHCSLDVTAPVFRIVGW NMT  ASAAIVP ASS  RGLEI EFL DRM +NHER GKKT AG  + E+YT E L AVHEAYAKDYELFS+YW++
Sbjct:   22 KHWSPQYCHCSLDVTAPVFRIVGWANMTEVASAAIVPFASSPARGLEIKEFLVDRMDTNHERHGKKTSAGSRSQEAYTTEALQAVHEAYAKDYELFSQYWDE 123
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BLAST of mRNA_L-elsbetiae_contig6532.15228.1 vs. uniprot
Match: A0A6H5JKQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ4_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 1.790e-44
Identity = 76/100 (76.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:    1 RHWSPQFCHCSLDVTAPVFRIVGWDNMTAEASAAIVPAASSRKRGLEIAEFLDDRMRSNHEREGKKTGAGRSTHESYTKEMLGAVHEAYAKDYELFSEYW 300
            +HWSPQ+CHCSLDVTAPVFRIVGW NMT  ASAAIVP ASS  RGLEI EFL DRM +NHER GKKT AG  + E+YT E L AVHEAYAKDY+LFS+YW
Sbjct:  268 KHWSPQYCHCSLDVTAPVFRIVGWANMTEAASAAIVPFASSSARGLEIKEFLVDRMDTNHERHGKKTSAGSRSQEAYTAEALQAVHEAYAKDYKLFSQYW 367
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6532.15228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBQ5_ECTSI2.550e-4875.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKQ4_9PHAE1.790e-4476.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6532contigL-elsbetiae_contig6532:545..1596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionprobable Sulfotransferase pseudogene
Ec32 orthologEc-27_003110.1
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.3400483-CDS-L-elsbetiae_contig6532:544..7691622816721.3400483-CDS-L-elsbetiae_contig6532:544..769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6532 545..769 +
1691683764.675046-CDS-L-elsbetiae_contig6532:544..7691691683764.675046-CDS-L-elsbetiae_contig6532:544..769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6532 545..769 +
1622816721.3546622-CDS-L-elsbetiae_contig6532:1509..15961622816721.3546622-CDS-L-elsbetiae_contig6532:1509..1596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6532 1510..1596 +
1691683764.6893084-CDS-L-elsbetiae_contig6532:1509..15961691683764.6893084-CDS-L-elsbetiae_contig6532:1509..1596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6532 1510..1596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6532.15228.1prot_L-elsbetiae_contig6532.15228.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6532 545..1596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6532.15228.1

>prot_L-elsbetiae_contig6532.15228.1 ID=prot_L-elsbetiae_contig6532.15228.1|Name=mRNA_L-elsbetiae_contig6532.15228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
RHWSPQFCHCSLDVTAPVFRIVGWDNMTAEASAAIVPAASSRKRGLEIAE
FLDDRMRSNHEREGKKTGAGRSTHESYTKEMLGAVHEAYAKDYELFSEYW
EQA*
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mRNA from alignment at L-elsbetiae_contig6532:545..1596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6532.15228.1 ID=mRNA_L-elsbetiae_contig6532.15228.1|Name=mRNA_L-elsbetiae_contig6532.15228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1052bp|location=Sequence derived from alignment at L-elsbetiae_contig6532:545..1596+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCACTGGTCCCCGCAGTTCTGCCACTGCTCGCTCGACGTGACGGCCCC
GGTGTTCCGCATCGTGGGGTGGGACAACATGACGGCGGAGGCCTCGGCGG
CCATCGTTCCGGCGGCCTCCTCTCGGAAGCGCGGCCTTGAGATCGCCGAG
TTCCTTGACGACAGGATGAGGAGCAACCACGAGCGGGAAGGGAAGAAGAC
CGGCGCGGGACGCTCCACTCACGAGGTGGGTGGTTGGGTGGGTGGGTGGG
TTTGCGGGGCCCCTGGAGATGCTCTTATAGCGCGTTTCCATATGTACACT
GGAGGTTCCGTCTTTTCTTCGCGCGAAGCGGTTGAGACGAAGGCAGGGAG
AGAAGACAGGCTCGACCGGGAATTTCCTCTGCCCATGACATGAGGCACTG
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGTTTTCGTTCTTC
TCATGACTGGCTTATTCGTCGTCTGCCCCACTGGCCCCCTTCCTCCACGA
CGACTAGCTGTGTGTGTGGGTGTGTGTAAATGTGTGCTTGTCACCCACCA
ACACGACTCCAAACGATTCACCTTACATGATCCAGAGAAAGTGGGGTGTA
TGTATTGTATGTAATTGTGTATGTAATTGTTGCTTTGAGGTGACCCGCAC
GGGAAGGTTACCCTTGTGTATGAATTACCTGTGAGGGACGTTTTTAAAAA
TTGTACGATTTGTTGAGATACCTGAGGTGTTTTTTTCTAGACCCATCCGT
TCTGACCGCTAGCGCCGACAGATACCTCTCGCGCGCGCTTCGTCCGCTTC
CTCTACCCCCCTGCCCCCCCTCTCTCTCTTTTCTCGTCTCTTTGTCCTCC
TCACCCCCTCCTCCTCACGAATACGCGCGTGTCTCTGTCTATTATGATCC
GTCATATGTGTGTGGGCGTACATAAATGTACTCACATGGCGTGGCATCAC
GGCGGCAATCACCAGTCCTACACGAAGGAAATGCTCGGAGCGGTTCACGA
GGCCTACGCCAAAGACTACGAGCTTTTCTCCGAGTATTGGGAGCAAGCTT
AA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6532:545..1596+

>mRNA_L-elsbetiae_contig6532.15228.1 ID=mRNA_L-elsbetiae_contig6532.15228.1|Name=mRNA_L-elsbetiae_contig6532.15228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig6532:545..1596+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCACTGGTCCCCGCAGTTCTGCCACTGCTCGCTCGACGTGACGGCCCC
GGTGTTCCGCATCGTGGGGTGGGACAACATGACGGCGGAGGCCTCGGCGG
CCATCGTTCCGGCGGCCTCCTCTCGGAAGCGCGGCCTTGAGATCGCCGAG
TTCCTTGACGACAGGATGAGGAGCAACCACGAGCGGGAAGGGAAGAAGAC
CGGCGCGGGACGCTCCACTCACGAGAGGCACTGGTCCCCGCAGTTCTGCC
ACTGCTCGCTCGACGTGACGGCCCCGGTGTTCCGCATCGTGGGGTGGGAC
AACATGACGGCGGAGGCCTCGGCGGCCATCGTTCCGGCGGCCTCCTCTCG
GAAGCGCGGCCTTGAGATCGCCGAGTTCCTTGACGACAGGATGAGGAGCA
ACCACGAGCGGGAAGGGAAGAAGACCGGCGCGGGACGCTCCACTCACGAG
TCCTACACGAAGGAAATGCTCGGAGCGGTTCACGAGGCCTACGCCAAAGA
CTACGAGCTTTTCTCCGAGTATTGGGAGCAAGCTTAATCCTACACGAAGG
AAATGCTCGGAGCGGTTCACGAGGCCTACGCCAAAGACTACGAGCTTTTC
TCCGAGTATTGGGAGCAAGCTTAA
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