mRNA_L-elsbetiae_contig6527.15222.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6527.15222.1
Unique NamemRNA_L-elsbetiae_contig6527.15222.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6527.15222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6527contigL-elsbetiae_contig6527:4059..6078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin ligase, Det1/DDB1-complexing
Ec32 orthologEc-09_002890.1
Exons4
Model size786
Cds size786
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6527.15222.1prot_L-elsbetiae_contig6527.15222.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6527 4059..6078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.7353528-CDS-L-elsbetiae_contig6527:4058..41511622816720.7353528-CDS-L-elsbetiae_contig6527:4058..4151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6527 4059..4151 +
1691683764.3183029-CDS-L-elsbetiae_contig6527:4058..41511691683764.3183029-CDS-L-elsbetiae_contig6527:4058..4151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6527 4059..4151 +
1622816720.748343-CDS-L-elsbetiae_contig6527:4628..46891622816720.748343-CDS-L-elsbetiae_contig6527:4628..4689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6527 4629..4689 +
1691683764.3275123-CDS-L-elsbetiae_contig6527:4628..46891691683764.3275123-CDS-L-elsbetiae_contig6527:4628..4689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6527 4629..4689 +
1622816720.758966-CDS-L-elsbetiae_contig6527:5220..53001622816720.758966-CDS-L-elsbetiae_contig6527:5220..5300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6527 5221..5300 +
1691683764.3381734-CDS-L-elsbetiae_contig6527:5220..53001691683764.3381734-CDS-L-elsbetiae_contig6527:5220..5300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6527 5221..5300 +
1622816720.770818-CDS-L-elsbetiae_contig6527:5526..60781622816720.770818-CDS-L-elsbetiae_contig6527:5526..6078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6527 5527..6078 +
1691683764.3484004-CDS-L-elsbetiae_contig6527:5526..60781691683764.3484004-CDS-L-elsbetiae_contig6527:5526..6078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6527 5527..6078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6527.15222.1

>prot_L-elsbetiae_contig6527.15222.1 ID=prot_L-elsbetiae_contig6527.15222.1|Name=mRNA_L-elsbetiae_contig6527.15222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=262bp
MAFLSDMPSRNAANFSLMLSGDARAGGSYHQPAAGITNYIALNDTRPPEG
QVIGMCQGHSVLGYNWHQHVSSCPTADKQRGLKRPVSSVGGGGSVPSASS
STASASKPAPPGVDIPQLRNTEMSVQGCGSGGIRSAASGSRDAAESSCDD
DNDAMQASDAAASSLSKSKATNAAAGRSSRGLAVASQGEESVHRGRSFGA
RGFLGGNRTGNKGGACSTAAGRDRREVPISGEGETPEGAAVAAATTRGRV
GMRKARRTYGR*
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mRNA from alignment at L-elsbetiae_contig6527:4059..6078+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6527.15222.1 ID=mRNA_L-elsbetiae_contig6527.15222.1|Name=mRNA_L-elsbetiae_contig6527.15222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2020bp|location=Sequence derived from alignment at L-elsbetiae_contig6527:4059..6078+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTTTCTATCCGACATGCCGAGCCGGAACGCCGCCAACTTCTCGTT
GATGCTCTCCGGGGACGCAAGAGCAGGAGGATCATATCACCAGGTAAATA
TTTTATTCTGTTGTGTGTTCTTCTGGTCTCTTTGGGCAAATTCTCGGGCC
GAACGGTCTGTTCGTTCTAACTGATGTTCGTACGTGGTATCTACTATCTA
CGCTGGCACCTTTACAACGAAGAGCGAGCCCTCGATGTTGAATGTTGAAG
AACCCAGCAAACGAACTGCGGCGAGAAATCGCTTGCACAAGGTTCTTGCA
GAAACGAACATGACACTATTTACAACACTTCACGGCACACCCAGGGGGCA
GGCTCAATAAAACGAAGTAATCAACAACACACCATATTGATTGTGTGGGC
CAGCGGGATAGATCGTTCCCAAAATTTAGACCTACCCATCTCTACCCTGG
GTGATGCAAACACGCCCGAAGCTGTCCCGCTTGCAAATTAATACCGTCTG
TTTTAATTTAAAGTCCAGCGTATTCGTTGTCTTTGTTAATCCCCTCTTTG
CCTGCTTGCGCGCGCAGCAGCCAGCGGCGGGCATTACAAATTACATTGCC
TTGAACGACACAAGACCTCCCGAAGGACAAGGTGAGAGGGGCTCGCTCAA
CTTAATTTGCGCCGCTCATAATACCCTGCGGGAAGGGGACCTCAGAGCTT
CCGAGCTTGTGTCGCTGCTTGGTCCTTCGGCTTACGCTATTAAGTTCGCT
ACGACTTGCGAGTCCCGCCCGCCGACTCTCGCAGAGTGTTGATTTTTCTC
CACGGAGGTAGGCACTCAGAAGCGCTTCGGCGCATGTCAACGGGGGAGCA
GTGTTAAATTATGGTTCCGTCCCGAGCAACACCAGAATAATACCTGACCC
CGATAGATGCGAGCGGGCCTGCCCGCGGAAAGATATTGTCTGAGACACTC
ACTCCCCTTCGCAACACACGGGGCACGCTTGCTTTCCCGGTTGAGATAAA
CAAGTGCTCATCGTTGTGAGCGGTCTGCGCCCGAAGAGTAGTATTTTGGC
AGTCCTTGTTCTTGCGCGGGATTAGCACTCATGCGTTTCGCAAATGCTTT
GATCTCTTGTTCTACTAATCTCCATGCCCTACGGTGTTTTTGGAACACAC
GCATTGTCGCAGTTATTGGGATGTGTCAGGGGCACTCTGTTCTGGGCTAC
AACTGGCACCAACACGTTTCTTCTTGTCCTACGGCGGACAAGGTGAGCAT
GAAAACGTAGGCAGCAACACGAAGACGTTGCGAATAGTAGCGAGTTTAAA
TGTAAGCGTGGGTCTCGGTATCCCGCTGCTCGTTGATGATATTTATCCGA
CCACCGTACAGATGTTTATTTAGAGTAAAAGCTATCCGCTGGTAACCAGC
TCTGTGTTATGCCACTTCAATACACACAGCATACCGTTTATCAAGCCGTA
TTCTGTTTCGCTTTGTAGCAGCGAGGGCTCAAGCGGCCGGTGTCTAGTGT
TGGCGGCGGTGGTTCGGTCCCGTCAGCCTCATCATCTACGGCCTCGGCAT
CGAAGCCGGCACCACCAGGGGTGGACATTCCCCAATTGAGGAACACGGAA
ATGAGTGTACAGGGATGTGGGAGCGGCGGCATTCGCTCCGCCGCTAGCGG
TAGCAGAGATGCAGCAGAGAGCAGCTGCGACGACGATAACGACGCCATGC
AGGCCTCCGATGCTGCGGCCTCCAGCTTGAGTAAAAGCAAGGCAACGAAT
GCGGCAGCGGGTAGATCTTCTCGTGGTCTGGCAGTAGCCTCACAGGGTGA
AGAGAGTGTACATCGGGGGCGTAGCTTCGGAGCGCGGGGCTTTCTAGGCG
GGAATCGAACTGGTAACAAAGGCGGGGCCTGCTCGACGGCAGCGGGTCGA
GACCGCCGAGAGGTCCCCATTAGTGGGGAAGGAGAGACTCCAGAAGGAGC
GGCAGTGGCTGCTGCTACTACCCGAGGAAGAGTCGGCATGAGAAAGGCTC
GTAGGACATACGGGCGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6527:4059..6078+

>mRNA_L-elsbetiae_contig6527.15222.1 ID=mRNA_L-elsbetiae_contig6527.15222.1|Name=mRNA_L-elsbetiae_contig6527.15222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1572bp|location=Sequence derived from alignment at L-elsbetiae_contig6527:4059..6078+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTTTCTATCCGACATGCCGAGCCGGAACGCCGCCAACTTCTCGTT
GATGCTCTCCGGGGACGCAAGAGCAGGAGGATCATATCACCAGATGGCGT
TTCTATCCGACATGCCGAGCCGGAACGCCGCCAACTTCTCGTTGATGCTC
TCCGGGGACGCAAGAGCAGGAGGATCATATCACCAGCCAGCGGCGGGCAT
TACAAATTACATTGCCTTGAACGACACAAGACCTCCCGAAGGACAAGCCA
GCGGCGGGCATTACAAATTACATTGCCTTGAACGACACAAGACCTCCCGA
AGGACAAGTTATTGGGATGTGTCAGGGGCACTCTGTTCTGGGCTACAACT
GGCACCAACACGTTTCTTCTTGTCCTACGGCGGACAAGTTATTGGGATGT
GTCAGGGGCACTCTGTTCTGGGCTACAACTGGCACCAACACGTTTCTTCT
TGTCCTACGGCGGACAAGCAGCGAGGGCTCAAGCGGCCGGTGTCTAGTGT
TGGCGGCGGTGGTTCGGTCCCGTCAGCCTCATCATCTACGGCCTCGGCAT
CGAAGCCGGCACCACCAGGGGTGGACATTCCCCAATTGAGGAACACGGAA
ATGAGTGTACAGGGATGTGGGAGCGGCGGCATTCGCTCCGCCGCTAGCGG
TAGCAGAGATGCAGCAGAGAGCAGCTGCGACGACGATAACGACGCCATGC
AGGCCTCCGATGCTGCGGCCTCCAGCTTGAGTAAAAGCAAGGCAACGAAT
GCGGCAGCGGGTAGATCTTCTCGTGGTCTGGCAGTAGCCTCACAGGGTGA
AGAGAGTGTACATCGGGGGCGTAGCTTCGGAGCGCGGGGCTTTCTAGGCG
GGAATCGAACTGGTAACAAAGGCGGGGCCTGCTCGACGGCAGCGGGTCGA
GACCGCCGAGAGGTCCCCATTAGTGGGGAAGGAGAGACTCCAGAAGGAGC
GGCAGTGGCTGCTGCTACTACCCGAGGAAGAGTCGGCATGAGAAAGGCTC
GTAGGACATACGGGCGGTAACAGCGAGGGCTCAAGCGGCCGGTGTCTAGT
GTTGGCGGCGGTGGTTCGGTCCCGTCAGCCTCATCATCTACGGCCTCGGC
ATCGAAGCCGGCACCACCAGGGGTGGACATTCCCCAATTGAGGAACACGG
AAATGAGTGTACAGGGATGTGGGAGCGGCGGCATTCGCTCCGCCGCTAGC
GGTAGCAGAGATGCAGCAGAGAGCAGCTGCGACGACGATAACGACGCCAT
GCAGGCCTCCGATGCTGCGGCCTCCAGCTTGAGTAAAAGCAAGGCAACGA
ATGCGGCAGCGGGTAGATCTTCTCGTGGTCTGGCAGTAGCCTCACAGGGT
GAAGAGAGTGTACATCGGGGGCGTAGCTTCGGAGCGCGGGGCTTTCTAGG
CGGGAATCGAACTGGTAACAAAGGCGGGGCCTGCTCGACGGCAGCGGGTC
GAGACCGCCGAGAGGTCCCCATTAGTGGGGAAGGAGAGACTCCAGAAGGA
GCGGCAGTGGCTGCTGCTACTACCCGAGGAAGAGTCGGCATGAGAAAGGC
TCGTAGGACATACGGGCGGTAA
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