mRNA_L-elsbetiae_contig6525.15220.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6525.15220.1
Unique NamemRNA_L-elsbetiae_contig6525.15220.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6525.15220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6525contigL-elsbetiae_contig6525:5624..6070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.528405-CDS-L-elsbetiae_contig6525:5623..57691622816720.528405-CDS-L-elsbetiae_contig6525:5623..5769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6525 5624..5769 +
1691683764.1911407-CDS-L-elsbetiae_contig6525:5623..57691691683764.1911407-CDS-L-elsbetiae_contig6525:5623..5769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6525 5624..5769 +
1622816720.5409005-CDS-L-elsbetiae_contig6525:5983..60681622816720.5409005-CDS-L-elsbetiae_contig6525:5983..6068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6525 5984..6068 +
1691683764.2019424-CDS-L-elsbetiae_contig6525:5983..60681691683764.2019424-CDS-L-elsbetiae_contig6525:5983..6068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6525 5984..6068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6525.15220.1prot_L-elsbetiae_contig6525.15220.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6525 5624..6068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6525.15220.1

>prot_L-elsbetiae_contig6525.15220.1 ID=prot_L-elsbetiae_contig6525.15220.1|Name=mRNA_L-elsbetiae_contig6525.15220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
LGYSVENSGAAVAAFTADAMSWLAQEARALAGTWEDTDIGIRRLDITQRH
RHHLDGRGRESGGGQGTYRWSLRRRDR
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mRNA from alignment at L-elsbetiae_contig6525:5624..6070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6525.15220.1 ID=mRNA_L-elsbetiae_contig6525.15220.1|Name=mRNA_L-elsbetiae_contig6525.15220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=447bp|location=Sequence derived from alignment at L-elsbetiae_contig6525:5624..6070+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGGGTACTCCGTAGAAAACTCGGGCGCGGCAGTAGCGGCTTTTACGGC
GGATGCGATGAGCTGGTTGGCACAAGAGGCGAGGGCCTTGGCAGGCACAT
GGGAGGACACGGACATCGGTATACGGCGCCTGGATATTACACAGAGGTAC
GCTCAACGAATCGATACATAGGGGTAGCACTCGAGCAAGGGCCGAGGCAG
AGGAAGATGGTGCACCGCCTCTTTCTGTTTTTTGGTGCTTTGGTCTTGTG
GCTGTCGAACACTCCAAGGTAGTAGGTAAGAACTAGGAATAAGTCTACCA
ATGGCGAATACTGTAGATAGATGTACAGCATGACCAACATTCTTGTGTCG
ATGGCCGCAGGCACCGGCACCACCTCGACGGGCGGGGCCGTGAGTCTGGC
GGCGGGCAAGGGACGTACCGGTGGAGCCTTCGCCGTCGTGACCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6525:5624..6070+

>mRNA_L-elsbetiae_contig6525.15220.1 ID=mRNA_L-elsbetiae_contig6525.15220.1|Name=mRNA_L-elsbetiae_contig6525.15220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig6525:5624..6070+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGGGTACTCCGTAGAAAACTCGGGCGCGGCAGTAGCGGCTTTTACGGC
GGATGCGATGAGCTGGTTGGCACAAGAGGCGAGGGCCTTGGCAGGCACAT
GGGAGGACACGGACATCGGTATACGGCGCCTGGATATTACACAGAGCTGG
GGTACTCCGTAGAAAACTCGGGCGCGGCAGTAGCGGCTTTTACGGCGGAT
GCGATGAGCTGGTTGGCACAAGAGGCGAGGGCCTTGGCAGGCACATGGGA
GGACACGGACATCGGTATACGGCGCCTGGATATTACACAGAGGCACCGGC
ACCACCTCGACGGGCGGGGCCGTGAGTCTGGCGGCGGGCAAGGGACGTAC
CGGTGGAGCCTTCGCCGTCGTGACCGGGCACCGGCACCACCTCGACGGGC
GGGGCCGTGAGTCTGGCGGCGGGCAAGGGACGTACCGGTGGAGCCTTCGC
CGTCGTGACCGG
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