mRNA_L-elsbetiae_contig6524.15218.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6524.15218.1
Unique NamemRNA_L-elsbetiae_contig6524.15218.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6524.15218.1 vs. uniprot
Match: D7FHX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX6_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 8.980e-45
Identity = 80/144 (55.56%), Postives = 99/144 (68.75%), Query Frame = 1 
Query:   10 MVAGEGATPPLPPRGDD-EQQARPPNIMLKTPPKREDIPSLQSTVLLMKHEFSSRQRQYLASDK----LYQAITKKCGQFGDKPRKLGMCCSRELCPKEYTEFIACIRATRDPSMCHEFRDEVERCGARASQRLLRVALADDWF 426
            M   +G   P PP GD+ +Q  R P + L TPP +EDIP L ST+ L +H+FS R+R  L        LY+ +  KCGQF DKPR+  +C SR+LCPKE ++ +ACIR TRD SMCHEFRDEVERCG + SQRLLR AL+DDWF
Sbjct:    1 MTDADGTEKPPPPAGDENDQPKRLPKVTLNTPPTQEDIPQLLSTLKLFRHQFSPRERHCLGKHPVLGPLYEGVQGKCGQFIDKPRRFAVCSSRQLCPKEQSQLLACIRTTRDASMCHEFRDEVERCGVKMSQRLLRAALSDDWF 144
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6524.15218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHX6_ECTSI8.980e-4555.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6524contigL-elsbetiae_contig6524:750..3294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006260.1
Exons3
Model size1639
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6524.15218.1prot_L-elsbetiae_contig6524.15218.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6524 759..2084 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.436226-UTR-L-elsbetiae_contig6524:749..7581622816720.436226-UTR-L-elsbetiae_contig6524:749..758Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6524 750..758 +
1691683764.0970135-UTR-L-elsbetiae_contig6524:749..7581691683764.0970135-UTR-L-elsbetiae_contig6524:749..758Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6524 750..758 +
1622816720.4906573-UTR-L-elsbetiae_contig6524:2084..32941622816720.4906573-UTR-L-elsbetiae_contig6524:2084..3294Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6524 2085..3294 +
1691683764.1812377-UTR-L-elsbetiae_contig6524:2084..32941691683764.1812377-UTR-L-elsbetiae_contig6524:2084..3294Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6524 2085..3294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.449923-CDS-L-elsbetiae_contig6524:758..9651622816720.449923-CDS-L-elsbetiae_contig6524:758..965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6524 759..965 +
1691683764.114411-CDS-L-elsbetiae_contig6524:758..9651691683764.114411-CDS-L-elsbetiae_contig6524:758..965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6524 759..965 +
1622816720.4666398-CDS-L-elsbetiae_contig6524:1218..13021622816720.4666398-CDS-L-elsbetiae_contig6524:1218..1302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6524 1219..1302 +
1691683764.1482644-CDS-L-elsbetiae_contig6524:1218..13021691683764.1482644-CDS-L-elsbetiae_contig6524:1218..1302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6524 1219..1302 +
1622816720.4797993-CDS-L-elsbetiae_contig6524:1955..20841622816720.4797993-CDS-L-elsbetiae_contig6524:1955..2084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6524 1956..2084 +
1691683764.1709797-CDS-L-elsbetiae_contig6524:1955..20841691683764.1709797-CDS-L-elsbetiae_contig6524:1955..2084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6524 1956..2084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6524.15218.1

>prot_L-elsbetiae_contig6524.15218.1 ID=prot_L-elsbetiae_contig6524.15218.1|Name=mRNA_L-elsbetiae_contig6524.15218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MVAGEGATPPLPPRGDDEQQARPPNIMLKTPPKREDIPSLQSTVLLMKHE
FSSRQRQYLASDKLYQAITKKCGQFGDKPRKLGMCCSRELCPKEYTEFIA
CIRATRDPSMCHEFRDEVERCGARASQRLLRVALADDWF*
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mRNA from alignment at L-elsbetiae_contig6524:750..3294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6524.15218.1 ID=mRNA_L-elsbetiae_contig6524.15218.1|Name=mRNA_L-elsbetiae_contig6524.15218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2545bp|location=Sequence derived from alignment at L-elsbetiae_contig6524:750..3294+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTTTGCGATGGTCGCGGGTGAGGGTGCAACCCCTCCGTTACCACCACG
TGGAGATGACGAGCAACAGGCGAGACCGCCGAATATTATGTTGAAAACAC
CACCGAAGCGAGAGGACATCCCCTCGCTCCAATCCACCGTTTTGTTGATG
AAGCACGAGTTCTCCTCTCGACAGCGACAATACCTCGCCAGCGACAAACT
TTATCAGGCGATCACGGTGAGGGCTGAGAAAGAGCTAAGAAAAGCCCAGC
TAATCTACTCGATTTACAGTGTACGCGGATGTATTTCGGGAGCCTAGACT
CCATAGATAATATACTAGATATGCATAACGACCCATTTTCTTGAACACGA
CAACGACCCATGTATGTACCCGTCCTCACCTCTGCCCCCCCCCTGCTCTC
GACGCCGCGCGCACCACCTCCGCTCGTCCTCAACGTGTGGGTTTCCCTTT
TGCCGCTTGTCTGAAGCAGAAAAAATGTGGTCAGTTCGGAGATAAACCGA
GAAAGCTCGGCATGTGCTGCTCGCGGGAGCTGTGTCCGAAGGAGTACACT
GAGGTACGCCGACGAAGGAAACAGACGAAGAAGTGAGGGGGTGCGGGAAC
CCCAGCGGCCAGCACTGGCGAGAGAGTTGGGACCATATATGTACATATAT
ACAGGTCATACTTAGGACGCCGAGAGACACGCATGCTGCCCTTTGCTACA
CCACGATATTCCTGTTTACGGGATCACGTTGCGATCACACATTACGTACA
TGGAGTAGTAGCTACTACTGTAGATTCTAGTAGTCTGGTAGATTCCATGC
ACACCGGCGGATACGTCATGCTTGTACAAAGAAGCAGCCCCGCAACGTGC
ATGTTGTACACACATCGAAACGTGTGGCAGGCACCCGGATAAATGGGACG
AAAACACACACACACACGGCAAGAAAAAGAATACGGTCTGGTCTGGATTA
CTTATTACCACTGTAGCCGGGGCCGTGAGGGCGAGTGTGCGTCAGCTGCA
TAGTTTCCCCTGGAAAATACAGCCGAATTCCGATGTGTAATTGTTCCACC
TCCTTCGCTCCAGCTTGTGAAAATAATCATTGCGGCAAGGAGTCCGTGCT
TACATGCTGTCGGTCATTGTTTGACAGCCCTCGTTCTTTCTCTCTCTCTC
TCTCGGTGTATCTTTCTATTCCCTCCTTCCCTTCACTTGGCGGGCGAAAA
ACAAAGTTTATCGCCTGTATTCGCGCCACGAGGGACCCGAGCATGTGCCA
CGAGTTCAGGGACGAAGTGGAGAGGTGCGGAGCGAGAGCGTCTCAGCGTC
TGCTCCGAGTAGCCCTAGCCGACGACTGGTTCTGAACCCCACTCCTATGT
GGCGCGGGAGGAAGGAAAAGAAGGAACGGGGCCGTGGTCACCATTTAACG
CTATTCCGCGAGCTATATACGCCGGGTGGCACATTCTTGTTGATGCCGTT
GATGACGTTATTCTGGGCATTTTTTTGGGTATGTACCAGCTGCGCGAGAA
TACCTGGCCTGTTGCGCACTACTGAGTTTCGTTTTGCATGCACCTGATGT
TGGGTAAGAAAGAGGCGGAGCGCACCGTGTTTTTTTTTCTAGACGTCTTG
ACGGTGTGTCACACAGAAGAATCCGCGCCGCGTGTCGTGTAAATCCGTTG
TTGGTCGCAAGAACGGCAACTAACTCTACGTTGGTGGGACACACATGCGG
TTTTGTGGTTGATGCCCTCCCACCCATCGCCCCCGCTCACTTGCAAAGAG
AGTCGTTCGATCTAAAAAAGTTGTGGATATTCGCAGCTTTCGTGAAAATG
ACCTTGGCGAATAGTATGGCTGTGGTGAGAGTATTTCCACCCAGCACGCA
GCAACAGCTTTATTGATCGGCTATGATGTAGAAGCCACTACTTCACAGCG
GCCTGAAAGGAGTTCTGCGGCTGGTGGCGCTCCGTGTTGATTGCAGGGGG
GGGCGAGACTGTTGGAATAATGGACAGCAGTAGTCACCAGCTCCCAGCAT
GAGCGTGTCAGCTGAAACGATGGGGTCCTCGTCGTTGGTTCACTATCGCA
GTAGATGTAATCGGTCTCGCTCTGCAGGACCCGAGAAGTGGTGACATGAC
ACTATCCCAACCACGGGTTGAGATCAATCAACGTGACGGGGGCCGTGAAA
AATGTTTTCGCTGCATTCAGCATCCAGTCAGTCTTGTACGTTTGTCCTGC
GACTGGTACATAGTGTTCGCGCAACGCCGCGATGATGTTGCTCCAGCGGG
TTCTGATTTACCAAGGGACATAACATCGCTGGTGATGGTCCAGAGAAAGT
GAAGTCCCCGCTGTCTCTCAGCTACTGGAAGTACACTACAAACAGTTGGA
ATCCGTTGAAGGTCTTCCGGTACGAAGGGAGCGCAGCAGCCGCGAGCGGG
AGTGTTGCTTTCGTAGAAGATACTTAAACAAGGATTGGCGGGATCTTGTG
GTGGGAACAGCGAAACGAAGCATCGCTAGCGGTGCCACCGAAATAGTTAC
CCTTTGGTGTGAGACACCCTCGTCGAGCACAGGGGAGAGGCCGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6524:750..3294+

>mRNA_L-elsbetiae_contig6524.15218.1 ID=mRNA_L-elsbetiae_contig6524.15218.1|Name=mRNA_L-elsbetiae_contig6524.15218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig6524:750..3294+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGCGGGTGAGGGTGCAACCCCTCCGTTACCACCACGTGGAGATGA
CGAGCAACAGGCGAGACCGCCGAATATTATGTTGAAAACACCACCGAAGC
GAGAGGACATCCCCTCGCTCCAATCCACCGTTTTGTTGATGAAGCACGAG
TTCTCCTCTCGACAGCGACAATACCTCGCCAGCGACAAACTTTATCAGGC
GATCACGATGGTCGCGGGTGAGGGTGCAACCCCTCCGTTACCACCACGTG
GAGATGACGAGCAACAGGCGAGACCGCCGAATATTATGTTGAAAACACCA
CCGAAGCGAGAGGACATCCCCTCGCTCCAATCCACCGTTTTGTTGATGAA
GCACGAGTTCTCCTCTCGACAGCGACAATACCTCGCCAGCGACAAACTTT
ATCAGGCGATCACGAAAAAATGTGGTCAGTTCGGAGATAAACCGAGAAAG
CTCGGCATGTGCTGCTCGCGGGAGCTGTGTCCGAAGGAGTACACTGAGAA
AAAATGTGGTCAGTTCGGAGATAAACCGAGAAAGCTCGGCATGTGCTGCT
CGCGGGAGCTGTGTCCGAAGGAGTACACTGAGTTTATCGCCTGTATTCGC
GCCACGAGGGACCCGAGCATGTGCCACGAGTTCAGGGACGAAGTGGAGAG
GTGCGGAGCGAGAGCGTCTCAGCGTCTGCTCCGAGTAGCCCTAGCCGACG
ACTGGTTCTGATTTATCGCCTGTATTCGCGCCACGAGGGACCCGAGCATG
TGCCACGAGTTCAGGGACGAAGTGGAGAGGTGCGGAGCGAGAGCGTCTCA
GCGTCTGCTCCGAGTAGCCCTAGCCGACGACTGGTTCTGA
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