mRNA_L-elsbetiae_contig6522.15215.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6522.15215.1
Unique NamemRNA_L-elsbetiae_contig6522.15215.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6522.15215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6522contigL-elsbetiae_contig6522:5007..5584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.0949132-CDS-L-elsbetiae_contig6522:5006..52711622816720.0949132-CDS-L-elsbetiae_contig6522:5006..5271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 5007..5271 +
1691683763.909752-CDS-L-elsbetiae_contig6522:5006..52711691683763.909752-CDS-L-elsbetiae_contig6522:5006..5271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 5007..5271 +
1622816720.1072788-CDS-L-elsbetiae_contig6522:5531..55841622816720.1072788-CDS-L-elsbetiae_contig6522:5531..5584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 5532..5584 +
1691683763.921312-CDS-L-elsbetiae_contig6522:5531..55841691683763.921312-CDS-L-elsbetiae_contig6522:5531..5584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 5532..5584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6522.15215.1prot_L-elsbetiae_contig6522.15215.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6522 5007..5584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6522.15215.1

>prot_L-elsbetiae_contig6522.15215.1 ID=prot_L-elsbetiae_contig6522.15215.1|Name=mRNA_L-elsbetiae_contig6522.15215.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
RQVSLRPLQTGRSNSSNDQPSSWAKVKASPEKTTKRTTLAVVSEYLQRAR
SLPHPSVPRSTSRTGDGGRRRAWKLSGSVQQRPTRYLRSFRTKALGGRKA
WSGGLP
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mRNA from alignment at L-elsbetiae_contig6522:5007..5584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6522.15215.1 ID=mRNA_L-elsbetiae_contig6522.15215.1|Name=mRNA_L-elsbetiae_contig6522.15215.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=578bp|location=Sequence derived from alignment at L-elsbetiae_contig6522:5007..5584+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCAGGTAAGCCTTCGGCCCCTGCAGACAGGAAGAAGCAACAGCAGCAA
CGACCAGCCGTCGAGTTGGGCGAAAGTGAAAGCTTCGCCCGAAAAAACAA
CCAAAAGAACAACACTTGCCGTCGTTTCCGAGTACCTGCAACGGGCTCGG
AGCCTCCCGCACCCTTCGGTTCCGAGGAGTACCTCAAGAACAGGAGACGG
AGGGCGGCGCAGGGCGTGGAAGTTGTCCGGCAGTGTGCAGCAGAGACCGA
CAAGATATCTTCGCTGTGAGTAGGTTGTGCGTGCAGGGCGTGCGCATGGG
GCAACCCAGGGGACCGAAATGCGGTTCGTTTCCAGAATATTGGCATGGTG
GGGCGGGCTAACGAAAACGCGGATGGTGCCTTATTCGTATCTTGGGCAGG
GCCAAACCCGCCGTGTCTGATGCCTGGATGTTAGAAAAGAGACCGGCCGG
TTGAAAGTGCAGATTTTGATACCAACAACACCGCTGGCTTCTGCCCAATC
TACCTCGTGCGATAAATGTTGGCAGCATTTCGGACGAAGGCGCTAGGAGG
GCGCAAAGCCTGGTCCGGCGGCTTGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6522:5007..5584+

>mRNA_L-elsbetiae_contig6522.15215.1 ID=mRNA_L-elsbetiae_contig6522.15215.1|Name=mRNA_L-elsbetiae_contig6522.15215.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig6522:5007..5584+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCAGGTAAGCCTTCGGCCCCTGCAGACAGGAAGAAGCAACAGCAGCAA
CGACCAGCCGTCGAGTTGGGCGAAAGTGAAAGCTTCGCCCGAAAAAACAA
CCAAAAGAACAACACTTGCCGTCGTTTCCGAGTACCTGCAACGGGCTCGG
AGCCTCCCGCACCCTTCGGTTCCGAGGAGTACCTCAAGAACAGGAGACGG
AGGGCGGCGCAGGGCGTGGAAGTTGTCCGGCAGTGTGCAGCAGAGACCGA
CAAGATATCTTCGCTCGGCAGGTAAGCCTTCGGCCCCTGCAGACAGGAAG
AAGCAACAGCAGCAACGACCAGCCGTCGAGTTGGGCGAAAGTGAAAGCTT
CGCCCGAAAAAACAACCAAAAGAACAACACTTGCCGTCGTTTCCGAGTAC
CTGCAACGGGCTCGGAGCCTCCCGCACCCTTCGGTTCCGAGGAGTACCTC
AAGAACAGGAGACGGAGGGCGGCGCAGGGCGTGGAAGTTGTCCGGCAGTG
TGCAGCAGAGACCGACAAGATATCTTCGCTCATTTCGGACGAAGGCGCTA
GGAGGGCGCAAAGCCTGGTCCGGCGGCTTGCCGCATTTCGGACGAAGGCG
CTAGGAGGGCGCAAAGCCTGGTCCGGCGGCTTGCCG
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