mRNA_L-elsbetiae_contig6515.15208.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6515.15208.1
Unique NamemRNA_L-elsbetiae_contig6515.15208.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6515.15208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6515contigL-elsbetiae_contig6515:1747..2680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.5880466-CDS-L-elsbetiae_contig6515:1746..19841622816719.5880466-CDS-L-elsbetiae_contig6515:1746..1984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6515 1747..1984 +
1691683763.5363648-CDS-L-elsbetiae_contig6515:1746..19841691683763.5363648-CDS-L-elsbetiae_contig6515:1746..1984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6515 1747..1984 +
1622816719.5986524-CDS-L-elsbetiae_contig6515:2624..26801622816719.5986524-CDS-L-elsbetiae_contig6515:2624..2680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6515 2625..2680 +
1691683763.5478833-CDS-L-elsbetiae_contig6515:2624..26801691683763.5478833-CDS-L-elsbetiae_contig6515:2624..2680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6515 2625..2680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6515.15208.1prot_L-elsbetiae_contig6515.15208.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6515 1747..2680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6515.15208.1

>prot_L-elsbetiae_contig6515.15208.1 ID=prot_L-elsbetiae_contig6515.15208.1|Name=mRNA_L-elsbetiae_contig6515.15208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MQGSRVPEPSAADTSSGGSRKANKRSAESADLHPVRVKSEMIDNMVSDDD
SSTACPEADAVVKTENIGLPCKVEPTEAAGRASVARTKRRKAAGGHA*
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mRNA from alignment at L-elsbetiae_contig6515:1747..2680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6515.15208.1 ID=mRNA_L-elsbetiae_contig6515.15208.1|Name=mRNA_L-elsbetiae_contig6515.15208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=934bp|location=Sequence derived from alignment at L-elsbetiae_contig6515:1747..2680+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGGCAGCCGCGTTCCTGAGCCGTCCGCCGCAGACACCTCCTCCGG
CGGGAGCAGGAAGGCTAACAAGCGTTCTGCTGAAAGCGCGGACTTGCACC
CAGTTCGGGTGAAGAGCGAGATGATCGACAACATGGTGTCCGATGACGAT
AGTTCTACGGCATGTCCGGAGGCAGACGCTGTGGTGAAGACGGAGAACAT
CGGTCTGCCTTGCAAGGTGGAGCCGACAGAAGCTGCAGGTGCATTGAAAC
AAAGGCTGTTGATGTCTCGTAGTGCTGCCGAGCTTCCATGTTGGAGTAGG
AGAGAGACGATGGTTGAATGCACACTCCGCTTCAGTAGCACCACGCACAA
CAACTGAAGAGGCCCGTAGACACCGCCGCTGCAAAGATGCACGGCGATGA
GGTTCAGTAACGGCGGCAAGACCGGCTTGGCAGTGTTACTCACCTCGGTT
TGCCGCTTGCTATGCTTCTTGAGCGCTAGAGAGCCACGTGCTATGTACAA
TATCCTGTGATCGTATGGTACAGAGGGGGCGTGTTTCACTCGCTTCGTGT
CTCGCTTTTCTGGAACCTCTTCCGTTTGTAAATTAAGCGGCCCAGCTTGA
GCTGCGACGGTCAGTCTGTTTTTGTCCCCCGCTGGGGTGGATCTCTCTTT
GTTACCTCACCTGCCGCGGAAAGCACTTTTGCTGGTTCGAGATGTTTGCT
TTCTAAAGCACAGAGACCTTGGGGTTTGTCACCTCATCTACCGCATCACC
AATCCACATGACCACCATCATGCTACCCGCTAGACTTGGTTATTGCGCCT
CAAAATATGGTGACCTCATCTGCTCGTTGGTTGTCTGGACGCGACTCTCG
TGCGCCCGCCTCCTCCCAATCAATGCAGGCCGGGCAAGCGTAGCGAGGAC
GAAGCGGAGAAAGGCCGCGGGAGGGCACGCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6515:1747..2680+

>mRNA_L-elsbetiae_contig6515.15208.1 ID=mRNA_L-elsbetiae_contig6515.15208.1|Name=mRNA_L-elsbetiae_contig6515.15208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig6515:1747..2680+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGGCAGCCGCGTTCCTGAGCCGTCCGCCGCAGACACCTCCTCCGG
CGGGAGCAGGAAGGCTAACAAGCGTTCTGCTGAAAGCGCGGACTTGCACC
CAGTTCGGGTGAAGAGCGAGATGATCGACAACATGGTGTCCGATGACGAT
AGTTCTACGGCATGTCCGGAGGCAGACGCTGTGGTGAAGACGGAGAACAT
CGGTCTGCCTTGCAAGGTGGAGCCGACAGAAGCTGCAGATGCAGGGCAGC
CGCGTTCCTGAGCCGTCCGCCGCAGACACCTCCTCCGGCGGGAGCAGGAA
GGCTAACAAGCGTTCTGCTGAAAGCGCGGACTTGCACCCAGTTCGGGTGA
AGAGCGAGATGATCGACAACATGGTGTCCGATGACGATAGTTCTACGGCA
TGTCCGGAGGCAGACGCTGTGGTGAAGACGGAGAACATCGGTCTGCCTTG
CAAGGTGGAGCCGACAGAAGCTGCAGGCCGGGCAAGCGTAGCGAGGACGA
AGCGGAGAAAGGCCGCGGGAGGGCACGCGTGAGCCGGGCAAGCGTAGCGA
GGACGAAGCGGAGAAAGGCCGCGGGAGGGCACGCGTGA
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