mRNA_L-elsbetiae_contig651.15204.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig651.15204.1
Unique NamemRNA_L-elsbetiae_contig651.15204.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig651.15204.1 vs. uniprot
Match: D8LN47_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN47_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.680e-9
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 QTAVEAISKSRKKAGEALGRMKARGKNIARSKTQRSSGNGPGSPLALSKMRNAVAQVQAKNAASTTAARDSGKPRLRILAERLLGQHR 264
            +TAV++ISKSR KAGEALG+MKARGK  ++  ++  S  GPG P ++  MRNA+A V+A   A+T       KP++  L ERL+ ++R
Sbjct:  719 KTAVKSISKSRMKAGEALGKMKARGKKFSKGNSR--STRGPG-PRSMKTMRNAIAAVKANPRAATGRETREKKPKMASLVERLMRKYR 803
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BLAST of mRNA_L-elsbetiae_contig651.15204.1 vs. uniprot
Match: A0A6H5JMZ2_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ2_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.670e-8
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    7 AVEAISKSRKKAGEALGRMKARGKNIARSKTQRSSGNGPGSPLALSKMRNAVAQVQAKNAASTTAARDSGKPRLRILAERLLGQHR 264
            AV++IS SR KAGEALG+MKARGKN ++  ++  S  GP +P ++  MRN VA V+A   A+T       KP++ IL ERL+ ++R
Sbjct:  364 AVKSISTSRMKAGEALGKMKARGKNFSKGNSR--SIRGP-APRSMKTMRNTVAAVKANPRAATGRETREKKPKMEILVERLMRKYR 446
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig651.15204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN47_ECTSI1.680e-947.73Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5JMZ2_9PHAE2.670e-847.67Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig651contigL-elsbetiae_contig651:29868..30134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog2880.D8LN47
Hectar predicted targeting categoryother localisation
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.3458574-CDS-L-elsbetiae_contig651:29867..301341622816719.3458574-CDS-L-elsbetiae_contig651:29867..30134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig651 29868..30134 +
1691683763.4066074-CDS-L-elsbetiae_contig651:29867..301341691683763.4066074-CDS-L-elsbetiae_contig651:29867..30134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig651 29868..30134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig651.15204.1prot_L-elsbetiae_contig651.15204.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig651 29868..30134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig651.15204.1

>prot_L-elsbetiae_contig651.15204.1 ID=prot_L-elsbetiae_contig651.15204.1|Name=mRNA_L-elsbetiae_contig651.15204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
QTAVEAISKSRKKAGEALGRMKARGKNIARSKTQRSSGNGPGSPLALSKM
RNAVAQVQAKNAASTTAARDSGKPRLRILAERLLGQHR*
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mRNA from alignment at L-elsbetiae_contig651:29868..30134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig651.15204.1 ID=mRNA_L-elsbetiae_contig651.15204.1|Name=mRNA_L-elsbetiae_contig651.15204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=267bp|location=Sequence derived from alignment at L-elsbetiae_contig651:29868..30134+ (Laminarionema elsbetiae ELsaHSoW15)
CAGACGGCTGTGGAGGCGATTTCCAAGTCACGGAAGAAGGCGGGTGAAGC
TCTCGGCAGGATGAAAGCGCGCGGAAAGAATATCGCCCGGAGCAAGACAC
AGCGGTCGAGTGGGAACGGACCTGGGTCACCCCTAGCGCTGAGCAAGATG
CGAAACGCAGTCGCCCAGGTGCAAGCCAAAAACGCAGCATCGACGACCGC
AGCACGAGATAGCGGCAAGCCCAGGCTGAGAATCTTGGCGGAGCGGTTGC
TGGGGCAGCACAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig651:29868..30134+

>mRNA_L-elsbetiae_contig651.15204.1 ID=mRNA_L-elsbetiae_contig651.15204.1|Name=mRNA_L-elsbetiae_contig651.15204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig651:29868..30134+ (Laminarionema elsbetiae ELsaHSoW15)
CAGACGGCTGTGGAGGCGATTTCCAAGTCACGGAAGAAGGCGGGTGAAGC
TCTCGGCAGGATGAAAGCGCGCGGAAAGAATATCGCCCGGAGCAAGACAC
AGCGGTCGAGTGGGAACGGACCTGGGTCACCCCTAGCGCTGAGCAAGATG
CGAAACGCAGTCGCCCAGGTGCAAGCCAAAAACGCAGCATCGACGACCGC
AGCACGAGATAGCGGCAAGCCCAGGCTGAGAATCTTGGCGGAGCGGTTGC
TGGGGCAGCACAGGTGACAGACGGCTGTGGAGGCGATTTCCAAGTCACGG
AAGAAGGCGGGTGAAGCTCTCGGCAGGATGAAAGCGCGCGGAAAGAATAT
CGCCCGGAGCAAGACACAGCGGTCGAGTGGGAACGGACCTGGGTCACCCC
TAGCGCTGAGCAAGATGCGAAACGCAGTCGCCCAGGTGCAAGCCAAAAAC
GCAGCATCGACGACCGCAGCACGAGATAGCGGCAAGCCCAGGCTGAGAAT
CTTGGCGGAGCGGTTGCTGGGGCAGCACAGGTGA
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