mRNA_L-elsbetiae_contig651.15201.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig651.15201.1
Unique NamemRNA_L-elsbetiae_contig651.15201.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig651.15201.1 vs. uniprot
Match: D7FU51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU51_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 2.060e-82
Identity = 139/263 (52.85%), Postives = 181/263 (68.82%), Query Frame = 1 
Query:    1 LARAGAHLLRDMLTVDRCGEPVEAMFDKAEK-VCNQTRKLRETRVAKTSGSMGDSSNMRKSRVGMVEATAEEREQMIEIYTRLVFTNGIQSVMDAIGEVDPSFVEWGMERLAAAKEVSTSFERDEIKNNDHLFGIYPKEVAEGRRRKAGVLKLGMPIKAKQSESADRKLEMACKEHDIHGHGIVRWCMVMAFAGREMLKKHNNGKLSRFFGPLQANGKQLSR-SVFGDVFRECARSFFGEANMSIASMRSVQDTLAVEYGREL 783
            L R G HLL ++L  D C E  + MF+K  K + ++TR  R +  A  +GS G+SS  RK R+G+V+ + E+RE+ +EIY RLVF +GI+ VM+AI ++D  F++WG+ERLA AK VSTSF+RD+IK  DHLFG   ++V E      GV+        KQ++ ADR+L  ACK HDI GHG+VRWCMVMA  GR MLKKHN GK+S  FGPLQANG Q+S   VFG VF+E  RSFFG  +MS+ +M S QDT+AVE G E+
Sbjct:    3 LTRNGGHLLLEILENDPCEEAAKRMFEKISKSILDKTRNERTSWDAVINGSTGESSKQRKCRIGLVDDSPEDRERNLEIYMRLVFVDGIRPVMEAIDKIDSEFIDWGVERLAEAKGVSTSFDRDDIKGIDHLFGGTREQVGE-----EGVVYSRSGCLFKQTDDADRELCNACKVHDIEGHGVVRWCMVMALVGRTMLKKHNKGKVSCMFGPLQANGAQMSPVGVFGKVFKELGRSFFGVGDMSVNAMWSTQDTIAVEQGLEI 260
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig651.15201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU51_ECTSI2.060e-8252.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig651contigL-elsbetiae_contig651:1504..2445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_000640.1
Exons2
Model size783
Cds size783
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.1290278-CDS-L-elsbetiae_contig651:1503..18511622816719.1290278-CDS-L-elsbetiae_contig651:1503..1851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig651 1504..1851 -
1691683763.255396-CDS-L-elsbetiae_contig651:1503..18511691683763.255396-CDS-L-elsbetiae_contig651:1503..1851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig651 1504..1851 -
1622816719.139903-CDS-L-elsbetiae_contig651:2010..24451622816719.139903-CDS-L-elsbetiae_contig651:2010..2445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig651 2011..2445 -
1691683763.2722256-CDS-L-elsbetiae_contig651:2010..24451691683763.2722256-CDS-L-elsbetiae_contig651:2010..2445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig651 2011..2445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig651.15201.1prot_L-elsbetiae_contig651.15201.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig651 1504..2445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig651.15201.1

>prot_L-elsbetiae_contig651.15201.1 ID=prot_L-elsbetiae_contig651.15201.1|Name=mRNA_L-elsbetiae_contig651.15201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=261bp
LARAGAHLLRDMLTVDRCGEPVEAMFDKAEKVCNQTRKLRETRVAKTSGS
MGDSSNMRKSRVGMVEATAEEREQMIEIYTRLVFTNGIQSVMDAIGEVDP
SFVEWGMERLAAAKEVSTSFERDEIKNNDHLFGIYPKEVAEGRRRKAGVL
KLGMPIKAKQSESADRKLEMACKEHDIHGHGIVRWCMVMAFAGREMLKKH
NNGKLSRFFGPLQANGKQLSRSVFGDVFRECARSFFGEANMSIASMRSVQ
DTLAVEYGREL
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mRNA from alignment at L-elsbetiae_contig651:1504..2445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig651.15201.1 ID=mRNA_L-elsbetiae_contig651.15201.1|Name=mRNA_L-elsbetiae_contig651.15201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig651:1504..2445- (Laminarionema elsbetiae ELsaHSoW15)
CTCGCGCGTGCCGGTGCGCATCTTCTCAGGGACATGTTGACAGTGGATCG
TTGCGGAGAGCCGGTGGAGGCCATGTTCGACAAAGCCGAGAAGGTCTGCA
ACCAAACGCGCAAACTCCGAGAAACCCGAGTCGCGAAGACCAGCGGGAGC
ATGGGCGATTCTTCAAACATGCGAAAGTCGAGGGTCGGAATGGTGGAAGC
CACTGCCGAGGAGAGGGAGCAAATGATCGAGATTTATACGCGGCTCGTCT
TCACCAACGGGATCCAGTCCGTGATGGACGCAATCGGCGAAGTCGACCCA
AGCTTTGTCGAGTGGGGAATGGAGCGTCTGGCAGCAGCGAAAGAGGTGTC
CACCAGCTTCGAACGAGACGAGATCAAGAACAATGACCACCTGTTCGGCA
TATATCCCAAGGAAGTGGCTGAGGGGAGGAGGAGGGTCACTGGGCTCTTG
GAGAAGTTGGGGGCAAAGGGAATCACCTGTCGACACTTCACGGTCTTCAG
CGTGGCGACAATGCTTACCATCGACGTCAGCGGAGCCACCATTCGCACGA
AAGATTTCTTTGCCTTGTTGCTCAAAACCATGTGGTACGACAAGAAAGCT
GGCGTACTCAAGCTTGGCATGCCTATCAAAGCAAAGCAGAGTGAGTCCGC
CGATCGCAAGTTGGAGATGGCGTGCAAGGAGCACGACATCCACGGACACG
GGATCGTGAGGTGGTGCATGGTGATGGCTTTTGCTGGGAGAGAGATGCTC
AAGAAGCACAACAACGGGAAACTGAGCCGCTTCTTTGGACCGTTGCAAGC
AAACGGGAAACAGCTCAGCAGGTCTGTGTTCGGCGACGTGTTCAGGGAGT
GCGCGCGGTCGTTTTTCGGCGAGGCGAATATGAGCATCGCTTCCATGCGG
AGCGTCCAGGATACGCTGGCCGTCGAGTACGGGCGCGAACTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig651:1504..2445-

>mRNA_L-elsbetiae_contig651.15201.1 ID=mRNA_L-elsbetiae_contig651.15201.1|Name=mRNA_L-elsbetiae_contig651.15201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1566bp|location=Sequence derived from alignment at L-elsbetiae_contig651:1504..2445- (Laminarionema elsbetiae ELsaHSoW15)
CTCGCGCGTGCCGGTGCGCATCTTCTCAGGGACATGTTGACAGTGGATCG
TTGCGGAGAGCCGGTGGAGGCCATGTTCGACAAAGCCGAGAAGGTCTGCA
ACCAAACGCGCAAACTCCGAGAAACCCGAGTCGCGAAGACCAGCGGGAGC
ATGGGCGATTCTTCAAACATGCGAAAGTCGAGGGTCGGAATGGTGGAAGC
CACTGCCGAGGAGAGGGAGCAAATGATCGAGATTTATACGCGGCTCGTCT
TCACCAACGGGATCCAGTCCGTGATGGACGCAATCGGCGAAGTCGACCCA
AGCTTTGTCGAGTGGGGAATGGAGCGTCTGGCAGCAGCGAAAGAGGTGTC
CACCAGCTTCGAACGAGACGAGATCAAGAACAATGACCACCTGTTCGGCA
TATATCCCAAGGAAGTGGCTGAGGGGAGGAGGAGGCTCGCGCGTGCCGGT
GCGCATCTTCTCAGGGACATGTTGACAGTGGATCGTTGCGGAGAGCCGGT
GGAGGCCATGTTCGACAAAGCCGAGAAGGTCTGCAACCAAACGCGCAAAC
TCCGAGAAACCCGAGTCGCGAAGACCAGCGGGAGCATGGGCGATTCTTCA
AACATGCGAAAGTCGAGGGTCGGAATGGTGGAAGCCACTGCCGAGGAGAG
GGAGCAAATGATCGAGATTTATACGCGGCTCGTCTTCACCAACGGGATCC
AGTCCGTGATGGACGCAATCGGCGAAGTCGACCCAAGCTTTGTCGAGTGG
GGAATGGAGCGTCTGGCAGCAGCGAAAGAGGTGTCCACCAGCTTCGAACG
AGACGAGATCAAGAACAATGACCACCTGTTCGGCATATATCCCAAGGAAG
TGGCTGAGGGGAGGAGGAGGAAAGCTGGCGTACTCAAGCTTGGCATGCCT
ATCAAAGCAAAGCAGAGTGAGTCCGCCGATCGCAAGTTGGAGATGGCGTG
CAAGGAGCACGACATCCACGGACACGGGATCGTGAGGTGGTGCATGGTGA
TGGCTTTTGCTGGGAGAGAGATGCTCAAGAAGCACAACAACGGGAAACTG
AGCCGCTTCTTTGGACCGTTGCAAGCAAACGGGAAACAGCTCAGCAGGTC
TGTGTTCGGCGACGTGTTCAGGGAGTGCGCGCGGTCGTTTTTCGGCGAGG
CGAATATGAGCATCGCTTCCATGCGGAGCGTCCAGGATACGCTGGCCGTC
GAGTACGGGCGCGAACTGAAAGCTGGCGTACTCAAGCTTGGCATGCCTAT
CAAAGCAAAGCAGAGTGAGTCCGCCGATCGCAAGTTGGAGATGGCGTGCA
AGGAGCACGACATCCACGGACACGGGATCGTGAGGTGGTGCATGGTGATG
GCTTTTGCTGGGAGAGAGATGCTCAAGAAGCACAACAACGGGAAACTGAG
CCGCTTCTTTGGACCGTTGCAAGCAAACGGGAAACAGCTCAGCAGGTCTG
TGTTCGGCGACGTGTTCAGGGAGTGCGCGCGGTCGTTTTTCGGCGAGGCG
AATATGAGCATCGCTTCCATGCGGAGCGTCCAGGATACGCTGGCCGTCGA
GTACGGGCGCGAACTG
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