mRNA_L-elsbetiae_contig6509.15200.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6509.15200.1
Unique NamemRNA_L-elsbetiae_contig6509.15200.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6509.15200.1 vs. uniprot
Match: D8LBW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBW8_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 6.250e-10
Identity = 32/53 (60.38%), Postives = 35/53 (66.04%), Query Frame = 3 
Query:   72 VVRLLGSSTSTETPRDPAALLIFHRHGDRSPLRGHTPDEELALPAATCNAGAG 230
            V R L S  S    +   +LL+FHRHGDRSPLRGHTPDEELALP A   A  G
Sbjct:   40 VGRPLCSKASGSETQGLLSLLVFHRHGDRSPLRGHTPDEELALPTAAAPAAPG 92
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6509.15200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBW8_ECTSI6.250e-1060.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6509contigL-elsbetiae_contig6509:5897..7330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue6e-08
Seed eggNOG ortholog2880.D8LBW8
Preferred nameMBAP2
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.acid phosphatase activity
EggNOG OGsKOG3720@1,KOG3720@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionHistidine phosphatase superfamily
Ec32 orthologEc-20_003560.1
Exons2
Model size293
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6509.15200.1prot_L-elsbetiae_contig6509.15200.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6509 5929..7288 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.0611808-UTR-L-elsbetiae_contig6509:5896..59281622816719.0611808-UTR-L-elsbetiae_contig6509:5896..5928Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6509 5897..5928 +
1691683763.201698-UTR-L-elsbetiae_contig6509:5896..59281691683763.201698-UTR-L-elsbetiae_contig6509:5896..5928Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6509 5897..5928 +
1622816719.0967112-UTR-L-elsbetiae_contig6509:7288..73301622816719.0967112-UTR-L-elsbetiae_contig6509:7288..7330Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6509 7289..7330 +
1691683763.242753-UTR-L-elsbetiae_contig6509:7288..73301691683763.242753-UTR-L-elsbetiae_contig6509:7288..7330Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6509 7289..7330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.0737133-CDS-L-elsbetiae_contig6509:5928..60111622816719.0737133-CDS-L-elsbetiae_contig6509:5928..6011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6509 5929..6011 +
1691683763.214747-CDS-L-elsbetiae_contig6509:5928..60111691683763.214747-CDS-L-elsbetiae_contig6509:5928..6011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6509 5929..6011 +
1622816719.0863895-CDS-L-elsbetiae_contig6509:7152..72881622816719.0863895-CDS-L-elsbetiae_contig6509:7152..7288Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6509 7153..7288 +
1691683763.2255204-CDS-L-elsbetiae_contig6509:7152..72881691683763.2255204-CDS-L-elsbetiae_contig6509:7152..7288Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6509 7153..7288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6509.15200.1

>prot_L-elsbetiae_contig6509.15200.1 ID=prot_L-elsbetiae_contig6509.15200.1|Name=mRNA_L-elsbetiae_contig6509.15200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MIAFSRRRLRHACVVRLLGSSTSTETPRDPAALLIFHRHGDRSPLRGHTP
DEELALPAATCNAGAGAVGRAW*
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mRNA from alignment at L-elsbetiae_contig6509:5897..7330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6509.15200.1 ID=mRNA_L-elsbetiae_contig6509.15200.1|Name=mRNA_L-elsbetiae_contig6509.15200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig6509:5897..7330+ (Laminarionema elsbetiae ELsaHSoW15)
TAGCACCCCTTCACGAACGCGCTGCATGCTCCATGATTGCGTTTTCCAGG
AGGCGATTGCGCCACGCATGTGTTGTGCGGTTGCTGGGTTCTTCCACGTC
AACGGAAACACCGAGGTCCGTATTTTTTATTTTTGTAGACAGATACCAAG
TGAGTGCTCGTGTGTACAGGTACCGTAGGTGACACAAGATACCATACCCC
CTGGACAGATTTTCAAAGTTCGATTCCTCCCCACAGCAAGAAGAGTGAAA
CCGCTGAAAGGGGTGGCATTGGAAAGATCTAGTCGAGGGCTATCCGAAAA
TGTGTCGTTTGGTGCTGGAACCCTCTTCGTTACGGGGTAATGGAGCTCTA
AAAGTCGGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAGTGCTAC
GGCATGGTTCACGCCTACACCACTACCGGGCAATATCAGTGTTTTTGCAG
CAGAAGAAACTCAGCAGAACTAGATTATGTATCTATCTAGATAGGCAGCA
GTAAAGACACATCAGTATCTAACGTGCGTCGGTCCACATTCACTAGATAC
CGCTGTGGACTACAGATAGTAGTAGTCGTGATCCGACTTGAATACATACG
TATACGCTCACACATAGACTCTCCGATGGGGGTGAGGTTCGCGCTATATG
TCATAGTTTGCATGGCTTTGCCTCACAGCAATATATTGTAGTGGTTACAA
AAGTATAGTCTACCCTCTCACGGGGATCGTCTCTGACTTGATGTAGATGA
CACAAGGTACCACCCCCCCCGGTGATACATTTGGGCGCTTGGAAATATTT
TTATTCTCACCGGGGGGTAGTTTTCTGTGGGGGGGGTTAATATCTTGTGT
CATCTACCGTACAAACATAGGACACGGGAGAGCCTATTTGGAGGACGCAC
CTGCAAATAATAGTTGCATGGACTTTTTTTGACACACTCTTTTTACAAGG
TGCCTACACCGACCCGACCCAACCCCAACCCCAACCCTAACCCTAACCCC
AACCCCAACCCGTAACCGTGACCTTTTGGCCGGTCCGGGGCCTAAAAGTG
CCTCGCGCCGGCTTCGCCGCGCGTTCGGCAGCCGTTCGTGAAAAAAAACA
CACGGCCGGTTGTTGGCCAATCAGAGGAACGTCCTGCACACGCCATTCGT
TGCGGGTGCGTCCTGCAAATAGGGTCTCCCCCCATAGGACACCCCCATAT
CATCTCCGTCGGTCCTGTGACCTCTCAACGATTCCTTCCGCCTTCCACTT
CGCCAGGGACCCCGCTGCGTTGCTCATTTTCCATCGGCACGGAGATAGGT
CTCCTCTCAGGGGGCATACGCCAGACGAGGAGCTGGCTCTTCCCGCAGCG
ACATGCAACGCAGGTGCTGGTGCCGTTGGTAGGGCTTGGTAGGGCGGCAG
GCACCCTTGGTCTCTCACCTCCGCTGCCGGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6509:5897..7330+

>mRNA_L-elsbetiae_contig6509.15200.1 ID=mRNA_L-elsbetiae_contig6509.15200.1|Name=mRNA_L-elsbetiae_contig6509.15200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig6509:5897..7330+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTGCGTTTTCCAGGAGGCGATTGCGCCACGCATGTGTTGTGCGGTT
GCTGGGTTCTTCCACGTCAACGGAAACACCGAGATGATTGCGTTTTCCAG
GAGGCGATTGCGCCACGCATGTGTTGTGCGGTTGCTGGGTTCTTCCACGT
CAACGGAAACACCGAGGGACCCCGCTGCGTTGCTCATTTTCCATCGGCAC
GGAGATAGGTCTCCTCTCAGGGGGCATACGCCAGACGAGGAGCTGGCTCT
TCCCGCAGCGACATGCAACGCAGGTGCTGGTGCCGTTGGTAGGGCTTGGT
AGGGACCCCGCTGCGTTGCTCATTTTCCATCGGCACGGAGATAGGTCTCC
TCTCAGGGGGCATACGCCAGACGAGGAGCTGGCTCTTCCCGCAGCGACAT
GCAACGCAGGTGCTGGTGCCGTTGGTAGGGCTTGGTAG
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