mRNA_L-elsbetiae_contig6507.15198.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6507.15198.1
Unique NamemRNA_L-elsbetiae_contig6507.15198.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6507.15198.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.890e-5
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = -2 
Query:  639 HATDGMVNVVNKRCTHHGCTKQPSYGKAGGK 731
            H    MVNVV+KRC H GCTKQPSYG+AG K
Sbjct:   28 HKQQDMVNVVSKRCGHPGCTKQPSYGRAGSK 58
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6507.15198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE1.890e-570.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6507contigL-elsbetiae_contig6507:9625..10356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size732
Cds size732
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.9682124-CDS-L-elsbetiae_contig6507:9624..103561622816718.9682124-CDS-L-elsbetiae_contig6507:9624..10356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6507 9625..10356 +
1691683763.156791-CDS-L-elsbetiae_contig6507:9624..103561691683763.156791-CDS-L-elsbetiae_contig6507:9624..10356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6507 9625..10356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6507.15198.1prot_L-elsbetiae_contig6507.15198.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6507 9625..10356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6507.15198.1

>prot_L-elsbetiae_contig6507.15198.1 ID=prot_L-elsbetiae_contig6507.15198.1|Name=mRNA_L-elsbetiae_contig6507.15198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
SAGSAGSAGSAGSAGSALQGNPISSVFTASDSGRVPNVSSSGTLLSAPSL
FTRTGCKLSPSALRRARLLGSLLLPEEASAGVGEGARPLRLPPEPASIAV
PLPRASASAVLSLPLLFSLDRPETQGMPSSVCRAQNFRLPVFPSPHLALV
VHPGTAHLLLMTFSIPFSAWSRQYSALPPAWPNDGRLVQPWWVHLLLTTF
TIPSVAWSRQYSTLPPALPYDGCLVQPWWVHLLLTTFTIPSVA*
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mRNA from alignment at L-elsbetiae_contig6507:9625..10356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6507.15198.1 ID=mRNA_L-elsbetiae_contig6507.15198.1|Name=mRNA_L-elsbetiae_contig6507.15198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig6507:9625..10356+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCAGGCTCCGCAGGCTCCGCAGGCTCCGCAGGCTCCGCAGGCTCCGC
CTTGCAAGGCAACCCCATATCTTCCGTCTTCACAGCGTCTGACTCCGGAC
GTGTCCCAAACGTCTCGTCGTCGGGCACCTTGTTGTCAGCCCCCTCTCTT
TTCACCCGGACCGGATGCAAGCTCTCACCATCAGCACTCCGGCGGGCTCG
TTTGTTGGGCTCCTTGCTCCTTCCCGAGGAAGCCTCCGCCGGAGTGGGTG
AAGGAGCCCGGCCCCTCCGTCTTCCACCGGAACCAGCATCGATAGCTGTG
CCGCTACCCCGTGCTTCCGCTTCAGCAGTTCTATCGCTTCCTTTGCTGTT
CTCGCTGGACCGGCCAGAAACACAGGGCATGCCTTCCTCCGTGTGTCGTG
CGCAGAACTTCCGGCTGCCAGTGTTTCCCTCGCCGCATCTGGCCCTTGTG
GTGCACCCAGGGACCGCACACCTCTTGCTGATGACGTTCTCCATCCCGTT
CTCGGCATGGTCACGGCAGTACTCCGCTCTGCCGCCAGCGTGGCCGAATG
ACGGCCGCTTGGTGCAACCGTGGTGGGTGCACCTCTTGTTGACGACATTC
ACCATCCCGTCAGTGGCATGGTCACGGCAGTACTCCACCTTGCCGCCAGC
CTTGCCGTATGACGGCTGCTTGGTACAACCGTGGTGGGTGCACCTCTTGT
TGACGACATTCACCATCCCGTCCGTGGCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6507:9625..10356+

>mRNA_L-elsbetiae_contig6507.15198.1 ID=mRNA_L-elsbetiae_contig6507.15198.1|Name=mRNA_L-elsbetiae_contig6507.15198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1464bp|location=Sequence derived from alignment at L-elsbetiae_contig6507:9625..10356+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCAGGCTCCGCAGGCTCCGCAGGCTCCGCAGGCTCCGCAGGCTCCGC
CTTGCAAGGCAACCCCATATCTTCCGTCTTCACAGCGTCTGACTCCGGAC
GTGTCCCAAACGTCTCGTCGTCGGGCACCTTGTTGTCAGCCCCCTCTCTT
TTCACCCGGACCGGATGCAAGCTCTCACCATCAGCACTCCGGCGGGCTCG
TTTGTTGGGCTCCTTGCTCCTTCCCGAGGAAGCCTCCGCCGGAGTGGGTG
AAGGAGCCCGGCCCCTCCGTCTTCCACCGGAACCAGCATCGATAGCTGTG
CCGCTACCCCGTGCTTCCGCTTCAGCAGTTCTATCGCTTCCTTTGCTGTT
CTCGCTGGACCGGCCAGAAACACAGGGCATGCCTTCCTCCGTGTGTCGTG
CGCAGAACTTCCGGCTGCCAGTGTTTCCCTCGCCGCATCTGGCCCTTGTG
GTGCACCCAGGGACCGCACACCTCTTGCTGATGACGTTCTCCATCCCGTT
CTCGGCATGGTCACGGCAGTACTCCGCTCTGCCGCCAGCGTGGCCGAATG
ACGGCCGCTTGGTGCAACCGTGGTGGGTGCACCTCTTGTTGACGACATTC
ACCATCCCGTCAGTGGCATGGTCACGGCAGTACTCCACCTTGCCGCCAGC
CTTGCCGTATGACGGCTGCTTGGTACAACCGTGGTGGGTGCACCTCTTGT
TGACGACATTCACCATCCCGTCCGTGGCATGATCCGCAGGCTCCGCAGGC
TCCGCAGGCTCCGCAGGCTCCGCAGGCTCCGCCTTGCAAGGCAACCCCAT
ATCTTCCGTCTTCACAGCGTCTGACTCCGGACGTGTCCCAAACGTCTCGT
CGTCGGGCACCTTGTTGTCAGCCCCCTCTCTTTTCACCCGGACCGGATGC
AAGCTCTCACCATCAGCACTCCGGCGGGCTCGTTTGTTGGGCTCCTTGCT
CCTTCCCGAGGAAGCCTCCGCCGGAGTGGGTGAAGGAGCCCGGCCCCTCC
GTCTTCCACCGGAACCAGCATCGATAGCTGTGCCGCTACCCCGTGCTTCC
GCTTCAGCAGTTCTATCGCTTCCTTTGCTGTTCTCGCTGGACCGGCCAGA
AACACAGGGCATGCCTTCCTCCGTGTGTCGTGCGCAGAACTTCCGGCTGC
CAGTGTTTCCCTCGCCGCATCTGGCCCTTGTGGTGCACCCAGGGACCGCA
CACCTCTTGCTGATGACGTTCTCCATCCCGTTCTCGGCATGGTCACGGCA
GTACTCCGCTCTGCCGCCAGCGTGGCCGAATGACGGCCGCTTGGTGCAAC
CGTGGTGGGTGCACCTCTTGTTGACGACATTCACCATCCCGTCAGTGGCA
TGGTCACGGCAGTACTCCACCTTGCCGCCAGCCTTGCCGTATGACGGCTG
CTTGGTACAACCGTGGTGGGTGCACCTCTTGTTGACGACATTCACCATCC
CGTCCGTGGCATGA
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