mRNA_L-elsbetiae_contig6505.15194.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6505.15194.1
Unique NamemRNA_L-elsbetiae_contig6505.15194.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6505.15194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6505contigL-elsbetiae_contig6505:3331..3915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000620.1
Exons2
Model size392
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.6974468-CDS-L-elsbetiae_contig6505:3331..34411622816718.6974468-CDS-L-elsbetiae_contig6505:3331..3441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6505 3332..3441 -
1691683762.9899225-CDS-L-elsbetiae_contig6505:3331..34411691683762.9899225-CDS-L-elsbetiae_contig6505:3331..3441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6505 3332..3441 -
1622816718.7131937-CDS-L-elsbetiae_contig6505:3635..39151622816718.7131937-CDS-L-elsbetiae_contig6505:3635..3915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6505 3636..3915 -
1691683763.0075023-CDS-L-elsbetiae_contig6505:3635..39151691683763.0075023-CDS-L-elsbetiae_contig6505:3635..3915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6505 3636..3915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6505.15194.1prot_L-elsbetiae_contig6505.15194.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6505 3332..3915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6505.15194.1

>prot_L-elsbetiae_contig6505.15194.1 ID=prot_L-elsbetiae_contig6505.15194.1|Name=mRNA_L-elsbetiae_contig6505.15194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
YNHPCFLLRVLSNIAQDQIMKNYFTDAQSPLGIEPRRQQNPTSGSKFVVR
THKPDVPEDQKMVVEQLQRSVILKVGRIGGQDGDVRRLSHAPQDEAIKTE
ISRDIERAFEDLATQQNDKVYEAKGLLREA
back to top

mRNA from alignment at L-elsbetiae_contig6505:3331..3915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6505.15194.1 ID=mRNA_L-elsbetiae_contig6505.15194.1|Name=mRNA_L-elsbetiae_contig6505.15194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=585bp|location=Sequence derived from alignment at L-elsbetiae_contig6505:3331..3915- (Laminarionema elsbetiae ELsaHSoW15)
TACAACCATCCCTGTTTTCTATTACGGGTACTCAGCAATATTGCACAAGA
TCAGATCATGAAAAATTACTTTACCGATGCACAATCACCGCTGGGGATCG
AGCCCAGGCGACAGCAGAACCCGACGTCGGGCAGCAAATTCGTGGTCAGG
ACCCACAAACCCGACGTACCGGAAGACCAGAAAATGGTCGTGGAGCAGCT
GCAGCGGTCGGTGATCCTCAAGGTGGGCCGTATCGGTGGCCAAGATGGAG
ACGTTCGTAGGCTCTCGCACGCCCCCCAAGGTGCGTTCTGGGTTCGGTAG
AATGGAGGGGTGATGGAAGAGCATGGCTTCGCTGAAATTGGTTGGTGTTG
CTAGGCGCGCACATGTGTAGTAGTATAGTCCTCCCTCGCACGCTTGCCAC
ACTTTATTACGACCCGTTCTCATCCAATCTCGCTGCCGACGAAAAACAAA
AACCCACACGCCGACGCGCCACAGACGAAGCGATCAAGACCGAGATCTCG
AGAGACATCGAGCGCGCGTTCGAAGACCTGGCGACCCAACAGAACGACAA
AGTGTACGAGGCGAAGGGGCTGCTCAGAGAGGCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6505:3331..3915-

>mRNA_L-elsbetiae_contig6505.15194.1 ID=mRNA_L-elsbetiae_contig6505.15194.1|Name=mRNA_L-elsbetiae_contig6505.15194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig6505:3331..3915- (Laminarionema elsbetiae ELsaHSoW15)
TACAACCATCCCTGTTTTCTATTACGGGTACTCAGCAATATTGCACAAGA
TCAGATCATGAAAAATTACTTTACCGATGCACAATCACCGCTGGGGATCG
AGCCCAGGCGACAGCAGAACCCGACGTCGGGCAGCAAATTCGTGGTCAGG
ACCCACAAACCCGACGTACCGGAAGACCAGAAAATGGTCGTGGAGCAGCT
GCAGCGGTCGGTGATCCTCAAGGTGGGCCGTATCGGTGGCCAAGATGGAG
ACGTTCGTAGGCTCTCGCACGCCCCCCAAGTACAACCATCCCTGTTTTCT
ATTACGGGTACTCAGCAATATTGCACAAGATCAGATCATGAAAAATTACT
TTACCGATGCACAATCACCGCTGGGGATCGAGCCCAGGCGACAGCAGAAC
CCGACGTCGGGCAGCAAATTCGTGGTCAGGACCCACAAACCCGACGTACC
GGAAGACCAGAAAATGGTCGTGGAGCAGCTGCAGCGGTCGGTGATCCTCA
AGGTGGGCCGTATCGGTGGCCAAGATGGAGACGTTCGTAGGCTCTCGCAC
GCCCCCCAAGACGAAGCGATCAAGACCGAGATCTCGAGAGACATCGAGCG
CGCGTTCGAAGACCTGGCGACCCAACAGAACGACAAAGTGTACGAGGCGA
AGGGGCTGCTCAGAGAGGCGACGAAGCGATCAAGACCGAGATCTCGAGAG
ACATCGAGCGCGCGTTCGAAGACCTGGCGACCCAACAGAACGACAAAGTG
TACGAGGCGAAGGGGCTGCTCAGAGAGGCG
back to top