mRNA_L-elsbetiae_contig6504.15192.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6504.15192.1
Unique NamemRNA_L-elsbetiae_contig6504.15192.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6504.15192.1 vs. uniprot
Match: D7FMG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG6_ECTSI)

HSP 1 Score: 509 bits (1312), Expect = 5.130e-159
Identity = 292/526 (55.51%), Postives = 348/526 (66.16%), Query Frame = 1 
Query:    1 FLQVSEHVTDDGGDVDDGVLEDSAEVIVGAMENLVSSDIVQKAGEVAGPAIDVVHDALREGAKKGAGIVHGTARALNTADGVASEGMPEIDGIDEVAKDYVEAMD-----LGGSVREAFDELRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVIPGVGVAPPSIHLIHGAGKATAGISGLVTGGVIALVGGVYGAAAAPFDGGAAWGKIINVSRKPSAWGASMSAEGSLIAAKGAVGFVNQV*MQVATIPAKIGCKLGANWVNRSRNSSREVVSQGEDDFEGVITEEMMQTERTYQIFSTDGKRLLQASDAKSSRCLKLFGYTWGGYSLTFGGP-PLPPSSAETQEEQG--------------------------------------------------ERERSSSFSFSGCPGAYRLHSGMHGDNTLFFLGACYPTEWVVWDVGGKTSGAWEKLELRWREGGKKFTISGHGGQHVKWKQSEGVFKGTRTESKATEFVLKEKSSGS 1410
            F +VSEH++DDG +VDDG+LEDSAE IVGA+E++ +++IVQ AGE+ G A+ VVHDALREG K G  +VHG ARA+N A GV S GMP+I+G++E A+ Y E+M+     L  S  EAFD  R                    XXXXXXXXXXXX                  IP  G   PS +LIHG  KA AG + L   G +ALVGGVYG AAAPFDGGA+WGK+ N SR  S WGASM AEG LI+AKGA+GF +QV    AT+P K+ CK+GAN++N+ RNSSR V +QGEDDFEGV+TEEM+QTE++Y+IFS DG RL++AS+ KSSRC K FGY WGGY+L F  P P  PS+AETQE+Q                                                     ERSSSF FSG PGAYRLHS MHG NTLFFLG CYP EWVVWDVGGKT GAWE+LELRW+EGGKKFTISGHGGQHV+WK ++G F+GTR+ESKATEFVLKEK S +
Sbjct:  195 FKRVSEHISDDGANVDDGILEDSAEAIVGAVESVANNEIVQNAGELVGDAVGVVHDALREGVKTGTEVVHGAARAMNKAGGVTSRGMPDIEGVEERAERYAESMETQAEGLSDSAAEAFDRARENAPDVLRAVDPDGTLEEAVXXXXXXXXXXXXEVLGGEIAEEALEAAVGSIPVAGALIPSYYLIHGGVKAAAGATSLAAAGTMALVGGVYGLAAAPFDGGASWGKVANASRGASVWGASMGAEGGLISAKGAMGFADQV-APGATVPVKVACKMGANYINQMRNSSRGVNTQGEDDFEGVVTEEMVQTEKSYEIFSADGTRLVRASNTKSSRCNKFFGYAWGGYALMFESPCPSQPSAAETQEDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHKEREERSSSFYFSGSPGAYRLHSDMHGGNTLFFLGKCYPAEWVVWDVGGKTDGAWERLELRWQEGGKKFTISGHGGQHVRWKDADGFFRGTRSESKATEFVLKEKISSA 719
[Close]
BLAST of mRNA_L-elsbetiae_contig6504.15192.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 7.200e-72
Identity = 128/194 (65.98%), Postives = 147/194 (75.77%), Query Frame = 2 
Query: 2060 HHRLILAAIGYRRKRGTYRQLSYAPALKLVGCQTVEATVRQRRLLFAGALARQPDGRLPKRLIFGELLGGEDPGGGSPEQNWGKCLKDDFKAFGATHGSTAELPRVFGIHRSTWPTAARVAGGVPWHTGVPRGAERFMASWHKAEEEASRQRTIERDNKGPNNRKNTATTNRGTRPENIGTARDVRRRAEADAV 2641
            HHRL+L  IGYRRKRGTYRQLSYA ALK VGCQ+VEATVRQRRLLFAGA+ARQPDGRLPKRL+FGEL+GGEDPG G+PEQNW  CLKDD K F A +GST + P VFG+ +  W  AA+V GGVPWH GV +GAERFMASWHK +EEA+RQR I+R + GP N  +TA  N           R+  +R E D V
Sbjct:  155 HHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEANRQRAIKRGDSGPKNSLDTAPINGAVGGRKETARREESKREETDRV 348
[Close]
BLAST of mRNA_L-elsbetiae_contig6504.15192.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 8.780e-70
Identity = 131/196 (66.84%), Postives = 146/196 (74.49%), Query Frame = 2 
Query: 2060 HHRLILAAIGYRRKRGTYRQLSYAPALKLVGCQTVEATVRQRRLLFAGALARQPDGRLPKRLIFGELLGGEDPGGGSPEQNWGKCLKDDFKAFGATHGSTAELPRVFGIHRSTWPTAARVAGGVPWHTGVPRGAERFMASWHKAEEEASRQRTIERDNKGPNNRKNTATTNR--GTRPENIGTARDVRRRAEADAV 2641
            HHRL L  IGYRRKRGTYRQLSYA ALK VGCQ+VEATVRQR LLFAGA+ARQPDGRLPKRL+FGEL+GGE+PG GSPEQNW  CLKDD K F A HGST +    FGI +  W  AA+V GGVPWH GV +GAERFMASWHK EE+ASRQR I+R + GP    +TA      G R E   TAR+  +R E D V
Sbjct:   17 HHRLPLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKRGDSGPKKSLDTAPIYGAGGGREE---TAREESKREETDRV 209
[Close]
BLAST of mRNA_L-elsbetiae_contig6504.15192.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 3.800e-69
Identity = 127/194 (65.46%), Postives = 146/194 (75.26%), Query Frame = 2 
Query: 2060 HHRLILAAIGYRRKRGTYRQLSYAPALKLVGCQTVEATVRQRRLLFAGALARQPDGRLPKRLIFGELLGGEDPGGGSPEQNWGKCLKDDFKAFGATHGSTAELPRVFGIHRSTWPTAARVAGGVPWHTGVPRGAERFMASWHKAEEEASRQRTIERDNKGPNNRKNTATTNRGTRPENIGTARDVRRRAEADAV 2641
            HHRL+L  IGYRRK GTYRQLSYA ALK VGCQ+VEATVRQRRLLFAGA+ARQPDGRLPKRL+FGEL+GGEDPG G+PEQNW  CLKDD K F A +GST + P VFG+ +  W  AA+V GGVPWH GV +GAERF ASWHK +E+ASRQR I+R + GP N  +TA  N          AR+  +R E D V
Sbjct:  277 HHRLLLRVIGYRRKGGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFTASWHKGKEKASRQRAIKRGDSGPKNSLDTAPINGAVGGRKETAAREESKREETDRV 470
[Close]
BLAST of mRNA_L-elsbetiae_contig6504.15192.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 2.640e-68
Identity = 133/196 (67.86%), Postives = 152/196 (77.55%), Query Frame = 2 
Query: 2060 HHRLILAAIGYRRKRGTYRQLSYAPALKLVGCQTVEATVRQRRLLFAGALARQPDGRLPKRLIFGELLGGEDPGGGSPEQNWGKCLKDDFKAFGATHGSTAELPRVFGIHRSTWPTAARVAGGVPWHTGVPRGAERFMASWHKAEEEASRQRTIERDNKGPNNRKNTATTNR--GTRPENIGTARDVRRRAEADAV 2641
            HHRL+L  IGYRRKRGTYRQLSYA ALK VGCQ+VEATVRQRRLLFAGA+ARQPDGRLPKRL+FGEL+GGEDPG G+PEQNW  CLKDD K F A +GST + P VFG+ +  W  AA+V GGVPWH GV +GA+RFMASWHK EE+ASRQR I+R + GP N  +TA  N   G R E   TAR+  +R E D V
Sbjct:  550 HHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGADRFMASWHKGEEKASRQRAIKRGDSGPKNSLDTAPINGAGGGREE---TAREESKREETDRV 742
[Close]
BLAST of mRNA_L-elsbetiae_contig6504.15192.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 2.330e-67
Identity = 133/196 (67.86%), Postives = 151/196 (77.04%), Query Frame = 2 
Query: 2060 HHRLILAAIGYRRKRGTYRQLSYAPALKLVGCQTVEATVRQRRLLFAGALARQPDGRLPKRLIFGELLGGEDPGGGSPEQNWGKCLKDDFKAFGATHGSTAELPRVFGIHRSTWPTAARVAGGVPWHTGVPRGAERFMASWHKAEEEASRQRTIERDNKGPNNRKNTATTNR--GTRPENIGTARDVRRRAEADAV 2641
            HHRL+L  IGYRRKRGTYRQLSYA ALK VGCQ+VEATVRQRRLLFAGA+ARQPDGRLPKRL+FGEL+GGE PG G+PEQNW  CLKDD K F A +GST + P VFG+ +  W  AA+V GGVPWH GV +GAERFMASWHK +EEASRQR I+R + GP N  +TA  N   G R E   TAR+  +R E D V
Sbjct:  606 HHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKRGDSGPKNSLDTAPINGAGGGREE---TAREESKREETDRV 798
[Close]
BLAST of mRNA_L-elsbetiae_contig6504.15192.1 vs. uniprot
Match: A0A6H5K9T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T5_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 7.780e-67
Identity = 133/270 (49.26%), Postives = 156/270 (57.78%), Query Frame = 1 
Query:  793 PAKIGCKLGANWVNRSRNSSREVVSQGEDDFEGVITEEMMQTERTYQIFSTDGKRLLQASDAKSSRCLKLFGYTWGGYSLTFGGP-PLPPSSAETQEEQGERERSSS---------------------------------------------------------------FSFSGCPGAYRLHSGMHGDNTLFFLGACYPTEWVVWDVGGKTSGAWEKLELRWREGGKKFTISGHGGQHVKWKQSEGVFKGTRTESKATEFVLKEKSSGS 1410
            P  + C L    + RSR    EV +QG+DDFEGV+T+EM+QT ++Y+IFS D  RL++AS+ KSSRC K  GY WGGY LTF GP P PPS+AETQE                                                                            SG P AYRLHS MHG NTLFFLG CYP EWVVWDVGGKT G+WE LELRW+EGGKKFTISGHGGQHV+WK ++GVF+GTR+E+KATEFVLKEK S +
Sbjct:  102 PTPLPCDLSPPLLRRSR----EVGAQGDDDFEGVVTKEMVQTGKSYEIFSADRTRLVRASNTKSSRCNKFLGYAWGGYVLTFEGPHPSPPSAAETQEXXXXXXXXXXEDQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSPDAYRLHSDMHGGNTLFFLGKCYPAEWVVWDVGGKTDGSWEMLELRWQEGGKKFTISGHGGQHVRWKDADGVFRGTRSENKATEFVLKEKISSA 367
[Close]
BLAST of mRNA_L-elsbetiae_contig6504.15192.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 1.520e-66
Identity = 132/196 (67.35%), Postives = 148/196 (75.51%), Query Frame = 2 
Query: 2060 HHRLILAAIGYRRKRGTYRQLSYAPALKLVGCQTVEATVRQRRLLFAGALARQPDGRLPKRLIFGELLGGEDPGGGSPEQNWGKCLKDDFKAFGATHGSTAELPRVFGIHRSTWPTAARVAGGVPWHTGVPRGAERFMASWHKAEEEASRQRTIERDNKGPNNRKNTATTNR--GTRPENIGTARDVRRRAEADAV 2641
            HHRL+L  IGYRRKRGTYRQLSYA ALK VGCQ+VEATVRQRRLLFAGA+ARQPDGRLPKRL+FGEL+GGE+PG GSPEQNW  CLKDD K F A HGST +    FGI +  W  AA+V GGVPWH GV +GAERFMASWHK EE+ASRQR I+R + GP    +TA  N   G R E    AR+  +R E D V
Sbjct:  438 HHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKRGDSGPKTSLDTAPINGAGGGREE---MAREESKREETDRV 630
[Close]
BLAST of mRNA_L-elsbetiae_contig6504.15192.1 vs. uniprot
Match: A0A6H5KX41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX41_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 4.240e-66
Identity = 129/194 (66.49%), Postives = 147/194 (75.77%), Query Frame = 2 
Query: 2060 HHRLILAAIGYRRKRGTYRQLSYAPALKLVGCQTVEATVRQRRLLFAGALARQPDGRLPKRLIFGELLGGEDPGGGSPEQNWGKCLKDDFKAFGATHGSTAELPRVFGIHRSTWPTAARVAGGVPWHTGVPRGAERFMASWHKAEEEASRQRTIERDNKGPNNRKNTATTNRGTRPENIGTARDVRRRAEADAV 2641
            HHRL+L  IGYRRKRGTYRQLSYA ALK VGCQ+VEATVRQRRLLFAGA+ARQPDGRLPKRL+FGEL+GGEDPG G+PEQNW  CLKDD K F A +GST + P VFG+ +  W  AA+V GGVPWH GV +GAERFMASWHK +EEASRQR I+R + GP N  +TA  N           R+  +R E D V
Sbjct:  879 HHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKRGDSGPKNSLDTAPINGAVGGRKETARREESKREETDRV 1072
[Close]
BLAST of mRNA_L-elsbetiae_contig6504.15192.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 2.720e-65
Identity = 129/194 (66.49%), Postives = 147/194 (75.77%), Query Frame = 2 
Query: 2060 HHRLILAAIGYRRKRGTYRQLSYAPALKLVGCQTVEATVRQRRLLFAGALARQPDGRLPKRLIFGELLGGEDPGGGSPEQNWGKCLKDDFKAFGATHGSTAELPRVFGIHRSTWPTAARVAGGVPWHTGVPRGAERFMASWHKAEEEASRQRTIERDNKGPNNRKNTATTNRGTRPENIGTARDVRRRAEADAV 2641
            HHRL+L  IGYRRKRGTYRQLSYA ALK VGCQ+VEATVRQRRLLFAGA+ARQPDGRLPKRL+FGEL+GGEDPG G+PEQNW  CLKDD K F A +GST + P VFG+ +  W  AA+V GGVPWH GV +GAERFMASWHK +EEASRQR I+R + GP N  +TA  N           R+  +R E D V
Sbjct: 1222 HHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKRGDSGPKNSLDTAPINGAVGGRKETARREESKREETDRV 1415
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6504.15192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMG6_ECTSI5.130e-15955.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWS4_9PHAE7.200e-7265.98Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KF72_9PHAE8.780e-7066.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLC4_9PHAE3.800e-6965.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ91_9PHAE2.640e-6867.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEX7_9PHAE2.330e-6767.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9T5_9PHAE7.780e-6749.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA81_9PHAE1.520e-6667.35Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KX41_9PHAE4.240e-6666.49Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K319_9PHAE2.720e-6566.49Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6504contigL-elsbetiae_contig6504:508..7113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size4666
Cds size690
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.547876-UTR-L-elsbetiae_contig6504:507..12791622816718.547876-UTR-L-elsbetiae_contig6504:507..1279Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6504 508..1279 +
1691683762.892656-UTR-L-elsbetiae_contig6504:507..12791691683762.892656-UTR-L-elsbetiae_contig6504:507..1279Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6504 508..1279 +
1622816718.5606802-UTR-L-elsbetiae_contig6504:1902..19041622816718.5606802-UTR-L-elsbetiae_contig6504:1902..1904Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6504 1903..1904 +
1691683762.9035344-UTR-L-elsbetiae_contig6504:1902..19041691683762.9035344-UTR-L-elsbetiae_contig6504:1902..1904Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6504 1903..1904 +
1622816718.6166267-UTR-L-elsbetiae_contig6504:3911..71131622816718.6166267-UTR-L-elsbetiae_contig6504:3911..7113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6504 3912..7113 +
1691683762.9609249-UTR-L-elsbetiae_contig6504:3911..71131691683762.9609249-UTR-L-elsbetiae_contig6504:3911..7113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6504 3912..7113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.5720654-CDS-L-elsbetiae_contig6504:1904..19811622816718.5720654-CDS-L-elsbetiae_contig6504:1904..1981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6504 1905..1981 +
1691683762.9140356-CDS-L-elsbetiae_contig6504:1904..19811691683762.9140356-CDS-L-elsbetiae_contig6504:1904..1981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6504 1905..1981 +
1622816718.5820932-CDS-L-elsbetiae_contig6504:2432..24691622816718.5820932-CDS-L-elsbetiae_contig6504:2432..2469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6504 2433..2469 +
1691683762.9249399-CDS-L-elsbetiae_contig6504:2432..24691691683762.9249399-CDS-L-elsbetiae_contig6504:2432..2469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6504 2433..2469 +
1622816718.592819-CDS-L-elsbetiae_contig6504:3064..31751622816718.592819-CDS-L-elsbetiae_contig6504:3064..3175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6504 3065..3175 +
1691683762.9380918-CDS-L-elsbetiae_contig6504:3064..31751691683762.9380918-CDS-L-elsbetiae_contig6504:3064..3175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6504 3065..3175 +
1622816718.6047409-CDS-L-elsbetiae_contig6504:3446..39111622816718.6047409-CDS-L-elsbetiae_contig6504:3446..3911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6504 3447..3911 +
1691683762.9507728-CDS-L-elsbetiae_contig6504:3446..39111691683762.9507728-CDS-L-elsbetiae_contig6504:3446..3911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6504 3447..3911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6504.15192.1prot_L-elsbetiae_contig6504.15192.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6504 1905..3911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6504.15192.1

>prot_L-elsbetiae_contig6504.15192.1 ID=prot_L-elsbetiae_contig6504.15192.1|Name=mRNA_L-elsbetiae_contig6504.15192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=230bp
MQVATIPAKIGCKLGANWVNRSRNSSREVVSQGEDDFEGVITEEMMQTER
TYQIFSTDGKRLLQASDAKSSRCLKLFGYTWGGYSLTFGGPPLPPSSAET
QEEQGERERSSSFSFSGCPGAYRLHSGMHGDNTLFFLGACYPTEWVVWDV
GGKTSGAWEKLELRWREGGKKFTISGHGGQHVKWKQSEGVFKGTRTESKA
TEFVLKEKSSGSCSSSSGGGGSSSSNNNS*
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mRNA from alignment at L-elsbetiae_contig6504:508..7113+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6504.15192.1 ID=mRNA_L-elsbetiae_contig6504.15192.1|Name=mRNA_L-elsbetiae_contig6504.15192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6606bp|location=Sequence derived from alignment at L-elsbetiae_contig6504:508..7113+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTTGCAGGTTTCTGAACACGTCACCGATGACGGGGGAGACGTAGACGA
CGGTGTCCTGGAAGATTCAGCGGAAGTAATCGTAGGTGCAATGGAGAATC
TGGTGAGCAGCGACATAGTCCAGAAGGCCGGGGAGGTGGCTGGGCCTGCG
ATCGACGTCGTGCACGATGCTCTTCGAGAAGGTGCCAAGAAAGGGGCGGG
GATCGTCCATGGAACAGCCCGCGCCTTGAATACCGCCGACGGGGTAGCCT
CTGAAGGCATGCCTGAAATTGACGGCATCGACGAAGTTGCCAAGGACTAC
GTCGAGGCGATGGATCTTGGCGGATCTGTCAGGGAGGCCTTCGACGAGCT
CAGGGAAAAAGCTCCGGACGTCCTCGAAGCCGTCGATCCTTCGGGAGCCG
GGGAAGAAGCGCTCGAAGCATGCGCGGAGCAAATGGGGAAAGCCGTGGTG
GGAATCGTGGGGGAGGCAGCCGCAGAAGAGTTGGCGGAAACGGTAGCCGA
AGTTATCCCCGGGGTGGGCGTCGCACCCCCCTCCATTCACTTGATCCATG
GGGCTGGCAAGGCGACCGCCGGAATAAGCGGTCTGGTTACGGGAGGCGTC
ATCGCCTTGGTCGGGGGTGTCTACGGCGCCGCGGCCGCGCCGTTCGATGG
AGGGGCGGCCTGGGGCAAGATCATTAACGTTTCGAGGAAGCCCTCTGCTT
GGGGCGCCAGCATGAGCGCCGAGGGGAGTCTGATCGCGGCCAAGGGAGCG
GTGGGGTTCGTGAACCAGGTTTGTTTGTACAATATTTTTCTCCACCCAAG
ACTTTCGTGACGTTATCGTATACATACATACATATGTTTATCGTCTCCTA
AAAGTCTAGAAATGCTTATTGACCTGGATTTCTATGCGTTGATTCTGAAA
TTTTGCTCTGCGTGCAACTGAAACGCGCCAAGGTGGGCCAGCCAGACGGT
TCCTAGAAAATGTTCCTCCGCACAGGTTACTTCCTACACGCGCCGGGCTG
CACTACATGATACCTGGAATCATATATTTTTTCCATTTAAGACGAGAGTT
TTTTACGCCTTTCAACAAAGAAGTGCGCGTGGCGTAGGGGAGAACGTCTT
GTCCTCTCATTCGCCCGACTAGGGTTCGATTCCCCGTGACGTCTATATTT
ATTTCTTGTCTGTTCTCCGTGCGAACGAAACAAAAGGCAGCAGCACGCAC
GCACACACCCCCGGGATACAATTTCCCTCGCCTCTATATATATTCCCTCC
GCTAAACCAAAGAATAAATAATTCAAAAGAAATAAACACACCACATACTA
ATCCCCGCCCGGTCGCTTCCAACAGGCGGGTGGGCGTTCGGGATGGCTCC
AAATCTTGCCTGACTACTTGTGTCCTCATACTTACCAGGTTCCAGGAATG
CAGGTCGCCACCATCCCGGCCAAAATTGGGTGCAAGCTCGGCGCGAACTG
GGTTAATCGGTCGCGTAACTCGAGGTAAACTTTCGAACACGGTTGTTGCG
CGAACGATGGGCTCGTGCATGTAAGTTACTCTTCGTATTGTTTCTTCTAC
GCCCCCCCCCCAAAAAGCGTTGCGTATGTATGAAGTAGGGGTGGAAACAT
TTAGGTGGTGGTGCTCAAGTGATTCTTGTTCGTCAGGCCAGAAGCGCTCA
CAGAGCTGTTGTTGCAGGAACACTGATAGTTTCAGAAACACTCAGATAAT
ACAGAAAGTGGGCTCCTCTTGGATAACAGCACTTGATGGTATGGCGCGCC
TTCATGTCTGTGTGTGTGGCCGACCAATCTTCTCGTGCCCTGCTGTGCAC
CCAAAATGTTTGCGCTGGTGCGCACTCGACTCTCCGCCATGCCAAGCTCT
TAAAACCTTTCTTCTCGTTGCCCCTTCCCACGGCCGCCGCCGCGCGCTCT
GTCGCTAATGTTTTTCGTGATGCAGCCGGGAGGTCGTTTCTCAGGGGGAG
GATGATTTTGAGGTGAGAGCTCAGGTGAACATATTTTCGTGAAGCGGGTG
GCGCTTGCTGGAATATTGAGGAGTTTTTTTTGTTTTAACGCTTGCTTCCG
GAGCTGAGGTCGGTACTCGCCCGCCCATGCGAGAAGGGTTGCGGGGACAG
CCCACGGAAGTGTTGTGCCCGTGGTGGGGTAGTAGATATACGATGCTCGC
GTAAATACCGACAACCGCCTCCCCAGTGCGGTTTCGACGCTGGCGCCAAG
AGAGGGGGTCTTGCACTGCGCCGGTGCTACTGCTGTTGTTGATTTCAAAT
CGGCATACACAGGCCCATTCCTGCCAAAAAGTACTGGTAAACACGAGACG
GGCCTTCCCCCACAGAACATGAGCATGGCCCCACCAACGATATACTCCGT
ATATACGTACACAAGCCTCGTGAAGATCCAGCCAAAGGACGAAAAAGAGA
GCAGCAAGATCACAGTGATACAACAATAGGCAGCCGAGAGGAGGGTGGCA
ACAAGCAGATTGCGGGGTAAGAAGTAGTCCAAGATGACGCCCTTCCCTCT
GGCACCGCTCATTGACCTCACCACCGTCTGTTCCCCCGCCCTCTTTCTTC
TGGGCAGGGCGTGATCACGGAGGAGATGATGCAGACTGAGAGAACGTATC
AGATCTTCTCTACGGACGGGAAGCGCCTCTTGCAGGCCAGCGATGCCAAG
TCCAGCCGCTGCCTCAAGGTACGGCGCTGCTGCCCGTTTCCTCTATCGAT
AGATACGTACCTCCACTCGAGGTGTTGAGTGAGAGAGGGTATCCGTATGT
AGGTACTCCCCAAGTACTCATTCCCTGCCGCAGCCGCTTTGGAAATATTG
GTGGGGGAGACCATCTCTGGTCCATCGACTCGTGATGCTGACCAGTACGA
GGACTGCATCATATCTTGCGTGCTCTTTCTTTGGCGCCGTGTACCGTATG
TGTCTACTCTTGGGCGCGTTCTGTTCCGTCGACACGTAGCTTTTCGGCTA
CACCTGGGGGGGATATTCTCTCACATTCGGAGGCCCACCCCTGCCCCCGT
CGTCGGCGGAGACTCAAGAAGAACAAGGAGAACGAGAACGTTCCTCGTCC
TTCTCCTTCTCAGGTTGCCCGGGCGCCTATCGCCTGCACAGCGGCATGCA
CGGTGACAATACACTGTTCTTCCTGGGGGCTTGCTACCCGACGGAGTGGG
TAGTCTGGGACGTCGGGGGGAAGACGAGCGGGGCGTGGGAGAAGCTGGAG
TTGAGGTGGCGGGAGGGCGGGAAGAAGTTCACGATCTCGGGGCACGGGGG
GCAGCACGTCAAGTGGAAGCAATCCGAGGGCGTCTTCAAGGGGACCCGGA
CTGAAAGCAAAGCCACCGAGTTTGTTTTGAAGGAGAAGAGCAGCGGCAGC
TGCAGCAGCAGCAGCGGTGGCGGCGGCAGCAGCAGCAGCAACAATAACAG
CTAAAATTCAACATTTCCAAGCGTGTATCTAGGGCGACCTCATTGTTTTT
TTATTTGTTGTTTTGGGTCCCTTGGCGATCGAACGATGCGCGATAAGTTT
GTCCACATTTTCTTGCACGTAAAAATATACTTCTATGACCTTAGCGATGT
ATTCTTGTTTCTAGTTGATTGAGTGGTTCCCTGCCTGCCGATTTTCCGAG
GTCAAGAGGAGAAGGGAGAAAACGACGGTGGGGGCAGGTCAGCTTTTCGG
ATTCCTTCAAGTCGATATTTTTGGCACTGTGTACTTGATCTTGCCGTTGT
CTTTTGGTGCAGAGTGAACGAGCCTCTACGACAGATAGCAGTAGAATTAC
TCGTTTTCAGTGTGTTGGAACCGGGTTCCCAGCTGGGAAACGTTTTGGCC
TGGATAGGGCCTATAGGATGAAACCAGGCTCGATCCAGGACGGGGTGGCC
TATAGTGTATGCAAGTAGTTGGCCGGATCGAGCCTGGATCGAGCCTGGTT
GAAAAAGTGTGTTGGATGTTTTATTTCGTTTATACAGGCGGTATGTAGAC
TATCCATGTAGTCTATGAGCAACCAGCATGTATGCACCCATGGTCGATGC
ACCACCGACTGATCCTAGCAGCAATTGGGTACCGACGCAAGCGCGGTACC
TACCGACAGCTTTCCTACGCTCCGGCTCTGAAGCTGGTGGGGTGCCAGAC
CGTGGAAGCCACTGTCCGGCAGCGGCGTCTGCTGTTTGCCGGAGCCTTGG
CAAGACAGCCGGACGGACGCCTCCCCAAACGACTGATATTCGGCGAGTTG
TTGGGGGGGGAGGACCCGGGCGGTGGAAGCCCGGAGCAGAACTGGGGGAA
GTGCCTGAAGGACGACTTTAAGGCGTTCGGGGCCACGCACGGCTCTACGG
CCGAACTACCACGAGTGTTCGGGATTCACAGATCCACATGGCCGACGGCA
GCGAGGGTGGCGGGGGGAGTACCGTGGCATACGGGGGTGCCGCGGGGAGC
TGAGAGGTTTATGGCCTCGTGGCACAAGGCGGAGGAGGAGGCTAGCCGAC
AGCGGACGATCGAACGAGATAACAAAGGACCCAACAACAGAAAAAACACG
GCAACAACCAACAGGGGAACGAGGCCGGAAAATATCGGAACTGCACGCGA
CGTGCGCAGGAGGGCGGAGGCGGACGCAGTAGCGCGACATGTTGCGGATT
GAATATTGGCCCCCACGGCTGTACCATCCTGCGCCACCACCGGGGGAAGT
ATGACTGTTTCTTATCTTGTCTGGGTTCCTTTTTTGCCCTGGTCTTGTTT
CATATCATGTGGGTGGTCAATTTCGGTGGTGAGGACTATTATGTGTTTTT
TGGCCTGACCGGCGAGAACCCGGCACGGAACACCCTGGCATTGTTGGGGT
ACCAAGATAGAACCAGGGGGGCTATGCCCCCATGTGGTGATGTTGGCTCG
TCTAATTTTGTTTTTTAGCTCGCATAGCGTGTGGAGGGGAGCGAGAGGCT
CTACACTATTTGTCTTTGATTTGTCGCTTTGCTGACCATTCGGGTCCATT
TTTTTATTTTAGTAGACTATATATTTTGTTTCGGTATAAGCTATCCTGTG
ACCACGGGAATTGACCGCATCAAGTTTTTGTTTTTAGTATACCTTTTGTT
TAGGTGTAAGTTATCCTGTGGCCACGGGAATTGCCCGCATCAAGTGTTGG
ATTTGTTTGTGGTACTTGGTAAAGATACTGGTTTGGGGGCGATCTATGGG
GGTACACAGTAGTTGGGATGGTAGTATGTCATCGGCATGTCATGTCAGGG
GACTCTTTCTCCTCCGTGGCACTGTCATGACTCTTTCTCCTCCGTGGCAC
TGTCACTCCTCGTGATGTGACTCTCTCTTCCAACATACGTGAGTCAAGGT
TTACCAGAGACGCCTCCAACAAGGGTCCGCGCGTGCGAACAGAGTCCACG
CACCAACACACTAACACGATGATATCGTGGAGGCCTACAGGCCGTTGGAA
GGAACGAGGTTTGGAGGGTAGGGTGTGAGATTGTATCGGCCGGGTTTCTA
CGGCGAACAAGAACGGGGATTTAGAGCAGGGCTTTTCTGCTGGTTTGTGC
ACAACTGCTGTGGCGAAGATAAGGGCGCCGGCGAGTTACTAATTTATAGA
TCTGGATGTCGGGGGGGCTGAGGTCATTTTGTATTGGTTTTCTCTTGGTT
TTTCTGCGTTTGCCCCGGCCTTGTTTATGCCTCCGGAACTTGGGGGGGCT
GATGGCCGTTTTATATGGGGCTTTCTGTTGGTTTTTCTGCGTTTCCTCTG
GCCTCGTTTATGCCTCTGAAAGTGGGGGGGGCTGATGGCCATTATATATG
GGTTTTCTGTATTCTGCGCTGACCTTGTTTGTGCCCCTGGAAGTTGGGGG
GCTGATGGTTAAAACGCTTGGATTTCCGTTTTTCATGACTTGGTATTTGA
GTATTTGAAATTGCAAGCTTGACAAGAGTTGAGGATTTGGGAATTGATTG
CTTGCGATTTTGTATGTTTTATTTTTGAAAGGTGACAACAGTAGTGATAA
AGTGGAGGTTCCTCTGGCATTTCATCATGCTGGGTTTTTGAACTTTCGCT
ACATTCGCTGTTATGGATGTTTCTGGGTTTTGTATTGGAGGATGGGTTTG
ACATGTGTTGATCGGCAATACTTGAGGCCTTTGCGCTTTCGAATGCTGAG
TCGTGCTGGTCAAGAAGTTAAAATTGCGGGTTTCTCTAAAGATTGTGTTC
TGATTTATTGGGGCGTTAATCCCGGAGTTGTCCGTCATCGCTCTAGATGC
AATTCTGATGTAATGTTGATTTAAGTTGGATATCCTTCCAAGGATAAGTC
TGTGGTTTTGACAGCTTGGGGTTTTCCCCAAGAGGGGTATATACTTTGAC
TCTTAGTTTGCATGTGAGGAGGAATGATATATCAGACGTTTTGGAAGTTC
AATGGAGTTTAGAATCGTGCAAGTTGAGAGATGCTATTTTGGGCTTTTAG
AGAATGGATGGTAAGCGGGTTTGTTTGTAGGGACTTTTGATTCGTTACCG
TTTTGTATGACGGTATGGGAATAGTTCTGCGTGAACAGTATCTTGTACCA
AGCAGGGGGGCTGTTTGTGGTACTTGGTAAAGATACTGGTTTGGGGGCGA
TCTATGGGGGTACACAGTTGGGATGGTAGTATGTCATCGGCATGTCACGG
GGACTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6504:508..7113+

>mRNA_L-elsbetiae_contig6504.15192.1 ID=mRNA_L-elsbetiae_contig6504.15192.1|Name=mRNA_L-elsbetiae_contig6504.15192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1380bp|location=Sequence derived from alignment at L-elsbetiae_contig6504:508..7113+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGTCGCCACCATCCCGGCCAAAATTGGGTGCAAGCTCGGCGCGAA
CTGGGTTAATCGGTCGCGTAACTCGAGATGCAGGTCGCCACCATCCCGGC
CAAAATTGGGTGCAAGCTCGGCGCGAACTGGGTTAATCGGTCGCGTAACT
CGAGCCGGGAGGTCGTTTCTCAGGGGGAGGATGATTTTGAGCCGGGAGGT
CGTTTCTCAGGGGGAGGATGATTTTGAGGGCGTGATCACGGAGGAGATGA
TGCAGACTGAGAGAACGTATCAGATCTTCTCTACGGACGGGAAGCGCCTC
TTGCAGGCCAGCGATGCCAAGTCCAGCCGCTGCCTCAAGGGCGTGATCAC
GGAGGAGATGATGCAGACTGAGAGAACGTATCAGATCTTCTCTACGGACG
GGAAGCGCCTCTTGCAGGCCAGCGATGCCAAGTCCAGCCGCTGCCTCAAG
CTTTTCGGCTACACCTGGGGGGGATATTCTCTCACATTCGGAGGCCCACC
CCTGCCCCCGTCGTCGGCGGAGACTCAAGAAGAACAAGGAGAACGAGAAC
GTTCCTCGTCCTTCTCCTTCTCAGGTTGCCCGGGCGCCTATCGCCTGCAC
AGCGGCATGCACGGTGACAATACACTGTTCTTCCTGGGGGCTTGCTACCC
GACGGAGTGGGTAGTCTGGGACGTCGGGGGGAAGACGAGCGGGGCGTGGG
AGAAGCTGGAGTTGAGGTGGCGGGAGGGCGGGAAGAAGTTCACGATCTCG
GGGCACGGGGGGCAGCACGTCAAGTGGAAGCAATCCGAGGGCGTCTTCAA
GGGGACCCGGACTGAAAGCAAAGCCACCGAGTTTGTTTTGAAGGAGAAGA
GCAGCGGCAGCTGCAGCAGCAGCAGCGGTGGCGGCGGCAGCAGCAGCAGC
AACAATAACAGCTAACTTTTCGGCTACACCTGGGGGGGATATTCTCTCAC
ATTCGGAGGCCCACCCCTGCCCCCGTCGTCGGCGGAGACTCAAGAAGAAC
AAGGAGAACGAGAACGTTCCTCGTCCTTCTCCTTCTCAGGTTGCCCGGGC
GCCTATCGCCTGCACAGCGGCATGCACGGTGACAATACACTGTTCTTCCT
GGGGGCTTGCTACCCGACGGAGTGGGTAGTCTGGGACGTCGGGGGGAAGA
CGAGCGGGGCGTGGGAGAAGCTGGAGTTGAGGTGGCGGGAGGGCGGGAAG
AAGTTCACGATCTCGGGGCACGGGGGGCAGCACGTCAAGTGGAAGCAATC
CGAGGGCGTCTTCAAGGGGACCCGGACTGAAAGCAAAGCCACCGAGTTTG
TTTTGAAGGAGAAGAGCAGCGGCAGCTGCAGCAGCAGCAGCGGTGGCGGC
GGCAGCAGCAGCAGCAACAATAACAGCTAA
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