mRNA_L-elsbetiae_contig6479.15156.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6479.15156.1
Unique NamemRNA_L-elsbetiae_contig6479.15156.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6479.15156.1 vs. uniprot
Match: D7G401_ECTSI (RME1, RME-1/EHD family ATPase with a C-terminal EH domain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G401_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.370e-22
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 IWDLSDMDNDGMLDLEEFTVAIHLCDRTKAGEPLPDALPRHIVPPSKASLV 153
            IWDLSDMDNDGMLDLEEFTVA+HLCDRTKAGEPLPD LPR++VPPSKASL+
Sbjct:  536 IWDLSDMDNDGMLDLEEFTVAMHLCDRTKAGEPLPDGLPRNMVPPSKASLM 586
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BLAST of mRNA_L-elsbetiae_contig6479.15156.1 vs. uniprot
Match: A0A835YYV9_9STRA (RME1, RME-1/EHD family ATPase with a C-terminal EH domain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYV9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.540e-13
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 IWDLSDMDNDGMLDLEEFTVAIHLCDRTKAGEPLPDALPRHIVPPSKASLVL 156
            IWDLSDMD DG LDL E+TVA+HLC   KAG+P+P ALP  +VPP K  LV+
Sbjct:  546 IWDLSDMDKDGALDLAEYTVAMHLCAAAKAGDPVPAALPAELVPPDKRHLVM 597
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BLAST of mRNA_L-elsbetiae_contig6479.15156.1 vs. uniprot
Match: F2U503_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U503_SALR5)

HSP 1 Score: 70.1 bits (170), Expect = 3.000e-13
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 IWDLSDMDNDGMLDLEEFTVAIHLCDRTKAGEPLPDALPRHIVPPSKAS 147
            IW+LSD+D DG LDL+EF VA+HLC +  AGE +PDALPR +VPPSK S
Sbjct:  168 IWNLSDIDGDGYLDLDEFCVAMHLCHKAMAGESVPDALPRLLVPPSKRS 216
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BLAST of mRNA_L-elsbetiae_contig6479.15156.1 vs. uniprot
Match: A0A7S2F4E5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4E5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.310e-12
Identity = 28/52 (53.85%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 IWDLSDMDNDGMLDLEEFTVAIHLCDRTKAGEPLPDALPRHIVPPSKASLVL 156
            IW+LSD+D DG LD++EF VA++LC + + G+P+P ALP  +VPPSK S ++
Sbjct:  177 IWELSDIDKDGQLDMDEFAVAMYLCRQAQRGQPMPQALPSQVVPPSKKSYIV 228
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BLAST of mRNA_L-elsbetiae_contig6479.15156.1 vs. uniprot
Match: A0A074ZS92_9TREM (Uncharacterized protein n=1 Tax=Opisthorchis viverrini TaxID=6198 RepID=A0A074ZS92_9TREM)

HSP 1 Score: 66.2 bits (160), Expect = 2.290e-11
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 IWDLSDMDNDGMLDLEEFTVAIHLCDRTKAGEPLPDALPRHIVPPSK 141
            IWD+SD+DNDG LD EEF +A+HL DR   G+ LPD+LP+H++PP K
Sbjct:  174 IWDMSDIDNDGNLDKEEFVLAMHLIDRCVDGDMLPDSLPQHLIPPGK 220
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BLAST of mRNA_L-elsbetiae_contig6479.15156.1 vs. uniprot
Match: A0A3R7FT67_CLOSI (Epidermal growth factor receptor substrate 15-like 1 n=3 Tax=Opisthorchiidae TaxID=6196 RepID=A0A3R7FT67_CLOSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.290e-11
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 IWDLSDMDNDGMLDLEEFTVAIHLCDRTKAGEPLPDALPRHIVPPSK 141
            IWD+SD+DNDG LD EEF +A+HL DR   G+ LPD+LP+H++PP K
Sbjct:  175 IWDMSDIDNDGNLDKEEFVLAMHLIDRCVDGDMLPDSLPQHLIPPGK 221
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BLAST of mRNA_L-elsbetiae_contig6479.15156.1 vs. uniprot
Match: A0A3P9DE62_9CICH (Epidermal growth factor receptor pathway substrate 15 like 1 n=2 Tax=Haplochromini TaxID=319058 RepID=A0A3P9DE62_9CICH)

HSP 1 Score: 63.9 bits (154), Expect = 1.480e-10
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 IWDLSDMDNDGMLDLEEFTVAIHLCDRTKAGEPLPDALPRHIVPPSK 141
            IWDLSD+D DG LD EEFTVA+HL  RT   EPLP +LP  ++PPSK
Sbjct:   13 IWDLSDVDKDGHLDKEEFTVALHLVYRTMEKEPLPTSLPASLIPPSK 59
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BLAST of mRNA_L-elsbetiae_contig6479.15156.1 vs. uniprot
Match: A0A3Q2WQL3_HAPBU (Epidermal growth factor receptor pathway substrate 15 like 1 n=2 Tax=Haplochromini TaxID=319058 RepID=A0A3Q2WQL3_HAPBU)

HSP 1 Score: 63.9 bits (154), Expect = 1.490e-10
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 IWDLSDMDNDGMLDLEEFTVAIHLCDRTKAGEPLPDALPRHIVPPSK 141
            IWDLSD+D DG LD EEFTVA+HL  RT   EPLP +LP  ++PPSK
Sbjct:  126 IWDLSDVDKDGHLDKEEFTVALHLVYRTMEKEPLPTSLPASLIPPSK 172
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BLAST of mRNA_L-elsbetiae_contig6479.15156.1 vs. uniprot
Match: A0A3Q4H3D7_NEOBR (Epidermal growth factor receptor substrate 15-like 1-like n=2 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4H3D7_NEOBR)

HSP 1 Score: 63.5 bits (153), Expect = 2.030e-10
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 IWDLSDMDNDGMLDLEEFTVAIHLCDRTKAGEPLPDALPRHIVPPSK 141
            IWDLSD+D DG LD EEFTVA+HL  RT   EPLP +LP  ++PPSK
Sbjct:  170 IWDLSDVDKDGHLDKEEFTVAMHLVYRTMEKEPLPTSLPASLIPPSK 216
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BLAST of mRNA_L-elsbetiae_contig6479.15156.1 vs. uniprot
Match: A0A668SAK1_OREAU (Uncharacterized protein n=1 Tax=Oreochromis aureus TaxID=47969 RepID=A0A668SAK1_OREAU)

HSP 1 Score: 63.5 bits (153), Expect = 2.030e-10
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 IWDLSDMDNDGMLDLEEFTVAIHLCDRTKAGEPLPDALPRHIVPPSK 141
            IWDLSD+D DG LD EEFTVA+HL  RT   EPLP +LP  ++PPSK
Sbjct:  166 IWDLSDVDKDGHLDKEEFTVAMHLVYRTMEKEPLPTSLPTSLIPPSK 212
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6479.15156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G401_ECTSI2.370e-2290.20RME1, RME-1/EHD family ATPase with a C-terminal EH... [more]
A0A835YYV9_9STRA1.540e-1365.38RME1, RME-1/EHD family ATPase with a C-terminal EH... [more]
F2U503_SALR53.000e-1367.35Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A7S2F4E5_9STRA6.310e-1253.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A074ZS92_9TREM2.290e-1161.70Uncharacterized protein n=1 Tax=Opisthorchis viver... [more]
A0A3R7FT67_CLOSI2.290e-1161.70Epidermal growth factor receptor substrate 15-like... [more]
A0A3P9DE62_9CICH1.480e-1065.96Epidermal growth factor receptor pathway substrate... [more]
A0A3Q2WQL3_HAPBU1.490e-1065.96Epidermal growth factor receptor pathway substrate... [more]
A0A3Q4H3D7_NEOBR2.030e-1065.96Epidermal growth factor receptor substrate 15-like... [more]
A0A668SAK1_OREAU2.030e-1065.96Uncharacterized protein n=1 Tax=Oreochromis aureus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6479contigL-elsbetiae_contig6479:724..882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog2880.D7G401
KEGG koko:K12483
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.endocytic recycling
EggNOG OGsKOG1954@1,KOG1954@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Exons1
Model size159
Cds size141
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.9168825-UTR-L-elsbetiae_contig6479:723..7411622816714.9168825-UTR-L-elsbetiae_contig6479:723..741Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6479 724..741 +
1691683760.3205602-UTR-L-elsbetiae_contig6479:723..7411691683760.3205602-UTR-L-elsbetiae_contig6479:723..741Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6479 724..741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.9350505-CDS-L-elsbetiae_contig6479:741..8821622816714.9350505-CDS-L-elsbetiae_contig6479:741..882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6479 742..882 +
1691683760.3323085-CDS-L-elsbetiae_contig6479:741..8821691683760.3323085-CDS-L-elsbetiae_contig6479:741..882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6479 742..882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6479.15156.1prot_L-elsbetiae_contig6479.15156.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6479 742..882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6479.15156.1

>prot_L-elsbetiae_contig6479.15156.1 ID=prot_L-elsbetiae_contig6479.15156.1|Name=mRNA_L-elsbetiae_contig6479.15156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=47bp
MDNDGMLDLEEFTVAIHLCDRTKAGEPLPDALPRHIVPPSKASLVL*
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mRNA from alignment at L-elsbetiae_contig6479:724..882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6479.15156.1 ID=mRNA_L-elsbetiae_contig6479.15156.1|Name=mRNA_L-elsbetiae_contig6479.15156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=159bp|location=Sequence derived from alignment at L-elsbetiae_contig6479:724..882+ (Laminarionema elsbetiae ELsaHSoW15)
ATTTGGGACTTGTCCGACATGGACAACGACGGTATGCTGGACCTGGAGGA
ATTCACGGTGGCCATACACCTGTGCGATAGGACCAAGGCCGGAGAGCCTC
TGCCGGACGCCCTACCGCGCCACATCGTGCCGCCCTCCAAGGCGTCGTTA
GTGCTCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6479:724..882+

>mRNA_L-elsbetiae_contig6479.15156.1 ID=mRNA_L-elsbetiae_contig6479.15156.1|Name=mRNA_L-elsbetiae_contig6479.15156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig6479:724..882+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAACGACGGTATGCTGGACCTGGAGGAATTCACGGTGGCCATACA
CCTGTGCGATAGGACCAAGGCCGGAGAGCCTCTGCCGGACGCCCTACCGC
GCCACATCGTGCCGCCCTCCAAGGCGTCGTTAGTGCTCTAGATGGACAAC
GACGGTATGCTGGACCTGGAGGAATTCACGGTGGCCATACACCTGTGCGA
TAGGACCAAGGCCGGAGAGCCTCTGCCGGACGCCCTACCGCGCCACATCG
TGCCGCCCTCCAAGGCGTCGTTAGTGCTCTAG
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