mRNA_L-elsbetiae_contig6470.15150.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6470.15150.1
Unique NamemRNA_L-elsbetiae_contig6470.15150.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6470.15150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6470contigL-elsbetiae_contig6470:7222..8692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size645
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6470.15150.1prot_L-elsbetiae_contig6470.15150.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6470 7231..7749 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.5178726-UTR-L-elsbetiae_contig6470:7221..72301622816714.5178726-UTR-L-elsbetiae_contig6470:7221..7230Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6470 7222..7230 -
1691683760.0488305-UTR-L-elsbetiae_contig6470:7221..72301691683760.0488305-UTR-L-elsbetiae_contig6470:7221..7230Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6470 7222..7230 -
1622816714.5376165-UTR-L-elsbetiae_contig6470:7749..77701622816714.5376165-UTR-L-elsbetiae_contig6470:7749..7770Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6470 7750..7770 -
1691683760.0676336-UTR-L-elsbetiae_contig6470:7749..77701691683760.0676336-UTR-L-elsbetiae_contig6470:7749..7770Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6470 7750..7770 -
1622816714.5482848-UTR-L-elsbetiae_contig6470:8596..86921622816714.5482848-UTR-L-elsbetiae_contig6470:8596..8692Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6470 8597..8692 -
1691683760.0757468-UTR-L-elsbetiae_contig6470:8596..86921691683760.0757468-UTR-L-elsbetiae_contig6470:8596..8692Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6470 8597..8692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.527289-CDS-L-elsbetiae_contig6470:7230..77491622816714.527289-CDS-L-elsbetiae_contig6470:7230..7749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6470 7231..7749 -
1691683760.0600896-CDS-L-elsbetiae_contig6470:7230..77491691683760.0600896-CDS-L-elsbetiae_contig6470:7230..7749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6470 7231..7749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6470.15150.1

>prot_L-elsbetiae_contig6470.15150.1 ID=prot_L-elsbetiae_contig6470.15150.1|Name=mRNA_L-elsbetiae_contig6470.15150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MVNQAQDILGSSLCVTTVFVSHSSKRRDLTGLTHGTSYVAHTLAMKTSNS
EPPRDDIGIRVGSRRSVGSRFSSSCTPPSSPTLARIQACVEFTACGRFFA
SSLIFFVLSFGEATASDWLRGRWLLHVVAASFPRGLGMFGSHELVATIVS
CKKSRTMSTSVYSLEASLKHVD*
back to top

mRNA from alignment at L-elsbetiae_contig6470:7222..8692-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6470.15150.1 ID=mRNA_L-elsbetiae_contig6470.15150.1|Name=mRNA_L-elsbetiae_contig6470.15150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1471bp|location=Sequence derived from alignment at L-elsbetiae_contig6470:7222..8692- (Laminarionema elsbetiae ELsaHSoW15)
GCAGCCAGCGAGGCAGCCAACACGAGGCCGGGGTCAAGTGTCGCAATCAA
GCCTGAACACTAGTAGCCATGTCTGATGCAGAGGTCAAACCTACAGGTGA
GCAACGAGCTGCTTGTAACCGTTGCGGCCGACGGCATACTCTGAATCGTC
AAGGATCGTAGCCGTATGGGATTGCGTGGTTTTGCGTTTGACTGCTGCGC
TGTCGGCAAGGAGTAGAGTATGGTGGTAGAGCACACCAGGTTGCAGCAGT
TGATTTATTCTTCAGCTACATACCTCTGTTGTGTAAAGTTGTCATCTTTG
TCATGCCCACCAGCTCTTCGCCACCTACCTATTCGACTCTGATCCCATTT
GATAGAGGTTGCATTGGCTAACCTCAAGTTCCAACTTGATTCTGAACGGG
CACAGTTGGATCCATGTGTGGTTCATCCAGGGAAGCAAACGATCTGAACG
TCACCGCGGCGGTTGCGATTCCTGAAACCTTGCTGTGGTGTCTATTTTCG
AAACGTCCACCTCGGCCGCCGCCGGTGCTGTGGCGCTGCCGTCAAAGCCT
TGCTTGGCTTGATAACTTTCCACCCACGAATGACTGCTACACTCTCAAAA
CGCCGCATGGTACAATATGCATGTCGGTCCTTTTGATACCGTACCTGACT
GCCGACCGGGTCTGGTGTCTTCGCAAACGTGGTGGGAACCGCAGCATACC
CCCATGAAGTACGTTAGACTGCTCTCAATATTTCGTACTCCTATGTTGTT
TACGAGTCTGCATCGGGAGTATTGATAGTGAACCTCTTCGTCTTCGTCAA
CTCCCAGGGCCCACCACAAAACGGATAGCTCCTGTCGGCACCCTGTTTCT
CAGAACATCCCGCACCATGCATGTCTCCCCGTCTCCCCCCCCTTCGCATC
TCTCCGCATGGACCGCATGTAGGTGGCGGCCAGGTGAAAGCGTATGGTCA
ACCAGGCACAGGACATCCTAGGGAGCTCGCTTTGTGTCACAACGGTGTTT
GTCAGCCACAGCAGCAAACGCCGGGACTTGACTGGGCTGACACACGGAAC
GTCATACGTTGCGCATACTCTAGCGATGAAAACAAGCAACAGCGAGCCCC
CACGCGATGATATTGGGATTCGTGTGGGTTCAAGGCGGTCAGTGGGAAGC
AGGTTCTCTTCTAGTTGCACACCACCGAGCTCCCCCACCTTAGCAAGGAT
CCAGGCTTGCGTTGAGTTCACCGCGTGTGGCCGTTTTTTTGCCTCGAGTT
TGATTTTTTTTGTCTTGTCTTTCGGCGAGGCAACTGCTTCTGATTGGTTG
CGTGGTCGGTGGTTGCTTCACGTAGTTGCTGCATCATTCCCACGAGGGCT
TGGGATGTTCGGGAGTCATGAGTTGGTGGCGACAATCGTTTCTTGTAAAA
AATCCCGTACGATGTCTACTTCCGTTTATTCTCTCGAGGCCTCGCTCAAA
CATGTCGATTGATAGACGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6470:7222..8692-

>mRNA_L-elsbetiae_contig6470.15150.1 ID=mRNA_L-elsbetiae_contig6470.15150.1|Name=mRNA_L-elsbetiae_contig6470.15150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig6470:7222..8692- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCAACCAGGCACAGGACATCCTAGGGAGCTCGCTTTGTGTCACAAC
GGTGTTTGTCAGCCACAGCAGCAAACGCCGGGACTTGACTGGGCTGACAC
ACGGAACGTCATACGTTGCGCATACTCTAGCGATGAAAACAAGCAACAGC
GAGCCCCCACGCGATGATATTGGGATTCGTGTGGGTTCAAGGCGGTCAGT
GGGAAGCAGGTTCTCTTCTAGTTGCACACCACCGAGCTCCCCCACCTTAG
CAAGGATCCAGGCTTGCGTTGAGTTCACCGCGTGTGGCCGTTTTTTTGCC
TCGAGTTTGATTTTTTTTGTCTTGTCTTTCGGCGAGGCAACTGCTTCTGA
TTGGTTGCGTGGTCGGTGGTTGCTTCACGTAGTTGCTGCATCATTCCCAC
GAGGGCTTGGGATGTTCGGGAGTCATGAGTTGGTGGCGACAATCGTTTCT
TGTAAAAAATCCCGTACGATGTCTACTTCCGTTTATTCTCTCGAGGCCTC
GCTCAAACATGTCGATTGAATGGTCAACCAGGCACAGGACATCCTAGGGA
GCTCGCTTTGTGTCACAACGGTGTTTGTCAGCCACAGCAGCAAACGCCGG
GACTTGACTGGGCTGACACACGGAACGTCATACGTTGCGCATACTCTAGC
GATGAAAACAAGCAACAGCGAGCCCCCACGCGATGATATTGGGATTCGTG
TGGGTTCAAGGCGGTCAGTGGGAAGCAGGTTCTCTTCTAGTTGCACACCA
CCGAGCTCCCCCACCTTAGCAAGGATCCAGGCTTGCGTTGAGTTCACCGC
GTGTGGCCGTTTTTTTGCCTCGAGTTTGATTTTTTTTGTCTTGTCTTTCG
GCGAGGCAACTGCTTCTGATTGGTTGCGTGGTCGGTGGTTGCTTCACGTA
GTTGCTGCATCATTCCCACGAGGGCTTGGGATGTTCGGGAGTCATGAGTT
GGTGGCGACAATCGTTTCTTGTAAAAAATCCCGTACGATGTCTACTTCCG
TTTATTCTCTCGAGGCCTCGCTCAAACATGTCGATTGA
back to top