mRNA_L-elsbetiae_contig6462.15141.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6462.15141.1
Unique NamemRNA_L-elsbetiae_contig6462.15141.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6462.15141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6462contigL-elsbetiae_contig6462:8049..8360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.436597-CDS-L-elsbetiae_contig6462:8048..83601622816713.436597-CDS-L-elsbetiae_contig6462:8048..8360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6462 8049..8360 +
1691683759.2608216-CDS-L-elsbetiae_contig6462:8048..83601691683759.2608216-CDS-L-elsbetiae_contig6462:8048..8360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6462 8049..8360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6462.15141.1prot_L-elsbetiae_contig6462.15141.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6462 8049..8360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6462.15141.1

>prot_L-elsbetiae_contig6462.15141.1 ID=prot_L-elsbetiae_contig6462.15141.1|Name=mRNA_L-elsbetiae_contig6462.15141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MLLFCFRCGWVCWCGAVKRMLCAPLEKGSPSGGSHTTCSLLRPAAGMGKH
RCRADFRLFVISFSTARTPSTRSVLAFVGGAAVGIAFPRAFKKQNKPTRA
QFLP
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mRNA from alignment at L-elsbetiae_contig6462:8049..8360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6462.15141.1 ID=mRNA_L-elsbetiae_contig6462.15141.1|Name=mRNA_L-elsbetiae_contig6462.15141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig6462:8049..8360+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTTTTTTGCTTCCGTTGCGGGTGGGTTTGTTGGTGTGGTGCAGT
AAAAAGGATGCTGTGTGCCCCCCTCGAGAAAGGAAGTCCGAGCGGGGGTT
CTCATACTACTTGTAGTCTGTTACGACCGGCGGCTGGCATGGGCAAGCAT
CGATGCCGGGCGGATTTTCGACTTTTCGTGATTAGTTTTTCCACCGCAAG
AACGCCGTCCACGCGTTCGGTGTTGGCCTTTGTCGGCGGCGCCGCCGTTG
GAATCGCGTTTCCGAGAGCTTTCAAAAAACAAAATAAACCCACGAGGGCC
CAATTTCTTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6462:8049..8360+

>mRNA_L-elsbetiae_contig6462.15141.1 ID=mRNA_L-elsbetiae_contig6462.15141.1|Name=mRNA_L-elsbetiae_contig6462.15141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig6462:8049..8360+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTTTTTTGCTTCCGTTGCGGGTGGGTTTGTTGGTGTGGTGCAGT
AAAAAGGATGCTGTGTGCCCCCCTCGAGAAAGGAAGTCCGAGCGGGGGTT
CTCATACTACTTGTAGTCTGTTACGACCGGCGGCTGGCATGGGCAAGCAT
CGATGCCGGGCGGATTTTCGACTTTTCGTGATTAGTTTTTCCACCGCAAG
AACGCCGTCCACGCGTTCGGTGTTGGCCTTTGTCGGCGGCGCCGCCGTTG
GAATCGCGTTTCCGAGAGCTTTCAAAAAACAAAATAAACCCACGAGGGCC
CAATTTCTTCCGATGCTGCTTTTTTGCTTCCGTTGCGGGTGGGTTTGTTG
GTGTGGTGCAGTAAAAAGGATGCTGTGTGCCCCCCTCGAGAAAGGAAGTC
CGAGCGGGGGTTCTCATACTACTTGTAGTCTGTTACGACCGGCGGCTGGC
ATGGGCAAGCATCGATGCCGGGCGGATTTTCGACTTTTCGTGATTAGTTT
TTCCACCGCAAGAACGCCGTCCACGCGTTCGGTGTTGGCCTTTGTCGGCG
GCGCCGCCGTTGGAATCGCGTTTCCGAGAGCTTTCAAAAAACAAAATAAA
CCCACGAGGGCCCAATTTCTTCCG
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