mRNA_L-elsbetiae_contig6453.15126.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6453.15126.1
Unique NamemRNA_L-elsbetiae_contig6453.15126.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6453.15126.1 vs. uniprot
Match: D7FHQ5_ECTSI (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ5_ECTSI)

HSP 1 Score: 367 bits (943), Expect = 2.680e-123
Identity = 181/192 (94.27%), Postives = 186/192 (96.88%), Query Frame = 1 
Query:    4 LLPKQLPEFAGRKQLVLDLDETLVHSSFKPVVGADFIMDIMVDGTFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDLLDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCISWIDEIDDTELDVIADFLETIVDVPDVRDLLEFWREGAGVLDNAAS 579
            LLPKQLPEFAGRKQL+LDLDETLVHSSFKPV GADFIMDIMVDGTFYKVFVLKRPGVD FLERVAKLYEVIIFTASLPQYANPLLD+LDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCISWID+ +DTELDVIA FLETIVDVPDVRDLLEFWREGA VLDN +S
Sbjct:  291 LLPKQLPEFAGRKQLILDLDETLVHSSFKPVPGADFIMDIMVDGTFYKVFVLKRPGVDAFLERVAKLYEVIIFTASLPQYANPLLDVLDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCISWIDDREDTELDVIASFLETIVDVPDVRDLLEFWREGAAVLDNISS 482
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BLAST of mRNA_L-elsbetiae_contig6453.15126.1 vs. uniprot
Match: A0A836CEE7_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEE7_9STRA)

HSP 1 Score: 295 bits (755), Expect = 6.590e-95
Identity = 149/188 (79.26%), Postives = 163/188 (86.70%), Query Frame = 1 
Query:    4 LLPKQLPEFAGRKQLVLDLDETLVHSSFKPVVGADFIMDIMVDGTFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDLLDPKGTITSRLFREHCTFHEGYFVKDLTLLRH-QSLESTIIVDNSPMAYMFQPENAIDCISWIDEIDDTELDVIADFLETIVDVPDVRDLLEFWREGAGVL 564
            LLP Q  +FAGRK LVLDLDETLVHSSFKPV  +D+I+DIMVD T YKVFVLKRPGVDEFLERV+K YEVIIFTASLPQYANPLLD+LDPKG IT RLFREHCTFHEGYFVKDLTLLR+ ++L  TIIVDNSPMAYMFQP+NAIDC SW+++  D EL VIADFLE   DV DVRD +EFWREGA VL
Sbjct:  288 LLPPQAKQFAGRKLLVLDLDETLVHSSFKPVPTSDYILDIMVDSTAYKVFVLKRPGVDEFLERVSKDYEVIIFTASLPQYANPLLDMLDPKGYITGRLFREHCTFHEGYFVKDLTLLRNNKNLSDTIIVDNSPMAYMFQPDNAIDCTSWLEDPVDEELYVIADFLEKTKDVTDVRDYVEFWREGAEVL 475
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BLAST of mRNA_L-elsbetiae_contig6453.15126.1 vs. uniprot
Match: A0A835YRL6_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL6_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.740e-72
Identity = 144/260 (55.38%), Postives = 160/260 (61.54%), Query Frame = 1 
Query:    4 LLPKQLPEFAGRKQLVLDLDETLVHSSFKPVVGADFIMDIMVDGTFYK----------------------VFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDLLDPKGTITSRLFREHCTFHEGYFVKD----------------------LTLLRHQS-LESTIIVDNSPMAYMFQPENAIDCISWID-------------------------EIDDTELDVIADFLETIVDVPDVRDLLEFWREGAGVLDNA 573
            L PK+   F GRK LVLDLDETLVHSSFKPV  +D+I+DIMVD T YK                      VFVLKRPGVDEFLERV+K YEVIIFTASLPQYANPLLD LDPKG IT+RLFREHCTFHEGYFV                        LTLLR+ + L  TIIVDNSPMAYMFQP+NAIDC SW++                         +  D EL VIA FLE I  VP+VRD +EFWREG+ V+D A
Sbjct:  258 LRPKR---FVGRKLLVLDLDETLVHSSFKPVPKSDYILDIMVDDTPYKLGMRGSRRDRARAAETHGRVGCVFVLKRPGVDEFLERVSKDYEVIIFTASLPQYANPLLDRLDPKGLITARLFREHCTFHEGYFVXXXXXXXXXXXXXXXXXXXXXXXXLTLLRNNTNLSDTIIVDNSPMAYMFQPDNAIDCTSWLELRRALSLRCVRARRSSDVSRAREHEDPMDEELYVIAAFLERIRGVPEVRDYVEFWREGSEVMDPA 514
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BLAST of mRNA_L-elsbetiae_contig6453.15126.1 vs. uniprot
Match: A0A6H5JYB3_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB3_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.320e-70
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 1 
Query:  115 MDIMVDGTFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDLLDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCI 441
            MDIMVD TFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLD+LDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCI
Sbjct:    1 MDIMVDDTFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDMLDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCI 109
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BLAST of mRNA_L-elsbetiae_contig6453.15126.1 vs. uniprot
Match: A0A7S2I1W8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I1W8_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.220e-65
Identity = 106/182 (58.24%), Postives = 134/182 (73.63%), Query Frame = 1 
Query:    4 LLPKQLPEFAGRKQLVLDLDETLVHSSFKPVVGADFIMDIMVDGTFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDLLDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCISWIDEIDDTELDVIADFLETIVDVPDVRDLLEFWRE 549
            LLPK  P+  G+K LVLDLDETLVHSSF+ V GADF++ + ++   + V+V KRPGVD FL  +AK YE+I++TASL +YA+PLLDLLDP   I +RLFRE C ++EG +VKDL+LL  + L   IIVDNSP +Y+F PENAIDC S+ID+  D ELD I  FL  + DV DVRD+   WRE
Sbjct:   55 LLPKHHPDDQGKKCLVLDLDETLVHSSFRAVAGADFVIPVQIEDVVHFVYVAKRPGVDSFLTEMAKHYEIIVYTASLNKYADPLLDLLDPNRVIRTRLFRESCVYYEGNYVKDLSLL-DRDLSQAIIVDNSPNSYIFHPENAIDCSSFIDDPSDRELDQIGAFLAGVKDVDDVRDVCNLWRE 235
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BLAST of mRNA_L-elsbetiae_contig6453.15126.1 vs. uniprot
Match: A0A7S1DE55_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DE55_CYCTE)

HSP 1 Score: 213 bits (543), Expect = 5.610e-64
Identity = 111/192 (57.81%), Postives = 139/192 (72.40%), Query Frame = 1 
Query:    4 LLPKQLPEFAGRKQLVLDLDETLVHSSFKPVVGADFIMDIMVDGTFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDLLDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCISWIDEIDDTELDVIADFLETIVDVPDVRDLLEFWREGAGVLDNAAS 579
            LLP   P   G+K LVLDLDETLVHSSF+ V GADF++ + ++   + V+V KRPGVDEFL  +AK YE++I+TASL +YA+PLLDLLDP   I +RLFRE C +HEG +VKD++LL ++ L  +IIVDNSP +Y+F PENAIDC S+ID+  D ELD I  FL  I DV DVR+L  FWRE   V  N  S
Sbjct:  211 LLPDVHPVDHGKKCLVLDLDETLVHSSFRAVPGADFVIPVQIEDVVHFVYVAKRPGVDEFLVEMAKHYEIVIYTASLNKYADPLLDLLDPCRVIRARLFRESCVYHEGNYVKDMSLL-NRDLSQSIIVDNSPSSYLFHPENAIDCSSFIDDPQDRELDQIGAFLTGIKDVEDVRNLCSFWREWPHVEINIES 401
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BLAST of mRNA_L-elsbetiae_contig6453.15126.1 vs. uniprot
Match: A0A7S2DI05_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DI05_9STRA)

HSP 1 Score: 206 bits (524), Expect = 4.710e-63
Identity = 103/183 (56.28%), Postives = 136/183 (74.32%), Query Frame = 1 
Query:    4 LLPKQLPEFAGRKQLVLDLDETLVHSSFKPVVGADFIMDIMVDGTFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDLLDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCISWIDEIDDTELDVIADFLETIVDVPDVRDLLEFWREG 552
            +LP   P    RK LVLDLDETL+HSSF+ V  A++I+ + ++   + ++VLKRP VDEFL++VA+ +EVII+TASL +YA+PLLD LD +  I  RLFRE CTFH+G +VK+L+LL  + L  TIIVDNSP++YMF P NAI C +W DE++D EL+ I DFL  I DVPDVR  L+ WR+G
Sbjct:   50 VLPPATPANKARKCLVLDLDETLLHSSFRQVGYANYIIPVNIENKVHNIYVLKRPCVDEFLKKVAEHFEVIIYTASLSKYADPLLDQLDTEKVIQHRLFRESCTFHDGMYVKNLSLL-DRDLSQTIIVDNSPVSYMFHPRNAIGCYTWTDEMEDRELEDIGDFLVNIKDVPDVRSHLQHWRKG 231
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BLAST of mRNA_L-elsbetiae_contig6453.15126.1 vs. uniprot
Match: A0A7S3L2U4_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L2U4_9STRA)

HSP 1 Score: 211 bits (538), Expect = 4.850e-63
Identity = 106/182 (58.24%), Postives = 139/182 (76.37%), Query Frame = 1 
Query:    4 LLPKQLPEFAGRKQLVLDLDETLVHSSFKPVVGADFIMDIMVDGTFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDLLDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCISWIDEIDDTELDVIADFLETIVDVPDVRDLLEFWRE 549
            LLP   P+ AG+K LVLDLDETLVHSSF+ V GADFI+ + ++   + V+V+KRPGVDEFL  +AK YE++I+TASL +YA+PLLDLLDP  TI  RLFRE C ++EG ++KD++L+  + L  +IIVDNSP +Y+F PENAIDC S+ID+  D ELD IA FL+ I DV +VR + + WRE
Sbjct:  234 LLPAIHPDDAGKKCLVLDLDETLVHSSFRAVPGADFIIPVQIEDVVHFVYVMKRPGVDEFLVEMAKYYEIVIYTASLNKYADPLLDLLDPHRTIRYRLFRESCVYYEGNYIKDMSLI-DRDLSQSIIVDNSPSSYLFHPENAIDCSSFIDDPRDRELDQIAAFLKGIKDVKEVRGVCQQWRE 414
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BLAST of mRNA_L-elsbetiae_contig6453.15126.1 vs. uniprot
Match: A0A2P4XKU3_9STRA (Nuclear LIM factor interactor-interacting protein cleavage-specific form n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XKU3_9STRA)

HSP 1 Score: 207 bits (527), Expect = 9.470e-63
Identity = 106/180 (58.89%), Postives = 132/180 (73.33%), Query Frame = 1 
Query:    4 LLPKQLPEFAGRKQLVLDLDETLVHSSFKPVVGADFIMDIMVDGTFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDLLDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCISWIDEIDDTELDVIADFLETIVDVPDVRDLLEFW 543
            LLP      A +K LVLDLDETLVHSSF+P   ADFI+ I +DGT + V+V+KRPG +EFL  +AK YE++++TASL +YA+PLLD LDP+GTI  RL+REHC  +EG +VKDL+LL  + L  TIIVDNSP AY F P NAI C S+ID+ +D EL  I+ FL    DV DVRD L+FW
Sbjct:  126 LLPSVSSNDANKKCLVLDLDETLVHSSFRPTDNADFIIPIDIDGTTHHVYVMKRPGAEEFLVEMAKYYEIVVYTASLSKYADPLLDKLDPEGTIRYRLYREHCVQYEGSYVKDLSLL-DRDLSQTIIVDNSPAAYTFHPRNAIGCSSFIDDPNDRELASISRFLTKYHDVEDVRDRLQFW 304
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BLAST of mRNA_L-elsbetiae_contig6453.15126.1 vs. uniprot
Match: A0A1Z5J864_FISSO (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J864_FISSO)

HSP 1 Score: 211 bits (536), Expect = 1.040e-62
Identity = 105/182 (57.69%), Postives = 136/182 (74.73%), Query Frame = 1 
Query:    4 LLPKQLPEFAGRKQLVLDLDETLVHSSFKPVVGADFIMDIMVDGTFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDLLDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCISWIDEIDDTELDVIADFLETIVDVPDVRDLLEFWRE 549
            LLP   P+  G+K LVLDLDETLVHSSF+ V GADF++ + ++   + V+V+KRPGVDEFL  +AK YE++I+TASL +YA+PLLDLLDP+  I +RLFRE C ++EG +VKDL+LL  + L   II+DNSP +Y F PENAIDC S+ID+  D ELD IA FL+ + DV DVR +   WRE
Sbjct:  237 LLPDIHPDDTGKKCLVLDLDETLVHSSFRAVPGADFVIPVQIEDVVHFVYVMKRPGVDEFLVEMAKHYEIVIYTASLNKYADPLLDLLDPERVIRTRLFRESCVYYEGNYVKDLSLL-DRDLSQAIIIDNSPSSYSFHPENAIDCSSFIDDPKDRELDQIAAFLKGVKDVEDVRGVCHLWRE 417
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6453.15126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHQ5_ECTSI2.680e-12394.27FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A836CEE7_9STRA6.590e-9579.26HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A835YRL6_9STRA1.740e-7255.38HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A6H5JYB3_9PHAE1.320e-7098.17FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A7S2I1W8_9STRA1.220e-6558.24Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1DE55_CYCTE5.610e-6457.81Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2DI05_9STRA4.710e-6356.28Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3L2U4_9STRA4.850e-6358.24Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A2P4XKU3_9STRA9.470e-6358.89Nuclear LIM factor interactor-interacting protein ... [more]
A0A1Z5J864_FISSO1.040e-6257.69Carboxy-terminal domain RNA polymerase II polypept... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6453contigL-elsbetiae_contig6453:3758..9548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score299.3
Seed ortholog evalue1.1e-78
Seed eggNOG ortholog2880.D7FHQ5
KEGG koko:K15731,ko:K17616
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008420,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG1605@2759
Ec32 ortholog descriptionDullard phosphatase domain, eukaryotic
Ec32 orthologEc-07_006400.1
EC3.1.3.16
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03021
Exons7
Model size722
Cds size468
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.9786627-UTR-L-elsbetiae_contig6453:3757..38021622816711.9786627-UTR-L-elsbetiae_contig6453:3757..3802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6453 3758..3802 +
1691683758.2550192-UTR-L-elsbetiae_contig6453:3757..38021691683758.2550192-UTR-L-elsbetiae_contig6453:3757..3802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6453 3758..3802 +
1622816711.991822-UTR-L-elsbetiae_contig6453:4623..46921622816711.991822-UTR-L-elsbetiae_contig6453:4623..4692Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6453 4624..4692 +
1691683758.2712088-UTR-L-elsbetiae_contig6453:4623..46921691683758.2712088-UTR-L-elsbetiae_contig6453:4623..4692Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6453 4624..4692 +
1622816712.1005201-UTR-L-elsbetiae_contig6453:9408..95481622816712.1005201-UTR-L-elsbetiae_contig6453:9408..9548Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6453 9409..9548 +
1691683758.3430774-UTR-L-elsbetiae_contig6453:9408..95481691683758.3430774-UTR-L-elsbetiae_contig6453:9408..9548Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6453 9409..9548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.0081549-CDS-L-elsbetiae_contig6453:4692..47251622816712.0081549-CDS-L-elsbetiae_contig6453:4692..4725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6453 4693..4725 +
1691683758.279909-CDS-L-elsbetiae_contig6453:4692..47251691683758.279909-CDS-L-elsbetiae_contig6453:4692..4725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6453 4693..4725 +
1622816712.0289874-CDS-L-elsbetiae_contig6453:5420..55371622816712.0289874-CDS-L-elsbetiae_contig6453:5420..5537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6453 5421..5537 +
1691683758.2883983-CDS-L-elsbetiae_contig6453:5420..55371691683758.2883983-CDS-L-elsbetiae_contig6453:5420..5537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6453 5421..5537 +
1622816712.04436-CDS-L-elsbetiae_contig6453:6070..61451622816712.04436-CDS-L-elsbetiae_contig6453:6070..6145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6453 6071..6145 +
1691683758.2969422-CDS-L-elsbetiae_contig6453:6070..61451691683758.2969422-CDS-L-elsbetiae_contig6453:6070..6145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6453 6071..6145 +
1622816712.0597408-CDS-L-elsbetiae_contig6453:6862..69661622816712.0597408-CDS-L-elsbetiae_contig6453:6862..6966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6453 6863..6966 +
1691683758.3066494-CDS-L-elsbetiae_contig6453:6862..69661691683758.3066494-CDS-L-elsbetiae_contig6453:6862..6966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6453 6863..6966 +
1622816712.075315-CDS-L-elsbetiae_contig6453:7842..79151622816712.075315-CDS-L-elsbetiae_contig6453:7842..7915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6453 7843..7915 +
1691683758.318466-CDS-L-elsbetiae_contig6453:7842..79151691683758.318466-CDS-L-elsbetiae_contig6453:7842..7915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6453 7843..7915 +
1622816712.0889263-CDS-L-elsbetiae_contig6453:9342..94081622816712.0889263-CDS-L-elsbetiae_contig6453:9342..9408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6453 9343..9408 +
1691683758.3305235-CDS-L-elsbetiae_contig6453:9342..94081691683758.3305235-CDS-L-elsbetiae_contig6453:9342..9408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6453 9343..9408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6453.15126.1prot_L-elsbetiae_contig6453.15126.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6453 4693..9408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6453.15126.1

>prot_L-elsbetiae_contig6453.15126.1 ID=prot_L-elsbetiae_contig6453.15126.1|Name=mRNA_L-elsbetiae_contig6453.15126.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
MDIMVDGTFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDL
LDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMF
QPENAIDCISWIDEIDDTELDVIADFLETIVDVPDVRDLLEFWREGAGVL
DNAAS*
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mRNA from alignment at L-elsbetiae_contig6453:3758..9548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6453.15126.1 ID=mRNA_L-elsbetiae_contig6453.15126.1|Name=mRNA_L-elsbetiae_contig6453.15126.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5791bp|location=Sequence derived from alignment at L-elsbetiae_contig6453:3758..9548+ (Laminarionema elsbetiae ELsaHSoW15)
CCACTGCTTCCCAAGCAGCTTCCTGAGTTCGCAGGCCGCAAGCAGGTCAG
CCACGTGTGTGTGTGTCTGCAGTTTTTACCGTAGCCTTTGCTGGGCGGAA
CAAGGGGCTTGGGGGTATATCATGCCACAACAGCAGTGCACGAATAACCC
ACCTAAACCTCAGCGAGCTCTCCTCGAACCGCACAATGTTTTCGTCGACG
GGGGATATCCTTGGAAATCGCGTGGGTCTCGAGTGGTCTGAGGTTTGCTG
TCAAGCATATACATTTTCTCGGGGGTATTTAAGCTCTCGTGTTATGATGT
TTCCCCTCGACTCTGAATATAGATTGGCACCCCTTCTTCTGGATCGGGAT
GAAACGTCGTGGGTTAGTGCACTGTTTAGTATTTCGCTGCGGTTTGCTGC
TGTTTGTTCTTGTTGTTTTTTTGCTGTTGCTTCCTTCCCGTCCGTCTACG
GTGTCGTCCATCAAATCCTGCTACAGAGTACCGTAGATGACGCAAGATAT
CACCCCCTGGACAGATTTTCAACGCTCGATTACTCCATAACGAAGAGGTT
GCCAGCACCAAACGAAACATTTTCGGACAGCCCTCGCCAAGATCATTCCG
AGATGCCATCTTCTTCCGGCACTGGCGCTCTTCTTCCTGGGGAGGAATCG
AGCTTTGAAACCTGTCCAGGGGGGGTGGTATCTTGTGTCACCGACGGTAG
ACCATGCCTGTTCTCCAGGGAAGCGAGCGACAGCAGTAATTTCACTGCTG
AAAAAGAGAACACCATAGTATTTGAAGGTATTTAGAGGTCAGTCTGTCCG
AGGGTTTGGTTGAGATTTTTCTTCGATTTTCTTCCTGTTTTCTGCTCTTT
CCTTTTTTCGCCACAGCTAGTCCTGGACCTGGATGAAACCCTGGTCCATT
CGTCGTTCAAGCCCGTGGTCGGGGCGGATTTTATCATGGACATCATGGTG
GACGGCACCTTCTACAAGGTCAGAGCTGCGAGCGCTGATGACGCCACGCT
GCAGGGGACTTGATGTTTTGATGTTGGCCTTAACTTAAGTACATACATAC
GTGGCGGCACACCCAGAATGTCTGGGAGGACGAGCAGAGGGGTTGCGCAT
GTCGCAGGGCAGGGGGGGTATCGTACGGAACGAGGTAAAAACATTTATGT
ATTACATGCATGATAAAACAGAAAACATTCCGAAAAATATACTAGTACCT
TGAAGGGGGTTGCGTTGACTTCTACTGGTCGAGGTCGGCGCTTGGAACAG
AAGTTGCGGTGGACAGACCCCCCTCCCACTGAAAGGTTCCAAGGGAGAGG
GATGAGAGATCATTTGCTCAGGTATATTGTTGTAGCTTTCAGTCGTTGTG
TTTTTGAGGGCGGGCTCTTTTCGAAGCCCAGAGGCCCTCCGGGAGCCTTG
TGCTTGCTTTGTGGAGGGTGGAGGCTTTCGCTCGATGTGGTCACGGGACG
CCCTATAAAGACAGCTGCAGTAGCCAGCTAGCGCTGGAAAGAGTTCGGCT
TGTCTGGGGTCATGACTCGCGGAATAACGTTTCCCGGTAGCACCATTTTC
ATAGTCAGTCGGTCATCGACACCACCCGCCCTCTTGTTTTAAGAGCGACG
GCTCTACAGTCTCATCATCCAAGTCTTTCTTGAAACAATGATTGACTGGG
GGTGGAACCACAGGTATTCGTGCTGAAGCGGCCCGGCGTGGACGAGTTCC
TGGAGCGCGTGGCGAAGCTGTACGAGGTGATCATCTTCACGGCAAGCCTT
CCCCAGTACGCGAACCCCCTCCTTGATCTGGTGAGTCGAAACAGAGCTAA
ACGATGAGACGAGGGACGCGTAGCAGACGGAAAAACAGTACTTCCAAGCG
TTAATCTTATGCATGTATGTTCGTACCGGCCCTGCTAGTGAAGCTGAGGA
CGGGTCGATTGGAAGCATTTCGTGGCTGTTTTCGTTTCGGGGTGCGGGGC
TTTTCCTCGTTGGAATCGATGGTATCATGTGCCTTCTTATTTCGATTGAA
ATATAATACGTGTACCCCTGACAACAAAACCTGGGGGCGGAAAGGTTGGC
AAGAAAGCGGCTACAATAGTGACTTGGATTATCTGTCTAAAAGCATGTAA
CTATGTAGCGCTTGTTGCCCTTATCTTGGGCAGAAGGTAGGAAGTGGCGT
CTTTGCGACCCTTCTGTACGTACCAGTATCCATACGGAAATAGAATACGT
GTGCCATGCTCCCTCTCCTATTATTGCGAACGGCAGTTTCGTCGGCTTTG
TTGATATTCCGTCGATCCACCCATTAATCCACCCGTTCCGGGTGTCCATT
GCACTTATTTCAGCTGGACCCGAAGGGCACGATCACGTCGCGGCTGTTCC
GAGAGCACTGCACCTTCCACGAGGGCTACTTCGTGAAGGTATGTAGAATT
CGTCGAGGTACGACAGCGGTGGTAAGACAAGAGGTACACGATTAGTGGCG
CTTTGTAACAGACACAATGCAATCGTGCACACGAGGTGCATCAAGCAAGA
GGCGTGTACGTTCATGTGCGTGTATGTATACGTATGCACTTTTGTTCAAC
AAGTTTAAAGCGTGCGAAGAGTTCCGGGGGGGGGATAATATGGATCTTTT
TTCTTTCTCGCCTATTTTTTTTTTGTGTGTCTTCACATTCACAACCGCTC
CGATCTTTCTATGAATCCAGTAACTCAATGAGTCCGTACCATTCCAACAC
TGATGCGGTCGATTCCCGTGGTCACAGGATAGCTTACCCTAAAAAGGGTA
TATATATGTAGCCTACTGAAAAAATGGAAAACATAAAATGGACTCAAAGG
GTTCGCAAAGCACGAAAAAACAAAAATCCCATCTCAATGTGGGTGAGGTT
TCGTTTTTATTATCTATCTGATTTATCTATTGTACCTTTCAAAAGGATCA
GTCTGCACGCGGTGTGAGGTAGAAACAAGACTGGAAACGCCAACATCACC
AACCGCTGGGGATGCACCCCCTGGTTCTATCCTGGTACCCCAACAATGCC
GGGGTGTTCCGTGCCTAGACGGACGTGTCATGACAATACACTGCGTTGCC
ATATGATATTCATATCAAAGCCTCTTCTTACTTCGCCTGGCTGATCCGAG
AGCAGGACCTGACCCTGCTACGCCACCAGTCACTGGAATCCACCATCATC
GTGGACAACTCCCCCATGGCCTACATGTTCCAGCCAGAGAACGCCATTGA
TTGCATCAGGCAAGTCACACACGTTCTCCACATTGACTGTGTATGTATGT
ATGTTGGCTTCACATTAAAAACCGTTCCGATCTCTCCATCCAGTACCTCT
CAATAACCGTACTAGTCCAACACTTGATGTGGTCAATTCCCGTGGTCACA
GGCTAACTTATACCCAAGAAAAGGTACACGAAAAATAAAATGGACCCGAA
GGGCCAGCAAAGCAATAACAAAACAGATATCGAATCTGGAACCCTTCGCT
CCCTTCTACACGCTATGTGAGGTAAACACAAAACTGGAACAGCCAACACC
ACTATCTTGGTACCCCAACAAAGCCGGGGGGTTCCGCGCCGGGTTCTCGC
CGGCCAGGCCCGCACAGGTCTACATAGTCCTCCCCTCGATTATACCGCCC
ACCAACAGGGGATACAAAAAATCAAATATAATCAAATCAAATACCCTCGG
ACAGGACACGACGCAGGTCGAGAATACAAACAAGCAAACGAACACCAAAC
AAACAAACACAACATTACCCCTGACAAAACAAGTCGCTCCTCCGACTACA
TAGGAGAACTTGTTTTGTAGGTTCGTATGATGTCTTACACATATGAGGTA
CATAGATACTCCATGGCTTTTCAAGATGATTTGTAGTTTGGGGACGATTT
GTGTTGGGAATACTTACAATAAACGTCCGTTTCTCTCTCTCTCCCTCTTC
CTCTTTTACTCAATCAACCAGTTATGAAAGTGCATAGGTCGGAGAGGGGA
GAACCTCTAAACAAACCACCCCCTTTGCTGAAAGCTGGTCTGTTTGCCCG
CTGTCAACACAGCACAAAAATAGTGCTAAAAATACTGTGCGCTGCTGCGT
TGAAATCGAACATGTCGGATCACCCAACCGATCAGCTGGATCGACGAGAT
AGACGACACGGAGCTAGACGTTATCGCCGACTTCCTAGAAACCATCGTCG
ACGTTCCGGTGAGTTTGTACACTACTACGCCGTCTGAGGTCTGTATTTAT
AGTCCATTGCACAATATTAGCGAACTCGGTTCTATTCGCTTTGCTATACA
TACCTAGGTTTGAATGTGATCGGCAGGGCGGCGGGGTTTGCTCCAGAAAA
GCGAGAGATAGGGGCGCGGGGGGGTTGCTTGTTTCTTTTACCATCACGGG
CATGTTTCATGTTGCGGGTTGCGTACGTTCGGTGATGGTACAACAATAAT
AGTGCGAGGGCTTGAGGGCTGCCGGTTTCCGTTGGCGTCGTCAGACTAAG
GTACTCTGTAGCTGCTTCTTCTCTTGCAGATCGCCGCTTGACCACGACAC
AACGCCGTGAGCCATCCTCGCGCACCTAAAGCCCGGAATAGCAGTCGTTG
TGCTCGAGTGACGGGCTTTTCCCGGACCACCGTAAAAGTGTGGGCTATCG
CACAATGTGCGATCAACGTTTTTAATCATTTCAAACTGGCTTTATTTATC
GCACAGGCCGGGGCTATCGTACAGGGGTGCGATAGCCCTGAACCCTGTGC
AGAAATCTAGTTCAATGTTTTGGTTATGGTTCTGCTCTTGTAGCGCGCAC
CCCTGTGCGATAAACCCGACATGTATGTGCAGCGTTGACTTAATTACGTG
TGTATGTGTCACACGGTGTTCGGAACGCACACCCACTGTGCGATAACTCC
GAGTGTGCATGTCTACATAAATAATAGGGTTGAAGGGTTAGGGTTAACCT
TACCCGGTGCGTGTATGTAAGTAGCTACGGAGAAGGTGGTTTTTAGTTAG
GGCGGTACCGCAGGTACGCATGCAAAGGCAGAAAAACGACGCGTTTATTC
GCCTGAAGTATCGAGCTGGACTCCAGCTTTGGTAGGTAGGGTAAGCGTTG
TTTCCGTCGGTGTTGTGCCGTAGTGAAGCTAGAAAACTACAGCATGCGTT
TTGTTTTTTGTGCTTGATTGATTGCCGATTCCAGCGAAAAACAGACCAAT
TTTTCTTCATTTGTTTTTACGTGTACACTGCTACACTGCGATACACATAG
ATACATACAAGTGGACTCCGACGACTTACCGTATCACAAAAGGCGCGAAT
GATTGCGGCTTGGTCGGGTTGTAGCCTTGCGCCCACTCGCAATATCACGC
AACATCACACCCGAGGGTATTTTTTTTGGTCGGGGCTATGTGCGATAGCC
CTGACTCCTGTGCGAAAACCTAATTAAGTTACTTCAGTAATACCGGCTTT
AGATATATGTATCACACAGGCCGGGGCTATCGCACAGGAGTGCGATAGCC
TTGCCCTGTGGGGTACATAGCCCGCACGTTTACGGTATGCATGCTTGCAT
GCATGCATGCATATTTTGTGTTGCCTTTACTTGGGATAATATTCGGCATT
TAACGTAGGATTGACATCGTGCCTCCAAAACACAGGACGTTCGCGATCTA
CTGGAGTTCTGGAGAGAGGGGGCGGGCGTTTTGGACAACGCGGCCTCCTG
AGATTCACGACCATGACAATACTTCACAAGTGTATGTCTATCTAGTCTTA
AAAGAGGTCAACGATCGATGGCGATCGACACCCACATACATAGAAGGCCA
TGAATGGGACGGCGGCTCAATAATGGGATGGAATGATGTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6453:3758..9548+

>mRNA_L-elsbetiae_contig6453.15126.1 ID=mRNA_L-elsbetiae_contig6453.15126.1|Name=mRNA_L-elsbetiae_contig6453.15126.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig6453:3758..9548+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACATCATGGTGGACGGCACCTTCTACAAGATGGACATCATGGTGGA
CGGCACCTTCTACAAGGTATTCGTGCTGAAGCGGCCCGGCGTGGACGAGT
TCCTGGAGCGCGTGGCGAAGCTGTACGAGGTGATCATCTTCACGGCAAGC
CTTCCCCAGTACGCGAACCCCCTCCTTGATCTGGTATTCGTGCTGAAGCG
GCCCGGCGTGGACGAGTTCCTGGAGCGCGTGGCGAAGCTGTACGAGGTGA
TCATCTTCACGGCAAGCCTTCCCCAGTACGCGAACCCCCTCCTTGATCTG
CTGGACCCGAAGGGCACGATCACGTCGCGGCTGTTCCGAGAGCACTGCAC
CTTCCACGAGGGCTACTTCGTGAAGCTGGACCCGAAGGGCACGATCACGT
CGCGGCTGTTCCGAGAGCACTGCACCTTCCACGAGGGCTACTTCGTGAAG
GACCTGACCCTGCTACGCCACCAGTCACTGGAATCCACCATCATCGTGGA
CAACTCCCCCATGGCCTACATGTTCCAGCCAGAGAACGCCATTGATTGCA
TCAGGACCTGACCCTGCTACGCCACCAGTCACTGGAATCCACCATCATCG
TGGACAACTCCCCCATGGCCTACATGTTCCAGCCAGAGAACGCCATTGAT
TGCATCAGCTGGATCGACGAGATAGACGACACGGAGCTAGACGTTATCGC
CGACTTCCTAGAAACCATCGTCGACGTTCCGCTGGATCGACGAGATAGAC
GACACGGAGCTAGACGTTATCGCCGACTTCCTAGAAACCATCGTCGACGT
TCCGGACGTTCGCGATCTACTGGAGTTCTGGAGAGAGGGGGCGGGCGTTT
TGGACAACGCGGCCTCCTGAGACGTTCGCGATCTACTGGAGTTCTGGAGA
GAGGGGGCGGGCGTTTTGGACAACGCGGCCTCCTGA
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