mRNA_L-elsbetiae_contig6436.15107.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6436.15107.1
Unique NamemRNA_L-elsbetiae_contig6436.15107.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6436.15107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6436contigL-elsbetiae_contig6436:981..2924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size384
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6436.15107.1prot_L-elsbetiae_contig6436.15107.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6436 981..2870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.3332076-CDS-L-elsbetiae_contig6436:980..11891622816710.3332076-CDS-L-elsbetiae_contig6436:980..1189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6436 981..1189 -
1691683757.05611-CDS-L-elsbetiae_contig6436:980..11891691683757.05611-CDS-L-elsbetiae_contig6436:980..1189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6436 981..1189 -
1622816710.3438823-CDS-L-elsbetiae_contig6436:2749..28701622816710.3438823-CDS-L-elsbetiae_contig6436:2749..2870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6436 2750..2870 -
1691683757.0656407-CDS-L-elsbetiae_contig6436:2749..28701691683757.0656407-CDS-L-elsbetiae_contig6436:2749..2870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6436 2750..2870 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.3537176-UTR-L-elsbetiae_contig6436:2870..29241622816710.3537176-UTR-L-elsbetiae_contig6436:2870..2924Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6436 2871..2924 -
1691683757.0740986-UTR-L-elsbetiae_contig6436:2870..29241691683757.0740986-UTR-L-elsbetiae_contig6436:2870..2924Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6436 2871..2924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6436.15107.1

>prot_L-elsbetiae_contig6436.15107.1 ID=prot_L-elsbetiae_contig6436.15107.1|Name=mRNA_L-elsbetiae_contig6436.15107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MQSHLMNKRRSEVSVAPLRPLALNRATSEILPYRGTLFLKVIKGTQLVQA
PTLPAQRETKSKLARLSAFLGDVRAEAGAMMHAVSVTSWLTDAEPEAGTS
GGDGDSPERR
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mRNA from alignment at L-elsbetiae_contig6436:981..2924-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6436.15107.1 ID=mRNA_L-elsbetiae_contig6436.15107.1|Name=mRNA_L-elsbetiae_contig6436.15107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1944bp|location=Sequence derived from alignment at L-elsbetiae_contig6436:981..2924- (Laminarionema elsbetiae ELsaHSoW15)
GAGCGGGTTGAACAAGACTGCTGCTCAGGGGCAGCACGTGCTGCTGCATA
AGCCATGCAGTCGCATCTTATGAATAAGCGGCGGTCGGAGGTGTCGGTTG
CGCCGCTGAGGCCGCTGGCGCTGAATCGAGCCACGTCGGAGATCCTCCCC
TACCGAGGCACACTATTCTTGAAGGGTGAGAGAGAGAGAGAGAGAGACAA
GAGAGCAGAGAGAGAGGTACCAGCAGAGGCCGACGGTAGATGGTGATGTT
ACGTGTTTTCTTTGCACACGTCGGGAACTGTGCGCATGCGTCGGGCTTTT
CCAAATCCCGGGTGTGCTGGGTTGTTGACTGTCAACAAAAGAAACATCGC
AGAGCAGAGAGCAGAATATTTTCCGCAACGCGTCGCCTTCCCTTAGATAT
CTATATCTGCAAGTATTCCTATAATGCGGAACGCGAAAGGTGCCCGAGAT
TGTGCCACAAAACCGTGCCTAAAACCCTGTCTTTATGAAGGTCGTCACCC
GAGGGTACTCAAGAAAGAGACCGAAGTTTGAGAAAAATTGGTTCGTTTGG
CAAGCAACGCCACCCCGCCACTCCCGTTGGTATCTAATTGTTGATTGTTG
TCACCGGACACGACGACAGCTGCTGCTTCGCTCTTGAATTGGACATTGCA
GCTTCGTTGCCGGTGGCGGGCCTCGCAGTATTCTGGTCTGCCGACCGGGA
TGCCATTCGAAAGCTATTCTGTCGTGCATCTCGGGGTTTTGTGCTACCTT
CTCTTGCTGCTTTTTTGTGTATCTAGATAGATGTAGTAACATACACCCGG
GTCTTCTCGATGTTATCTACCCTCTGGTAGCAAAAAGTCCACGAGGCGAA
CGGTACACATTTGACAATTCGGGATGGTAAGATACCACGGTACATACCGG
TTAAGAGAGAGAGAGGGAAAGAGAGATGTACCTACAATAGATAGAGATTA
TTGTGCAAATGCAAGCAACTCGCACACACACGCTCAACACGCGCAGGTAA
CGCGTCTGTGCAATATAACCAGGTCGCTCAATTGTAGTCAAGAAAGAAGT
CTGCAGGCGGTGGATGTTGCTCCGTACACGTGTGTACATCTGAGTTCTAA
ACAGCGAGAGAGGGATATAGACGAAACGCCTTCCCAATTCCGAGAGCCAA
TGCCACACCTCGCGCGTAGAAGGTAGAATTTTAGGAAAGGGCACACGCCC
TCGTATCTCCACCAAAATTCCCCAAAATGTCCGCTCCGAGCGACAGCAGT
TCATTTCATGCACATATCTTGTGTGGTATGCTCACCACAACAATAATGTC
GTACTTTTTTTTTGCCTGGCTTGTGTTGAGTGTTGATTTGATGGGTACCT
TTTGTGTCACATCCCTTTTCGACCATTTTTCCAATCGGCTCCTGCCACGA
CGTGTGATACGCCTCACTAGTAAAACCGGTCCATCCAACGAAGAGCCGAC
TTTCGTGGTCGCAGGTCGCAAAAGAAACGTACCTAATCAGTAAAAATCGT
AAAACTCTAGGAGCAGACTTTACTACTTTGCAGCGGGCGGGAAAACCTGG
CTTGTAACTTGTTGTCGTGACAACGCACGCACTTGATCACTGCTGTTTTC
CGCGCGCGCGCGCGCTAGTTCAAAGCGTTCGTAGCGCTTGTACGCGAGCC
GATCGATCAATCGCACCCCGCGACCTTACCGAACACGACCCGCCCCGATC
CAACCCAACCCAACCCAACCCCCAACCCTGACCAGTGATCAAAGGGACGC
AGCTGGTGCAGGCGCCGACACTCCCCGCCCAGAGAGAGACCAAGAGCAAG
CTGGCGAGGCTGTCGGCCTTTCTCGGGGACGTCAGGGCCGAAGCCGGAGC
CATGATGCACGCCGTCAGCGTCACATCTTGGCTCACCGATGCAGAGCCCG
AGGCGGGAACATCCGGCGGCGACGGTGACAGTCCCGAGAGAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6436:981..2924-

>mRNA_L-elsbetiae_contig6436.15107.1 ID=mRNA_L-elsbetiae_contig6436.15107.1|Name=mRNA_L-elsbetiae_contig6436.15107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig6436:981..2924- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGTCGCATCTTATGAATAAGCGGCGGTCGGAGGTGTCGGTTGCGCC
GCTGAGGCCGCTGGCGCTGAATCGAGCCACGTCGGAGATCCTCCCCTACC
GAGGCACACTATTCTTGAAGGATGCAGTCGCATCTTATGAATAAGCGGCG
GTCGGAGGTGTCGGTTGCGCCGCTGAGGCCGCTGGCGCTGAATCGAGCCA
CGTCGGAGATCCTCCCCTACCGAGGCACACTATTCTTGAAGGTGATCAAA
GGGACGCAGCTGGTGCAGGCGCCGACACTCCCCGCCCAGAGAGAGACCAA
GAGCAAGCTGGCGAGGCTGTCGGCCTTTCTCGGGGACGTCAGGGCCGAAG
CCGGAGCCATGATGCACGCCGTCAGCGTCACATCTTGGCTCACCGATGCA
GAGCCCGAGGCGGGAACATCCGGCGGCGACGGTGACAGTCCCGAGAGAAG
GTGATCAAAGGGACGCAGCTGGTGCAGGCGCCGACACTCCCCGCCCAGAG
AGAGACCAAGAGCAAGCTGGCGAGGCTGTCGGCCTTTCTCGGGGACGTCA
GGGCCGAAGCCGGAGCCATGATGCACGCCGTCAGCGTCACATCTTGGCTC
ACCGATGCAGAGCCCGAGGCGGGAACATCCGGCGGCGACGGTGACAGTCC
CGAGAGAAGG
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