mRNA_L-elsbetiae_contig643.15103.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig643.15103.1
Unique NamemRNA_L-elsbetiae_contig643.15103.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig643.15103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig643contigL-elsbetiae_contig643:29927..31121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBCP1 family
Ec32 orthologEc-19_003570.1
Exons2
Model size274
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.9648404-CDS-L-elsbetiae_contig643:29926..301331622816709.9648404-CDS-L-elsbetiae_contig643:29926..30133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig643 29927..30133 -
1691683756.834429-CDS-L-elsbetiae_contig643:29926..301331691683756.834429-CDS-L-elsbetiae_contig643:29926..30133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig643 29927..30133 -
1622816709.9755828-CDS-L-elsbetiae_contig643:31055..311211622816709.9755828-CDS-L-elsbetiae_contig643:31055..31121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig643 31056..31121 -
1691683756.8475435-CDS-L-elsbetiae_contig643:31055..311211691683756.8475435-CDS-L-elsbetiae_contig643:31055..31121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig643 31056..31121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig643.15103.1prot_L-elsbetiae_contig643.15103.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig643 29927..31121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig643.15103.1

>prot_L-elsbetiae_contig643.15103.1 ID=prot_L-elsbetiae_contig643.15103.1|Name=mRNA_L-elsbetiae_contig643.15103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MQAVPKLHEALVEDMAWAVENESTAATHPPVSPSCFPRPVLVGAFVAAGP
RAVGAGSVGAAFLPSLLPPRRPRVVPAKIDLRGAPRKVPIR
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mRNA from alignment at L-elsbetiae_contig643:29927..31121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig643.15103.1 ID=mRNA_L-elsbetiae_contig643.15103.1|Name=mRNA_L-elsbetiae_contig643.15103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1195bp|location=Sequence derived from alignment at L-elsbetiae_contig643:29927..31121- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGCGGTGCCCAAGCTGCATGAGGCGTTGGTGGAGGACATGGCTTG
GGCGGTGGAGAACGAGGTGGGTTTTTCTCTTCTTCATCGCTTTTTTCTTT
CTCGGTGGGCCTATTGTGCTAGTATACCACATCAGAAGCTGCGCCTGCGC
CGTCTTAACTCCAACAGCACGTCTGTCGGTTGCCGGATTTTGTTTTTTAG
CAAACGTCTACAAATGTCAGCAGTCTGTGTGAGTGTGTGTGTGTGTGTGT
GTGTGTGCTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAGACGTG
TACTACACCTTGCGGTGTACTTAGAGGTACTACACTTTGCAGAGCATTTG
TCTGTACAACTAAATAGAACCAACCGGGATCACATAGGAGGGGGTGAACA
CTGGGGCTTTTTCTTCTTTTTTATTTTATTTTTTGGCCCCACCTTCCTCC
TGCGGTGCTTGCCTTTATTTTCATTGCGTCTACGCCACCCCTTAATGAAA
AAGTTGTTCCAGGAGGACTGGACTACTGTTGTAGGCACACTACCCTCCCT
CGCCGTCCCAAGCTACATACCTGCACAAAATCCAGAAATCCGTACATAGT
TCGTTGGTGAAGAAAACTTCTCAGAGGGTCTGTTTCAGACAACCAGGAAA
AATTAAGTGGTTCTCCCCCCACCCCCCCCGCCCCGCACGGGCACAATCGC
CCCGTGGCGCGTTCGCAGCTGATGGTGCTTCCTGTGCTTTGCCAAGACTG
ATTGGTGTCTGTACACGTATGTTCCGCCATGTTTTGCTTGGAAACTTGGA
AACTTGGAAACGTCGTGGGTTTTGTCACCTGCACCACCACCTTTAGTTTG
GAAGGGCGGCGTGAGAGCCTTGTGTCTGGGTGACCGAAACTCTCCTGACT
GACGGTGTACTTGGTGCCGATCTGACCCTTTCTTCTCGGTGCTGCATCGC
TTGCCTGCCTTGTGCACCTGCCGCGCTCCATCCAATAGAGCACCGCGGCA
ACTCACCCTCCCGTTTCGCCATCTTGCTTCCCGCGCCCCGTCCTCGTCGG
TGCTTTCGTCGCGGCTGGGCCCCGCGCGGTCGGCGCGGGATCGGTCGGCG
CTGCATTCCTTCCTTCCCTCCTCCCGCCGCGGCGCCCCCGCGTTGTGCCG
GCCAAGATAGATCTCCGCGGAGCACCGCGAAAAGTTCCGATTCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig643:29927..31121-

>mRNA_L-elsbetiae_contig643.15103.1 ID=mRNA_L-elsbetiae_contig643.15103.1|Name=mRNA_L-elsbetiae_contig643.15103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig643:29927..31121- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGCGGTGCCCAAGCTGCATGAGGCGTTGGTGGAGGACATGGCTTG
GGCGGTGGAGAACGAGATGCAGGCGGTGCCCAAGCTGCATGAGGCGTTGG
TGGAGGACATGGCTTGGGCGGTGGAGAACGAGAGCACCGCGGCAACTCAC
CCTCCCGTTTCGCCATCTTGCTTCCCGCGCCCCGTCCTCGTCGGTGCTTT
CGTCGCGGCTGGGCCCCGCGCGGTCGGCGCGGGATCGGTCGGCGCTGCAT
TCCTTCCTTCCCTCCTCCCGCCGCGGCGCCCCCGCGTTGTGCCGGCCAAG
ATAGATCTCCGCGGAGCACCGCGAAAAGTTCCGATTCGAAGCACCGCGGC
AACTCACCCTCCCGTTTCGCCATCTTGCTTCCCGCGCCCCGTCCTCGTCG
GTGCTTTCGTCGCGGCTGGGCCCCGCGCGGTCGGCGCGGGATCGGTCGGC
GCTGCATTCCTTCCTTCCCTCCTCCCGCCGCGGCGCCCCCGCGTTGTGCC
GGCCAAGATAGATCTCCGCGGAGCACCGCGAAAAGTTCCGATTCGA
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