mRNA_L-elsbetiae_contig643.15102.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig643.15102.1
Unique NamemRNA_L-elsbetiae_contig643.15102.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig643.15102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig643contigL-elsbetiae_contig643:22480..24704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size479
Cds size477
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.910864-CDS-L-elsbetiae_contig643:22479..226781622816709.910864-CDS-L-elsbetiae_contig643:22479..22678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig643 22480..22678 -
1691683756.8053977-CDS-L-elsbetiae_contig643:22479..226781691683756.8053977-CDS-L-elsbetiae_contig643:22479..22678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig643 22480..22678 -
1622816709.928867-CDS-L-elsbetiae_contig643:24426..247041622816709.928867-CDS-L-elsbetiae_contig643:24426..24704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig643 24427..24704 -
1691683756.814811-CDS-L-elsbetiae_contig643:24426..247041691683756.814811-CDS-L-elsbetiae_contig643:24426..24704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig643 24427..24704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig643.15102.1prot_L-elsbetiae_contig643.15102.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig643 22480..24704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig643.15102.1

>prot_L-elsbetiae_contig643.15102.1 ID=prot_L-elsbetiae_contig643.15102.1|Name=mRNA_L-elsbetiae_contig643.15102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MQHSNSLPVAVFVNGTQGEWQRQRHLQEEERQIERRRRKWQDCPAAPPGH
ELQLLQAIRRYGYLVGTAMMPLVEMALFGTEVLSDIFFATIACAMTEEVV
MSVAATTVVADYWQHQRDRSKREGEGSRPKRERERRQWQQWHQREKEQQQ
QWARRSSEL
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mRNA from alignment at L-elsbetiae_contig643:22480..24704-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig643.15102.1 ID=mRNA_L-elsbetiae_contig643.15102.1|Name=mRNA_L-elsbetiae_contig643.15102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2225bp|location=Sequence derived from alignment at L-elsbetiae_contig643:22480..24704- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACACAGCAATTCCTTGCCCGTTGCGGTATTTGTTAACGGCACACA
GGGAGAATGGCAGCGGCAGCGGCATTTGCAAGAGGAAGAGAGGCAGATCG
AGCGGAGGCGGCGCAAATGGCAAGATTGCCCGGCGGCACCGCCCGGGCAT
GAGCTTCAGCTGCTGCAAGCAATCCGTAGGTATGGGTACCTTGTGGGGAC
TGCTATGATGCCTCTCGTGGAGATGGCTCTCTTCGGAACAGAAGTCCTGA
GCGACATCTTCTTCGCTACTATCGCTTGGTGAGTAATCAGTGTTATTTGA
CTCGCTTCTTTTTTGTTCCGCTCCTTTCAGTGGTGTGCCGGTTGGGGGGC
CCGCAATGGAATTCGCCGACCTTTTTCGGAGCTGCGAAAGCTGTAGCACA
CAGTCTTGGCGTCTGAGGACACTATCTGGTAGCTTATTTCTAGGCAGACT
AGTAGCGCTGAAGAAATCAAGGAAAACGAAGGGGTATAGGGCTCGAGAGA
CAGAAAAACATTTTCCAGAGGTACCCTGAGAGATATTCAGGCGTTTTTGA
GAGTTGGGAAATTCCTTGGAGCATCCCCGGGTACTCCGCCGGCACCTCAG
ATCATCGCTGCAGCCCATCCAGCTAAACCTAAGCCATCAAAACAGGCTGA
AACCCATAGTGTCATGCACTGTGGTGGTATTGGGCTTGTTGGCCTCTTTG
TCTGCTGTCTTTAAGCCATCAAAACAGGCTGAAACCCATAGTGTCATGCA
CCGTGGTGGTACTGGGCTTTGGCCTCTTTGTCTGCTGTCTGTGCCTGGTG
CGAGGGTCAAACGACACACGAACTTCCGGTGCTGACTGGCTGCATCGCTG
CGTTTTGATGGGCGTCAATCAATTGACCAAACTGTCTACGACTGAAAACG
GGCATCGGAGGCATACACCACTGTCATCATCTTTCTGTATCACCCGTCCA
TTACTGTGTTCGAGCTCGGTGGCGCAAGAAAACGGTAATCGCGTGGGAGC
GTATTTCCACACAATTTCCAAGTGGAAACCAGGTTCTCTCTCCGAGGGGA
GGTGTTATCTTGAGTGGTTGTTTGAGCGGGTGTTATCTTGTGTGGTAACG
GCACACATTCTCTGGTATCAATTTTCGCGAGGGCTGATATCAATTGACCA
ACAAAGGTTCGCGACCACAGCAGCGGTATTTCCTCTTACAGCTGCCTACT
GCTCAGTAGTCGAACCGTCAGAATCTGTGTTCGAGCTCCCCGAGCCGAGA
TATCTCTGCCAAGGCACGTGCCCCGAGCGGTCCAGTCTGTATCCCAGTGG
TACATGGAGGAGTTCTGCGAACCGAATCATATCTGCCGAGCCCCTTCTAG
GGTAATTATCTGCCGCCCCCCCCAACGTAACAACACTGCCTTTTCGGCGA
GATACTCTCTTCTCCGCGCATCGGTGTATGGGTGTACTGAGGGCCCAGAC
TAATGTTTCGCTGTCCCACATGTCCCGCCTCAAAAATTCCAACGGGATAT
GTGCCTTTAAAACCAAGAGTCAAATAACACTCTGTGATCCCAAACGATGT
TACAGAGGCACAATACATGTTAAGAAATACATCCCTGCCGACTCGGTTTC
AGAGCAGGCTATGCCGGTGTCACGGTTGCTTGTTTTTAGGAGAGCAACAT
CAAAGGCCCAGACGGTGGCGAAAAGTTGTTGTTTGATGTTCAAAGAGTCC
GTTTCCACCTCTCACAAGAGAAGTTACGACCAGCATGTCTCGATGCTAGA
GAGAACTGTACCCTCTAGTGTCCGTGAACCGGCTTTCGTTTCGAAGGCAG
ATACAAAGCCCACATAAATTCCAGTGGCTAAAGCGTTTGCCGTGCTTGCA
GCAGTTTTGGAGAAGCGTGAGAGCAACACACACCCTGTGTATGTGTACAA
CAAATGAAGCTATATTGGATAGTCCAAACAGCAGCAGCAGCAGTAGCAGA
AAGTCTACACTCCCTTTGAATGCGCATTTACACTCTAGTTCTGCACCACA
AATCCATGTATACTAAATACCTCCAGCGCAATGACGGAAGAGGTCGTCAT
GAGCGTCGCGGCGACAACGGTAGTGGCGGACTATTGGCAGCATCAGCGGG
ACCGAAGCAAGCGGGAGGGAGAGGGTTCCCGGCCGAAGAGGGAACGTGAG
CGGCGACAGTGGCAGCAGTGGCATCAGCGTGAAAAGGAACAGCAACAGCA
GTGGGCCAGAAGGAGTTCTGAGCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig643:22480..24704-

>mRNA_L-elsbetiae_contig643.15102.1 ID=mRNA_L-elsbetiae_contig643.15102.1|Name=mRNA_L-elsbetiae_contig643.15102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig643:22480..24704- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACACAGCAATTCCTTGCCCGTTGCGGTATTTGTTAACGGCACACA
GGGAGAATGGCAGCGGCAGCGGCATTTGCAAGAGGAAGAGAGGCAGATCG
AGCGGAGGCGGCGCAAATGGCAAGATTGCCCGGCGGCACCGCCCGGGCAT
GAGCTTCAGCTGCTGCAAGCAATCCGTAGGTATGGGTACCTTGTGGGGAC
TGCTATGATGCCTCTCGTGGAGATGGCTCTCTTCGGAACAGAAGTCCTGA
GCGACATCTTCTTCGCTACTATCGCTTGATGCAACACAGCAATTCCTTGC
CCGTTGCGGTATTTGTTAACGGCACACAGGGAGAATGGCAGCGGCAGCGG
CATTTGCAAGAGGAAGAGAGGCAGATCGAGCGGAGGCGGCGCAAATGGCA
AGATTGCCCGGCGGCACCGCCCGGGCATGAGCTTCAGCTGCTGCAAGCAA
TCCGTAGGTATGGGTACCTTGTGGGGACTGCTATGATGCCTCTCGTGGAG
ATGGCTCTCTTCGGAACAGAAGTCCTGAGCGACATCTTCTTCGCTACTAT
CGCTTGCGCAATGACGGAAGAGGTCGTCATGAGCGTCGCGGCGACAACGG
TAGTGGCGGACTATTGGCAGCATCAGCGGGACCGAAGCAAGCGGGAGGGA
GAGGGTTCCCGGCCGAAGAGGGAACGTGAGCGGCGACAGTGGCAGCAGTG
GCATCAGCGTGAAAAGGAACAGCAACAGCAGTGGGCCAGAAGGAGTTCTG
AGCTACGCAATGACGGAAGAGGTCGTCATGAGCGTCGCGGCGACAACGGT
AGTGGCGGACTATTGGCAGCATCAGCGGGACCGAAGCAAGCGGGAGGGAG
AGGGTTCCCGGCCGAAGAGGGAACGTGAGCGGCGACAGTGGCAGCAGTGG
CATCAGCGTGAAAAGGAACAGCAACAGCAGTGGGCCAGAAGGAGTTCTGA
GCTA
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