mRNA_L-elsbetiae_contig6427.15099.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6427.15099.1
Unique NamemRNA_L-elsbetiae_contig6427.15099.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6427.15099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6427contigL-elsbetiae_contig6427:4335..5619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size260
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6427.15099.1prot_L-elsbetiae_contig6427.15099.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6427 4342..5619 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.6532645-UTR-L-elsbetiae_contig6427:4334..43411622816709.6532645-UTR-L-elsbetiae_contig6427:4334..4341Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6427 4335..4341 +
1691683756.6259544-UTR-L-elsbetiae_contig6427:4334..43411691683756.6259544-UTR-L-elsbetiae_contig6427:4334..4341Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6427 4335..4341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.6689065-CDS-L-elsbetiae_contig6427:4341..44811622816709.6689065-CDS-L-elsbetiae_contig6427:4341..4481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6427 4342..4481 +
1691683756.6367543-CDS-L-elsbetiae_contig6427:4341..44811691683756.6367543-CDS-L-elsbetiae_contig6427:4341..4481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6427 4342..4481 +
1622816709.678719-CDS-L-elsbetiae_contig6427:5507..56191622816709.678719-CDS-L-elsbetiae_contig6427:5507..5619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6427 5508..5619 +
1691683756.6470268-CDS-L-elsbetiae_contig6427:5507..56191691683756.6470268-CDS-L-elsbetiae_contig6427:5507..5619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6427 5508..5619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6427.15099.1

>prot_L-elsbetiae_contig6427.15099.1 ID=prot_L-elsbetiae_contig6427.15099.1|Name=mRNA_L-elsbetiae_contig6427.15099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
MVAVWKLLRCAAVFPVATHAFTFPASHRWPTGGRAAARGNSESCSIRLTP
RSGGATALQSPTWSASLGHGGRRCRTTAPTAIRR
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mRNA from alignment at L-elsbetiae_contig6427:4335..5619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6427.15099.1 ID=mRNA_L-elsbetiae_contig6427.15099.1|Name=mRNA_L-elsbetiae_contig6427.15099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1285bp|location=Sequence derived from alignment at L-elsbetiae_contig6427:4335..5619+ (Laminarionema elsbetiae ELsaHSoW15)
GTATGTGATGGTCGCTGTGTGGAAGCTACTACGGTGTGCGGCGGTGTTTC
CAGTAGCTACCCATGCCTTCACCTTTCCCGCTTCCCACCGGTGGCCTACA
GGGGGGCGGGCGGCAGCACGCGGAAACAGCGAAAGCTGCTCGATCAGGTG
AGAGACGGACACGTCACGCCGGTTGGTGCCAACGAGGTGGCCGTTGTTGA
ACAAAAGAGCAAAGCTTGGGTACATTGTATTCAAGTGAAGTATGTGAGTT
GGGGGTAAACTATGTCCTTGAAATGCCTGGTAGTCGGGTTCGTTCAAAAC
TGGAGGTCACCTCATGTGACGTATCTACATACATACAGTAAGTTTCTGCA
TGTACCTGAATAGTGTACAAGCATCTCGACAGAAACCTTGAACACGTGCG
CCATATACGAGACAAACAAGGACATACATACTGCTGTCGTTAACCGGTAC
CGCTGATGGTGAACTCGGGATTTGTACGTTGTCTGTCACCAATGTTTGAG
CGAGTCACCCTCCCCCCATAGCCAAGGGTCTGCTGGGTCTTCACTCGCTT
GTCATCGAACACTCTGTTGCTGCTCCTGCCGCGGTAGCAGCTACCGCCCA
GACGCTCTGTATGAGTACAGCAAAACGGGCACGGTGCTCTGTTTACTACT
GTAGGGCTTTCGCTCTGGAAAACATGTTGCCGGTCAAATCTGGGGACAGA
GCGCTTTCACGTTTACATGTGATGACTGATTGCTGATGCTGTCTCGTGAG
GGCCGTGCCATTTCGAGGCCATTTCGGCGGTTGGCCCACATGTCGCCACC
GTCCATTGCAACGGAGCCCCCCTTCCCCCCCGCGGGCAGCATCTGCACAT
ATAGGCGCGGCTCAATAAGAAAAATAATCGAAAGTGGCATGAGTTGTGTG
TAGTGGTATAGTGGGTTTTGCTGAGATTCGGCTGAGATGGGCCTCTATAT
GGTGGCACTACTCCAGTACATAATACTTCTATAAATTGCGTCTGCAACAC
GCCAGGTGCTGTAGTGTACCCGGGAGTTCAACGTCGACCAGACCGGGGGT
TTACTCGTAGATTATACCGTAGATTGAAGTCTCATACGTCCAGCCCTCAA
TCCCGTCGTGTCTTTCCCCTCCGTTGCCCTTGCCCGGACCGGCGAATCCC
TCGACCCCTACCTCCTCTCGCAGGCTTACGCCTAGATCGGGAGGGGCGAC
TGCGTTACAATCGCCAACATGGTCAGCATCGCTCGGGCACGGTGGACGCA
GGTGCAGAACAACAGCACCAACAGCGATAAGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6427:4335..5619+

>mRNA_L-elsbetiae_contig6427.15099.1 ID=mRNA_L-elsbetiae_contig6427.15099.1|Name=mRNA_L-elsbetiae_contig6427.15099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig6427:4335..5619+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGCTGTGTGGAAGCTACTACGGTGTGCGGCGGTGTTTCCAGTAGC
TACCCATGCCTTCACCTTTCCCGCTTCCCACCGGTGGCCTACAGGGGGGC
GGGCGGCAGCACGCGGAAACAGCGAAAGCTGCTCGATCAGATGGTCGCTG
TGTGGAAGCTACTACGGTGTGCGGCGGTGTTTCCAGTAGCTACCCATGCC
TTCACCTTTCCCGCTTCCCACCGGTGGCCTACAGGGGGGCGGGCGGCAGC
ACGCGGAAACAGCGAAAGCTGCTCGATCAGGCTTACGCCTAGATCGGGAG
GGGCGACTGCGTTACAATCGCCAACATGGTCAGCATCGCTCGGGCACGGT
GGACGCAGGTGCAGAACAACAGCACCAACAGCGATAAGGCGGGCTTACGC
CTAGATCGGGAGGGGCGACTGCGTTACAATCGCCAACATGGTCAGCATCG
CTCGGGCACGGTGGACGCAGGTGCAGAACAACAGCACCAACAGCGATAAG
GCGG
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