mRNA_L-elsbetiae_contig6426.15097.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6426.15097.1
Unique NamemRNA_L-elsbetiae_contig6426.15097.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6426.15097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6426contigL-elsbetiae_contig6426:8563..9738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size394
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.5624678-CDS-L-elsbetiae_contig6426:8564..86361622816709.5624678-CDS-L-elsbetiae_contig6426:8564..8636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6426 8565..8636 -
1691683756.5844665-CDS-L-elsbetiae_contig6426:8564..86361691683756.5844665-CDS-L-elsbetiae_contig6426:8564..8636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6426 8565..8636 -
1622816709.573939-CDS-L-elsbetiae_contig6426:9420..97381622816709.573939-CDS-L-elsbetiae_contig6426:9420..9738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6426 9421..9738 -
1691683756.5943072-CDS-L-elsbetiae_contig6426:9420..97381691683756.5943072-CDS-L-elsbetiae_contig6426:9420..9738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6426 9421..9738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6426.15097.1prot_L-elsbetiae_contig6426.15097.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6426 8565..9738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6426.15097.1

>prot_L-elsbetiae_contig6426.15097.1 ID=prot_L-elsbetiae_contig6426.15097.1|Name=mRNA_L-elsbetiae_contig6426.15097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
PFVESTRWPVDRRGRGVKVPVLLPVPRVSMFFSFENARHIGAQLPLLSLS
SSSPSAAQHRYGSCSPNARPLQPPRQQRRCTFSPCFGGGRIVLGRIIIFI
SSFKPQMTSAAFEGSTISHAIDEFMTAIGP
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mRNA from alignment at L-elsbetiae_contig6426:8563..9738-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6426.15097.1 ID=mRNA_L-elsbetiae_contig6426.15097.1|Name=mRNA_L-elsbetiae_contig6426.15097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig6426:8563..9738- (Laminarionema elsbetiae ELsaHSoW15)
CCATTCGTGGAAAGTACAAGGTGGCCTGTGGATAGGAGGGGACGGGGCGT
AAAAGTCCCCGTTCTCCTCCCCGTCCCTCGCGTGAGCATGTTTTTCAGTT
TTGAAAATGCGCGCCACATCGGCGCACAACTCCCACTGCTCTCTCTCTCT
TCCTCTTCTCCCTCAGCCGCACAACATCGATATGGCTCCTGTTCACCAAA
TGCGCGCCCTCTCCAACCCCCACGGCAACAGCGGCGCTGCACCTTCTCGC
CGTGCTTCGGTGGGGGGCGCATCGTCCTCGGGCGCATCATCATCTTCATC
AGCTCCTTCAAACCGCAGGTACACGGACTCAAGCAATAAAGGGAAGGGCA
AGTGTCGTCGTCACAGCATGCGTTCGGTCATTAGCTCGAACGACAGCCCC
GACCCGGCTGCGGAGACCATGAAAGAATGCGCCAAGGTAAGGAAGGTCCT
GTGTGCGTGCTGTACGTCTTACCCCAATTTCTGGTGTGTGTAGTGTGTGG
CTGTCGTAGATCAAGGCTTTTTTTTTTCATGTGTTGCTCATGTTTCTTAT
TTGCTGTGGAGGTGCGCGTGTAGACTAATAGGTTGTGCCGCGCCGCGTTT
TATATACTCGTTCTACATACGCATGTTTTGGGCATGAACGATCGCCACGG
ATGATGATTTCATGCGTTGTCGACCACTAACCCACGCCAGGTGACAATTC
GATACCAGCCAGCTTTCGCGCCAACCCGCACGCGCCCCCCCCCTCTTGAC
CCATTGTAAATATGTATATATAGACTACAATATAACCAATAATTCGATAA
TTGACCACCCCCCAAATCGTTGGCTTATATCTGCCGCGACATTTTGAGTG
GTGCCCCCCCGTCTTGTGTGTCCTCCCCTGTCACTATCGCCAATAGCACT
TCAGTGCTATGTACAAACGAACGACTACATACGCCTCGTCCAGGCTAAAA
AAATGTGCTATTTAATTTCCCAAGATATTGGAGTCCTGGTCACTCACACC
AGCAGCAGCCACACTCGGCCCTCCGAAATGGTTCGATGTGTTGCTCTCAT
TAGAACACGCTCCCTTGTTTTGCCCACATGTTTTTTCTACTCGTGTTCGT
AGATGACATCGGCTGCGTTCGAAGGGTCAACCATCTCTCACGCCATCGAC
GAATTCATGACGGCCATCGGCCCCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6426:8563..9738-

>mRNA_L-elsbetiae_contig6426.15097.1 ID=mRNA_L-elsbetiae_contig6426.15097.1|Name=mRNA_L-elsbetiae_contig6426.15097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig6426:8563..9738- (Laminarionema elsbetiae ELsaHSoW15)
CCATTCGTGGAAAGTACAAGGTGGCCTGTGGATAGGAGGGGACGGGGCGT
AAAAGTCCCCGTTCTCCTCCCCGTCCCTCGCGTGAGCATGTTTTTCAGTT
TTGAAAATGCGCGCCACATCGGCGCACAACTCCCACTGCTCTCTCTCTCT
TCCTCTTCTCCCTCAGCCGCACAACATCGATATGGCTCCTGTTCACCAAA
TGCGCGCCCTCTCCAACCCCCACGGCAACAGCGGCGCTGCACCTTCTCGC
CGTGCTTCGGTGGGGGGCGCATCGTCCTCGGGCGCATCATCATCTTCATC
AGCTCCTTCAAACCGCAGCCATTCGTGGAAAGTACAAGGTGGCCTGTGGA
TAGGAGGGGACGGGGCGTAAAAGTCCCCGTTCTCCTCCCCGTCCCTCGCG
TGAGCATGTTTTTCAGTTTTGAAAATGCGCGCCACATCGGCGCACAACTC
CCACTGCTCTCTCTCTCTTCCTCTTCTCCCTCAGCCGCACAACATCGATA
TGGCTCCTGTTCACCAAATGCGCGCCCTCTCCAACCCCCACGGCAACAGC
GGCGCTGCACCTTCTCGCCGTGCTTCGGTGGGGGGCGCATCGTCCTCGGG
CGCATCATCATCTTCATCAGCTCCTTCAAACCGCAGATGACATCGGCTGC
GTTCGAAGGGTCAACCATCTCTCACGCCATCGACGAATTCATGACGGCCA
TCGGCCCCATGACATCGGCTGCGTTCGAAGGGTCAACCATCTCTCACGCC
ATCGACGAATTCATGACGGCCATCGGCCCC
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