mRNA_L-elsbetiae_contig6426.15096.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6426.15096.1
Unique NamemRNA_L-elsbetiae_contig6426.15096.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6426.15096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6426contigL-elsbetiae_contig6426:878..1534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size659
Cds size618
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.6100993-CDS-L-elsbetiae_contig6426:877..14951622816709.6100993-CDS-L-elsbetiae_contig6426:877..1495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6426 878..1495 +
1691683756.6065946-CDS-L-elsbetiae_contig6426:877..14951691683756.6065946-CDS-L-elsbetiae_contig6426:877..1495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6426 878..1495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.6219246-UTR-L-elsbetiae_contig6426:1495..15341622816709.6219246-UTR-L-elsbetiae_contig6426:1495..1534Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6426 1496..1534 +
1691683756.6162643-UTR-L-elsbetiae_contig6426:1495..15341691683756.6162643-UTR-L-elsbetiae_contig6426:1495..1534Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6426 1496..1534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6426.15096.1prot_L-elsbetiae_contig6426.15096.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6426 878..1495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6426.15096.1

>prot_L-elsbetiae_contig6426.15096.1 ID=prot_L-elsbetiae_contig6426.15096.1|Name=mRNA_L-elsbetiae_contig6426.15096.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
SLPAVARRTTHGGHRWRRHPEGVRNYLRNGGNTGVGNFNILQYGAPEDLF
PTLNVQNGELIPAHLAHVNQRFAQFHREIDQFRNVVVPFQRKKGQAHQPF
QMEITEVKVNAIELVFETQLAKVRIYKRGSSRHGALRFNDGHGLRLDGRD
DSGRHRTDYLRWDSRRYSRRRRGRKNRLDVLYSALGRGRPACSTACVALT
CAKTN*
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mRNA from alignment at L-elsbetiae_contig6426:878..1534+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6426.15096.1 ID=mRNA_L-elsbetiae_contig6426.15096.1|Name=mRNA_L-elsbetiae_contig6426.15096.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=657bp|location=Sequence derived from alignment at L-elsbetiae_contig6426:878..1534+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCTGCCCGCCGTAGCCCGCCGGACCACCCATGGCGGCCACCGGTGGCG
TCGCCACCCCGAAGGCGTTCGTAATTATCTGCGAAACGGTGGCAACACGG
GGGTCGGAAATTTCAACATACTTCAGTATGGAGCACCGGAGGATCTCTTC
CCAACCTTGAACGTACAAAATGGGGAGCTTATCCCGGCACACCTTGCACA
TGTTAACCAGCGCTTCGCGCAATTTCACCGTGAGATCGACCAGTTTCGCA
ACGTCGTCGTGCCCTTTCAACGGAAGAAGGGTCAGGCTCACCAACCATTT
CAGATGGAAATTACCGAGGTCAAGGTTAATGCGATCGAGCTCGTCTTCGA
AACGCAGCTCGCCAAGGTGCGTATCTACAAACGAGGCAGCAGCCGACATG
GGGCGCTCCGATTTAACGACGGGCACGGGCTCCGTCTTGACGGACGCGAC
GACAGCGGCAGGCACCGGACAGACTACCTCAGGTGGGACAGCAGGCGCTA
CAGCCGGCGACGGCGCGGCCGAAAGAACCGGCTCGACGTGCTCTACTCTG
CCCTCGGCAGGGGGCGGCCCGCATGCAGCACAGCTTGCGTCGCCCTCACA
TGCGCCAAAACTAACTGACTCGTCGACGTCTACGGCGACAGGTTCGGGGC
GAAACGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6426:878..1534+

>mRNA_L-elsbetiae_contig6426.15096.1 ID=mRNA_L-elsbetiae_contig6426.15096.1|Name=mRNA_L-elsbetiae_contig6426.15096.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig6426:878..1534+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCTGCCCGCCGTAGCCCGCCGGACCACCCATGGCGGCCACCGGTGGCG
TCGCCACCCCGAAGGCGTTCGTAATTATCTGCGAAACGGTGGCAACACGG
GGGTCGGAAATTTCAACATACTTCAGTATGGAGCACCGGAGGATCTCTTC
CCAACCTTGAACGTACAAAATGGGGAGCTTATCCCGGCACACCTTGCACA
TGTTAACCAGCGCTTCGCGCAATTTCACCGTGAGATCGACCAGTTTCGCA
ACGTCGTCGTGCCCTTTCAACGGAAGAAGGGTCAGGCTCACCAACCATTT
CAGATGGAAATTACCGAGGTCAAGGTTAATGCGATCGAGCTCGTCTTCGA
AACGCAGCTCGCCAAGGTGCGTATCTACAAACGAGGCAGCAGCCGACATG
GGGCGCTCCGATTTAACGACGGGCACGGGCTCCGTCTTGACGGACGCGAC
GACAGCGGCAGGCACCGGACAGACTACCTCAGGTGGGACAGCAGGCGCTA
CAGCCGGCGACGGCGCGGCCGAAAGAACCGGCTCGACGTGCTCTACTCTG
CCCTCGGCAGGGGGCGGCCCGCATGCAGCACAGCTTGCGTCGCCCTCACA
TGCGCCAAAACTAACTGAAGCCTGCCCGCCGTAGCCCGCCGGACCACCCA
TGGCGGCCACCGGTGGCGTCGCCACCCCGAAGGCGTTCGTAATTATCTGC
GAAACGGTGGCAACACGGGGGTCGGAAATTTCAACATACTTCAGTATGGA
GCACCGGAGGATCTCTTCCCAACCTTGAACGTACAAAATGGGGAGCTTAT
CCCGGCACACCTTGCACATGTTAACCAGCGCTTCGCGCAATTTCACCGTG
AGATCGACCAGTTTCGCAACGTCGTCGTGCCCTTTCAACGGAAGAAGGGT
CAGGCTCACCAACCATTTCAGATGGAAATTACCGAGGTCAAGGTTAATGC
GATCGAGCTCGTCTTCGAAACGCAGCTCGCCAAGGTGCGTATCTACAAAC
GAGGCAGCAGCCGACATGGGGCGCTCCGATTTAACGACGGGCACGGGCTC
CGTCTTGACGGACGCGACGACAGCGGCAGGCACCGGACAGACTACCTCAG
GTGGGACAGCAGGCGCTACAGCCGGCGACGGCGCGGCCGAAAGAACCGGC
TCGACGTGCTCTACTCTGCCCTCGGCAGGGGGCGGCCCGCATGCAGCACA
GCTTGCGTCGCCCTCACATGCGCCAAAACTAACTGA
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