mRNA_L-elsbetiae_contig6421.15094.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6421.15094.1
Unique NamemRNA_L-elsbetiae_contig6421.15094.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6421.15094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6421contigL-elsbetiae_contig6421:6505..6953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size449
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6421.15094.1prot_L-elsbetiae_contig6421.15094.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6421 6518..6829 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.3112118-UTR-L-elsbetiae_contig6421:6504..65171622816709.3112118-UTR-L-elsbetiae_contig6421:6504..6517Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6421 6505..6517 +
1691683756.423646-UTR-L-elsbetiae_contig6421:6504..65171691683756.423646-UTR-L-elsbetiae_contig6421:6504..6517Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6421 6505..6517 +
1622816709.3349583-UTR-L-elsbetiae_contig6421:6829..69531622816709.3349583-UTR-L-elsbetiae_contig6421:6829..6953Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6421 6830..6953 +
1691683756.4434965-UTR-L-elsbetiae_contig6421:6829..69531691683756.4434965-UTR-L-elsbetiae_contig6421:6829..6953Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6421 6830..6953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.3226964-CDS-L-elsbetiae_contig6421:6517..68291622816709.3226964-CDS-L-elsbetiae_contig6421:6517..6829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6421 6518..6829 +
1691683756.4336238-CDS-L-elsbetiae_contig6421:6517..68291691683756.4336238-CDS-L-elsbetiae_contig6421:6517..6829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6421 6518..6829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6421.15094.1

>prot_L-elsbetiae_contig6421.15094.1 ID=prot_L-elsbetiae_contig6421.15094.1|Name=mRNA_L-elsbetiae_contig6421.15094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MYSLVDAFFFMKALDVTVEKLRYCCCGWLSSPLPSPTLLLLPCFLCVTVC
TRGVAKLTHELGGGGGGGGGTPRATMLRRSNFLSPPSHKLYVCSLSLSSE
CVQ*
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mRNA from alignment at L-elsbetiae_contig6421:6505..6953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6421.15094.1 ID=mRNA_L-elsbetiae_contig6421.15094.1|Name=mRNA_L-elsbetiae_contig6421.15094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=449bp|location=Sequence derived from alignment at L-elsbetiae_contig6421:6505..6953+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCTCAATAGGTATGTACTCTCTGGTAGATGCTTTCTTTTTCATGAAAG
CACTCGACGTCACGGTAGAAAAACTCCGATACTGCTGCTGTGGATGGTTG
TCTTCGCCTCTGCCGTCACCGACACTGCTGCTGCTGCCGTGCTTTCTGTG
TGTCACCGTTTGTACACGGGGAGTTGCTAAATTAACACACGAACTTGGTG
GTGGTGGTGGCGGTGGTGGTGGGACACCAAGAGCAACAATGTTGAGGCGC
AGCAATTTCTTGTCTCCGCCAAGCCACAAGTTGTATGTATGTAGCTTGTC
ACTTTCGAGTGAATGTGTTCAATGAAAAAGCAGCGCCTGCTGCAAAATCA
TCCCTACTCTGCGGAGTACACACGCTCGCACAATGGAGGGCCCGCGTCTA
CATCGCGCATGTGCGACATGCTTTCCTTGCGCCACTCGCTCGCGTGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6421:6505..6953+

>mRNA_L-elsbetiae_contig6421.15094.1 ID=mRNA_L-elsbetiae_contig6421.15094.1|Name=mRNA_L-elsbetiae_contig6421.15094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig6421:6505..6953+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTCTCTGGTAGATGCTTTCTTTTTCATGAAAGCACTCGACGTCAC
GGTAGAAAAACTCCGATACTGCTGCTGTGGATGGTTGTCTTCGCCTCTGC
CGTCACCGACACTGCTGCTGCTGCCGTGCTTTCTGTGTGTCACCGTTTGT
ACACGGGGAGTTGCTAAATTAACACACGAACTTGGTGGTGGTGGTGGCGG
TGGTGGTGGGACACCAAGAGCAACAATGTTGAGGCGCAGCAATTTCTTGT
CTCCGCCAAGCCACAAGTTGTATGTATGTAGCTTGTCACTTTCGAGTGAA
TGTGTTCAATGAATGTACTCTCTGGTAGATGCTTTCTTTTTCATGAAAGC
ACTCGACGTCACGGTAGAAAAACTCCGATACTGCTGCTGTGGATGGTTGT
CTTCGCCTCTGCCGTCACCGACACTGCTGCTGCTGCCGTGCTTTCTGTGT
GTCACCGTTTGTACACGGGGAGTTGCTAAATTAACACACGAACTTGGTGG
TGGTGGTGGCGGTGGTGGTGGGACACCAAGAGCAACAATGTTGAGGCGCA
GCAATTTCTTGTCTCCGCCAAGCCACAAGTTGTATGTATGTAGCTTGTCA
CTTTCGAGTGAATGTGTTCAATGA
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