mRNA_L-elsbetiae_contig6411.15089.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6411.15089.1
Unique NamemRNA_L-elsbetiae_contig6411.15089.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6411.15089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6411contigL-elsbetiae_contig6411:7058..8545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_001080.1
Exons2
Model size236
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.9114823-CDS-L-elsbetiae_contig6411:7059..70941622816708.9114823-CDS-L-elsbetiae_contig6411:7059..7094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6411 7060..7094 -
1691683756.1287684-CDS-L-elsbetiae_contig6411:7059..70941691683756.1287684-CDS-L-elsbetiae_contig6411:7059..7094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6411 7060..7094 -
1622816708.9256346-CDS-L-elsbetiae_contig6411:8346..85451622816708.9256346-CDS-L-elsbetiae_contig6411:8346..8545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6411 8347..8545 -
1691683756.1379902-CDS-L-elsbetiae_contig6411:8346..85451691683756.1379902-CDS-L-elsbetiae_contig6411:8346..8545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6411 8347..8545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6411.15089.1prot_L-elsbetiae_contig6411.15089.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6411 7060..8545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6411.15089.1

>prot_L-elsbetiae_contig6411.15089.1 ID=prot_L-elsbetiae_contig6411.15089.1|Name=mRNA_L-elsbetiae_contig6411.15089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
KAFVRSAADDIALLVDLAAAADRLGKKETGGGGGGGVSDGERGAAHSRRS
PCMFDVLWAAASLSAEEADRDKRTDTPS
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mRNA from alignment at L-elsbetiae_contig6411:7058..8545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6411.15089.1 ID=mRNA_L-elsbetiae_contig6411.15089.1|Name=mRNA_L-elsbetiae_contig6411.15089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1488bp|location=Sequence derived from alignment at L-elsbetiae_contig6411:7058..8545- (Laminarionema elsbetiae ELsaHSoW15)
AAAGCCTTCGTCCGAAGCGCTGCTGACGACATCGCCCTCCTCGTCGACTT
GGCGGCGGCGGCCGACCGGCTAGGGAAGAAGGAGACGGGCGGCGGCGGCG
GCGGTGGCGTGTCGGACGGGGAGAGGGGGGCAGCGCACTCTCGCCGATCC
CCGTGTATGTTCGACGTGTTGTGGGCTGCGGCATCTCTTTCAGCTGAAGG
TAAGGAGTCCTTGTACCTATGTATGGCCGCTGCTGCGATTTCTTCGTCCT
AGGAATGCAGTGAAGGCTACGCGCGGCGTGATTATTCCTTGAGGGACCGC
CTACGCAGAAATTAATTTTATGCTACTAACTCTAACCCTAACCCTAACCC
TAACCCCAACCACCGACCCCCCCAAACGGTTTCCATACTTTATCCCATAA
GTTAGCTTAAGACAAAAACCCCGCGTAGACTACTGTCCTTGAGATGACGA
GACGACAACCAATGGCCTAGTTCCCAACCGGATTTATGGCACGGCGGTGC
TTAACCCTTTTAGTACTAGAAGCCCGTTTGGAGACGATTTGGCGACACCT
AACGTTGGTCACTCTTTTATGACTTTGGGGTGCACGGGCGGTCTTGGTAT
CCCGTACAAAGGCCTGGGAGAACCCGGCCGATGTTGTATAGACACTTTAC
CTACCGTATCTGGCCTCCTCACAGCTCCACAGCAGTGCTGTGGACACAGC
GGAGTTGTCGTCGATATCTCAAAATCACGAAACAATCAATGTGTCTGCGA
TTCCAAACTCTGTACTTTCCGCGGCACCCCCAGCGATTTGAGCCTTTGAG
CTGACAGCACGCACGCACAGCTTCGCTGTAACTCTCAAGAGCCACCGCAT
GCTGAGCCTAGAGCGGGTTGCTTCGCTCGCCACGCTGCATCATACGTTGT
GAGGGCTGCTGCGCGTGCGCAGCCCAGGGTTCATCCCATGTCTCTTTAGG
ACAAAATAACTCTGTATTGTCTAGTATGCCAAAAAGGTTCGACTTGGGTT
GAGTACTGAAAGTGTCGCCAAACGTTTCACAGAGTTTGACTGCTATTTGG
TATAGAAAGTGTCGCCAAATTCGTGTGGGGCCCTACAGCTGGTTTCTGCA
GGGCCTTGCACTGTGAGACTGTCCTTCTCGACCAATCAGCGGGCATCTAG
AACAGCTCGATAACTCTGATCCGATAACTTTGGTTCTCGGGGACCTTCCG
TACTGAAAGTGTTAATGTGCCCCTTTCGACTGAACAACACCTGTCTGTTG
CTTGTTTTGTTCACACTCCCGCTAGTTTTTCTGTTTTGTGTAGTAAAATA
AACCGGTCAGAGAAGCCGAGGGCGGGTGTGAAGCGACCTAACCTTGTGTT
TGTGTGTTCGTTCCCTCGCTGCTACTTCGCTGCGCTTTTTTTCGATATGG
GTCTATCCGTTACCTCCCTCCCGCCCTCTCTCCGCGTGTGCTACTTTTTA
GAAGCCGACCGAGACAAGCGCACGGACACGCCATCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6411:7058..8545-

>mRNA_L-elsbetiae_contig6411.15089.1 ID=mRNA_L-elsbetiae_contig6411.15089.1|Name=mRNA_L-elsbetiae_contig6411.15089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig6411:7058..8545- (Laminarionema elsbetiae ELsaHSoW15)
AAAGCCTTCGTCCGAAGCGCTGCTGACGACATCGCCCTCCTCGTCGACTT
GGCGGCGGCGGCCGACCGGCTAGGGAAGAAGGAGACGGGCGGCGGCGGCG
GCGGTGGCGTGTCGGACGGGGAGAGGGGGGCAGCGCACTCTCGCCGATCC
CCGTGTATGTTCGACGTGTTGTGGGCTGCGGCATCTCTTTCAGCTGAAGA
AAGCCTTCGTCCGAAGCGCTGCTGACGACATCGCCCTCCTCGTCGACTTG
GCGGCGGCGGCCGACCGGCTAGGGAAGAAGGAGACGGGCGGCGGCGGCGG
CGGTGGCGTGTCGGACGGGGAGAGGGGGGCAGCGCACTCTCGCCGATCCC
CGTGTATGTTCGACGTGTTGTGGGCTGCGGCATCTCTTTCAGCTGAAGAA
GCCGACCGAGACAAGCGCACGGACACGCCATCCAAGCCGACCGAGACAAG
CGCACGGACACGCCATCC
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