mRNA_L-elsbetiae_contig641.15086.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
|
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig641.15086.1 vs. uniprot
Match: D7G286_ECTSI (Centrin-1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G286_ECTSI) HSP 1 Score: 1560 bits (4040), Expect = 0.000e+0 Identity = 1226/2557 (47.95%), Postives = 1412/2557 (55.22%), Query Frame = 1
Query: 40 LRRDRDLSTAPAWIGLPDLSGVDLAQTQTFLVDRKARPRKRRWGDDWRELIIGASPYNRAAAKARAGRRARAERGASTTADALAEMEDQVSASLLGAVPKEFCRDAPPAA-------------IEAMEMGQDNQDRSPDNRTVGR-----GFNASATIVERSQINS----APTDGGGSFATALQFNNCRSTLPRSPRLRQRLQEQQKSPSYKQQRGAPIAVISAGDEKGTGDRNRQERSRRRLAAFLEKKAALSEAPLSAPVPAVDHGVGRYTTSPSNXXXXXXXINNTDQELFGLGGDALASAAPSESMTANFIGLLERSLGRGVWADPVASQLARPLNAILAYLPPEGARLHAESGLEFQPLGCHGGPAPLESPLLPAEEIRIATTSGPVTGAPSGTGGAGG---NGAATAPGGVGRGRTLAAPEKDGVPASSGLPLLTVTMENGAAEEAPSAVWLGRVAAVMEARGDRDEAVRLYGEAAAVLTGVDRNCHIGAAVDGSSHRVGGVGAGMPTAMG-GR-----GGGGGCSGGVGMNNLFPYSARAHYLASMIERNYRRHFNRRAAAQTRAGATFRGHLARAGARRDRICRVSAATFVARAWRRRMHRLNVATGKLQAVVRGADARRRVKELRIAIRNAITAQSGVRMFLAKRTARRLRLEVASAGLLQALQRGFALRRVRAAAISEIHGKLWQAALGLNRVARGFLHRRFAGMVRQFAMDEEIERSEAEASVVGRAGRLAVTRVDIYLTTDAGKAELAQETRRAKAAAARASILMRGASPEKRRRASARGVFGSFDLDGSGTIDKTELQPLLGALGMSVTDAELK--------------------------------------------------------------------------------------------------AHRSVRAATGMALKERARRGVVRRWVASVARQAQVRFREDRPPALECCVCHQAFRLYGEYWRHFGGGRCEWHRRRRAERQWARLLDERRCLEVAGIRAEAAEEARIASKGSTGARELSALGLRVHTVILAELKSGLGTASEERKPGGVPSTEEARSAVARSAFQAFDRDGNGSLDVSDLADLLGVLKGIPKRPTSAGPGTGASVGAAATGLGLEAAMDAMDEDQSGQIDIGEFMSWFDGCGFRSGGAAEVTPASSSGDWPQ---EAGARLHVKVRSSLAGGDVGGAPRQRAGGRTEQGKEEGDYIDAHSTETGSXXXXXXXXXXXXXXXXDSSRGSAPPSVTDRDGAEKTKSQKGRAXXXXXXXGEEGRGGVFGMGALWRRTKTTGGKAAPATDEPNGHTSAKCKRSDEKKPTQQNQRSETASRLGAFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDESLTPPHPPSASDAPAETPCGRRAFFSPARFLQQRSLRRAASADPWKRHRKTLRAVAEREARTLLLRRARLRAQASSLARLGRC*FRVTRPPEFQAWSSLAFLEEHHDIVSEITAAADAVFVETLQRNLREAEEAVKHGTTKRGVTLPPLPPTPPAVGGAITAVPVSAAATSPDLDGRRDLDIGGSTDIGWGGXXXXXXARPPGVLSSSLLFVRSLGRGSWRGGGGGRNAS---------RRSDVDFAELVKEAEADATASRRRELRTTAGRADIARTVLRLKA--------NAAVATAAXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTIT-------PA---------------------------AADRSAEKERKA-LADQGVQLFDLFDADGSGTIDREELHSLLEQLGIWVSAKTAREVFPRLDLDCSGDVRQEKLVAWLKDDGVASRRTPLSRMLQTRQSVQALGSSSRRLEHQVRASMLSRSRATARAEAWALLSGVPTTPXXXXXXXXXXXXXXXXGLAGPAGCHXXXXXXXXXXXXXXXXXXXXXXXXXXTRQRGSEEPTRDAGEATGAVGAAT------------GGRKRGRALAARAAERRRRTGEREKEVERELLAKRAEVEAEQRVRRNWRTQAGAAELRREVDRIRGAGEAMKLKLRTWDVDV----HTPAATLSPLTLRR--RQEEEKLRHLFRLFHASCDGCIDAEELGRLLSRMDVRLSEPEVAALLQKMDGDGSGDVDFVEFSEWWHTTGREWSTRPAALVRSAASSLAATVAPMAAARRDAXXALVSSXXXXXXXEVKAALRLEDENEAVCLLASSSSAXXXXXXXXXAAGS------ANVTGAVGDASSAAQGSLAAASIFGGTQGASG-----GDDGWGRPSP-NAERTAAARASKLARAEAEAYADVQATLRTDAGKRELARRTRAVRLEWQAAVKSAGRIAR----------GNRPRLAAGPGRDKPGERKRRRHAADASTTT------LVEFPFLQLLWGVHGSTTRGATGXXXXXXXXXXXXXXAGDGSAVEVEPSELKFLGASLRQTLVGQVTRRVPGGEQAAILGSTLALGRTVRASSASSVGGSRGPPLRAAREVRPSPAAAPHVANAAPAPATGGGEVLSMSGIFAGDSGDEIQSLKTLTR 7020
L R+RDLSTAPAWIG P LSGVDL QTQTF VD+KARPRKRRWG+DWREL+IGASPYN+AAAKARAGRRARAERGAST ADA AE+E++VS SLLG VP+EFCRDAPPA + A ++ + + D GR +SAT R +S A T GG T P Q+QQ + K+QRG +R ERSRRRLAAFLE + P + DQ FGLGGDAL PSESMTANF+GLLE SLG GVW DPVASQLARPLNA+LAYLPPEGARL ESG F P GG E+ L P E A + P G T +G AP G GRG T P ++ LLTVTME G AEEAP AVWLG+VAAVMEARGDRDEAVRLYGEAAA LTG GA+ GS GG + P A G GR GG G G G + LFPYSARAHYLAS+IER YRRHF RR AAQT A A FRGHLAR GAR+D+ R SAATFVARAWRRRM+RL +AT K QA++RGA RR+ +E+RI IR+ I+AQS VRMFLAKRT +R+RLE ASAGLLQAL RGF LRRVRA AISEIH LW+AALGLNRVARGFLHRRFAGMVRQFA+D EI R EAEA+ VG A RLA TR D+YLTTDAGK ELAQE RRAKAA R ILMRGASPE+RRRASA VF SFDLDGSGTID TEL+ LLGALG+ +T+AELK A R++RAATGMAL++RARR V+RRWV+ AR+AQVRFRE PP LEC CHQAF LYG+YWRHFGGGR E HRRR AERQWARLLDER L AG+RAEAAEEARIA KGS GA E +ALG R+ + ++LK G G + + VP+TEEA + VAR AFQAFDRDGNG LDVSDLADLLGVL+ I RP SA G+ GAAA G GLEAAM AMDED SGQ+DI EFM WF+G G P G+ PQ E+ L+VKV G GG Q E + XXXXXXXXXXXXXXXX S +V R + KS K GGVF + A W + K APAT NG + KR + XXXXXXXXXXXXXXXXXXXX GD S P SA+ + AET R A FSP R L R +++ADPWKRH KTLRAVAE+EARTLLLRRARLRAQ LAR FR TRPPE+ WSS FLE+H + V+EITA AD++FVE L RNLREAEEAV+HG +K PLPP P + A D G +T IG G A P L+ SL + GR RGGG G R+ D AE VK AE DA A+RRR +T GRA+IAR V RLKA N A A A G ++ PA A DR E+E+++ L Q QLF LFDADGSG IDREEL LL QLGIWV+AK A V WL+++G RR PLS+ML+ QSV+A GSS+RRLE QVRAS+++RSRA ARAE WA SGV P A PA X EE + E AV AAT GG++RGR LA RA RRRR E E++ EREL+ KRAE AE+R++R WRTQAGAAEL+RE DRIRGA EA+ L LR WD V T + + R ++ EEKLRH+FRLF SCDGCI AEELGRLLSRM+V +SE E+ LL +MD DGSGDVDF EFS WWH G + S RPAAL+RSAASSL A VAP+ AARRDA AL+S EVK LRLEDE+E LA ++ AAG V G SSA G + GT+G G G+ G GR NA+R AAAR+SKLARAEAEAYADVQA + T AGKRELARRTR +RLEW AA+++A IAR G+ G DK +R +R+ +T+T LVE P L+ LWG+H ST G T G++ VEPSELK++GASLR TLVG RR+ G Q +LGSTLA G R ++ G P +A E + NAA G+ LS+S IF + DEI+ LKTLTR
Sbjct: 33 LGRERDLSTAPAWIGFPGLSGVDLTQTQTFPVDKKARPRKRRWGEDWRELVIGASPYNKAAAKARAGRRARAERGASTAADARAEIEEKVSTSLLGVVPEEFCRDAPPAVEPSSSSSSLKAVTVAAGARATNSAEDAADGAGSGRRPIKIAVESSATTGSRDVSSSLAAPAATGGGDCVVAGAAHQRGLPTKASGPPYSD--QQQQHASRPKRQRGXXXXXXXXXXX----ERRNGERSRRRLAAFLEDQXXXXXXXXXXXXXXXXXXRAEEG-QPCDGSNSAVTAGRKDQTFFGLGGDALEPTPPSESMTANFVGLLEGSLGLGVWTDPVASQLARPLNAVLAYLPPEGARLFDESGRRFTP---PGGSHEAEANLPPDNEPSAAHATSP-DGRKKKTAXXXXXTTSGIKAAPTGAGRGPTTQGAACISAPGTAASSLLTVTMERGTAEEAPRAVWLGQVAAVMEARGDRDEAVRLYGEAAAELTGKRE----GASRIGSRDGSGGTASPCPPAAGKGRSAQLGGGDRGVGAGAGPD-LFPYSARAHYLASIIERTYRRHFLRRTAAQTLAAAAFRGHLARVGARKDKTHRSSAATFVARAWRRRMYRLGLATVKFQAIIRGAHGRRKAREIRILIRHTISAQSVVRMFLAKRTTQRMRLEEASAGLLQALHRGFVLRRVRATAISEIHTSLWRAALGLNRVARGFLHRRFAGMVRQFAVDGEITRCEAEAAAVGGAVRLATTRADMYLTTDAGKVELAQEMRRAKAAVVRTKILMRGASPEERRRASAHDVFDSFDLDGSGTIDHTELKALLGALGVGITNAELKVTSAAVDADGSGEISFSEFYAWFGGGGFHGGGDYGVGEALGFRGMTSDTSENWSLRSSPSLSTARSGMEESTAALTSGYRSAEGNGGPRHTARATFVKARRNLRAATGMALQDRARRSVIRRWVSLAAREAQVRFREAWPPTLECWACHQAFALYGDYWRHFGGGREEQHRRRGAERQWARLLDERSRLAAAGLRAEAAEEARIAPKGSAGAHEHAALGARLLAALSSDLKRGGGKSGSSEEEA-VPTTEEATATVARLAFQAFDRDGNGELDVSDLADLLGVLRRIAGRPPSARTALGS--GAAAAGYGLEAAMFAMDEDHSGQVDIDEFMRWFNGYDAHDGANRSTAP----GELPQRGRESEEPLYVKVL---------GVRNGATGGTNAQEDREANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTADEDDTVGARASGD-PKSAKNEKRPAA--------GGVFRVRA-WLKRK------APATT--NGSQRKQTKR----------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSVGGSNTGDGSFASPS--SANRSVAETRA-RGAPFSPRRLLGDRWS--SSTADPWKRHAKTLRAVAEQEARTLLLRRARLRAQVHELAR-----FRATRPPEYDEWSSPDFLEKHRETVAEITADADSIFVENLHRNLREAEEAVQHGLSKERSVPSPLPPPDPGISAXXXXXXXXXXALHSDGSGNL------ATAIGVDGGSVGALASSPSRLAWSLGGRKWWGR---RGGGRGTGTQVYAPGTWGERQPTADIAETVKAAERDAAAARRRAFQTPTGRAEIARAVRRLKASRVIAATSNTVAAAAEAGGEAPQTNTAQGTHEERQTVVTQVAAAGAVSEGATWGAPANAGLSEDAGAKHTASVAKLSTSLNVAGAVDRVEEREKRSPLVGQAEQLFQLFDADGSGAIDREELAPLLGQLGIWVTAKMASXXXXXXXXXXXXXXXXXXXVTWLENEGADLRRAPLSKMLRAGQSVKAGGSSTRRLESQVRASIVARSRAAARAEVWAS-SGVTPVPA-----------------AAPAVVATTASTAAIDGPHEQAKQEDPNPQKQXXXXXXGEEEKKVIDEDAVAVEAATARKEPALAVKVTGGKERGRVLATRATGRRRRFEEEERDAERELVVKRAEDVAERRIKRQWRTQAGAAELKRERDRIRGAEEALNLTLRAWDAGVSFAKEEAGVTKTDASALRETKRAEEKLRHMFRLFDVSCDGCIHAEELGRLLSRMNVPMSEAEIVGLLHEMDRDGSGDVDFCEFSAWWHKDGLKRSNRPAALIRSAASSLVAKVAPITAARRDARRALISRARAEARAEVKNVLRLEDEDEEALRLAKIATGNTASAVAADAAGEYFVAFETRVGRECGGTSSAPPGKPL---LKDGTEGLGGEGSGVGEGGEGRGDRLNAKRLAAARSSKLARAEAEAYADVQAMILTQAGKRELARRTRDLRLEWSAAIRTATSIARESGSGELGTAGSADYSYEGASHDKEEQRTQRKEQRQHATSTDTSGIPLVEAPILRFLWGLHRSTAAGVT--------------LETAGASAGVEPSELKYVGASLRSTLVGGANRRI-WGSQVTLLGSTLAKGTAGRTANIVRTSADFGLPPQAEEEAT--------LPNAARTAGVESGDALSLSTIFDDHAHDEIRDLKTLTR 2466
BLAST of mRNA_L-elsbetiae_contig641.15086.1 vs. uniprot
Match: A0A835ZFC5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFC5_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 2.570e-12 Identity = 102/357 (28.57%), Postives = 140/357 (39.22%), Query Frame = 1
Query: 1564 LFPYSARAHYLASMIERNYRRHFNRRAAAQTRAGATFRGHLARAGARRDRICRVSAATFVARAWR---------------------------RRMHRLNVATGKLQAVVRGADARRRVKELRIAIRNAITAQSGVRMFLAKRTARRLRLEVASAGLLQALQRGFALRRVRAAAISEIHGKLWQAALGLNRVARGFLHRRFAGMVRQ-----------------------------FAMDEEIERSEAEASVVGRAGRLAVTRVDIYLTTDAGKAELAQETRRAKAAAARASILMRGASPE--------KRRRASARGVFGSFDLDGSGTIDKTELQPLL--GAL--GMSVTDAELKA 2430
LFPY+ RAH+ A+ ++R RR R+AAA T A RGHL R RR R R + AT + + W R + +VA +Q++ RGA R RV+ LR AI A Q R L + AL RG+ RR +LW+AA + RG L RR+A ++R+ + E R+ EA V A A+ + + T G+ EL E R L++GA + R R AR VF + DL G G + EL+ LL GAL G DA+L+A
Sbjct: 118 LFPYAPRAHFAAAQLQRACRRRLQRKAAAATAVAAGLRGHLVRRKRRRARAVREAGATRIQKLWASLDPPLTPLCVRHRXXXXXXXXXXXXXRYQRKRHVAATAIQSLARGARDRARVRWLRAAIAAAARVQRTWRGCLGRXXXXXXXXXXXXXXXXXALARGYGTRRAXXXXXXXXQSQLWRAAARVAVAWRGRLCRRYAALLRRQEHLRMKAPRLPTPMLTLKLATRASSSRATQLAAEARRARDEAQHVRGAIAAALAKQRLRFDTPEGRQELTTELERQTVR----ETLLKGAWEKLDGAAVAAARARFRARAVFDALDLSGGGRVGARELRELLRGGALLQGYVGIDAQLRA 470
BLAST of mRNA_L-elsbetiae_contig641.15086.1 vs. uniprot
Match: UPI001C71537F (troponin C-like n=3 Tax=Penaeus TaxID=133894 RepID=UPI001C71537F) HSP 1 Score: 57.8 bits (138), Expect = 1.210e-5 Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 5656 ATLSPLTLRRRQEE---EKLRHLFRLFHASCDGCIDAEELGRLLSRMDVRLSEPEVAALLQKMDGDGSGDVDFVEFSE 5880
A L+ L EE ++L+ FR + C+G ID +L +L +D RLSE ++ A+++++D DGSG +DF EF E
Sbjct: 69 AELAAKFLMEEDEEALKKELKEAFRFYDKECNGYIDNSKLREILQELDPRLSEDDLDAIIEEVDSDGSGTLDFDEFME 146
BLAST of mRNA_L-elsbetiae_contig641.15086.1 vs. uniprot
Match: A0A818VH62_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A818VH62_9BILA) HSP 1 Score: 55.1 bits (131), Expect = 9.550e-5 Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 5686 RQEEEKLRHLFRLFHASCDGCIDAEELGRLLSRMDVRLSEPEVAALLQKMDGDGSGDVDFVEF 5874
R +E++LR F LF + G I +EL ++L + ++ +E E+ AL+ +MD DGSG +DF EF
Sbjct: 6 RNQEQQLRDAFDLFDRNRSGDISKKELKKVLKTLGIKANEKELQALINQMDADGSGKIDFNEF 68 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig641.15086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig641.15086.1 >prot_L-elsbetiae_contig641.15086.1 ID=prot_L-elsbetiae_contig641.15086.1|Name=mRNA_L-elsbetiae_contig641.15086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1254bp MEDQVSASLLGAVPKEFCRDAPPAAIEAMEMGQDNQDRSPDNRTVGRGFNback to top mRNA from alignment at L-elsbetiae_contig641:9395..35042+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig641.15086.1 ID=mRNA_L-elsbetiae_contig641.15086.1|Name=mRNA_L-elsbetiae_contig641.15086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=25648bp|location=Sequence derived from alignment at L-elsbetiae_contig641:9395..35042+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig641:9395..35042+ >mRNA_L-elsbetiae_contig641.15086.1 ID=mRNA_L-elsbetiae_contig641.15086.1|Name=mRNA_L-elsbetiae_contig641.15086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7524bp|location=Sequence derived from alignment at L-elsbetiae_contig641:9395..35042+ (Laminarionema elsbetiae ELsaHSoW15)back to top |