mRNA_L-elsbetiae_contig6396.15065.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6396.15065.1
Unique NamemRNA_L-elsbetiae_contig6396.15065.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6396.15065.1 vs. uniprot
Match: D7FHG3_ECTSI (40S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG3_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 1.520e-114
Identity = 163/178 (91.57%), Postives = 167/178 (93.82%), Query Frame = 1 
Query:    1 MGRPPANTKLGGKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKARILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYENHYGVNIGIKKGKKVAPAVEEAVAKSDHVKRKLAKRQTDRVLDPLLDEQVASGRFIACISSRPGQSGRCDGYILEGKELEFYQKQLAKKKSK 534
            MGRP ANTKLG KRVHPVRCRGGNMKYRALRLD+GNFSWGTEVCTRK RILDVVYNASNNELVRTKTLVKNAIVV+DAHPFKHWYENHYGV IG+KKGKK AP  EEAVAKSDHVKRKLAKRQTDR L  LLDEQVASGRF+ACISSRPGQSGRCDGYILEGKELEFYQK LAKKKSK
Sbjct:   29 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVVIGLKKGKKAAPVEEEAVAKSDHVKRKLAKRQTDRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 206
[Close]
BLAST of mRNA_L-elsbetiae_contig6396.15065.1 vs. uniprot
Match: A0A836CLT8_9STRA (40S ribosomal protein S8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT8_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.080e-90
Identity = 134/183 (73.22%), Postives = 150/183 (81.97%), Query Frame = 1 
Query:    1 MGRPPANTKLGGKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKARILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYENHYGVNIGIKKGK-----KVAPAVEEAVAKSDHVKRKLAKRQTDRVLDPLLDEQVASGRFIACISSRPGQSGRCDGYILEGKELEFYQKQLAKKKSK 534
            +GRP ANTK+G  R+  VRCRGGN+K+RALRL+TGN+SWGTEVCTRK RILDVVYNASNNELVRTKTLVK A+V IDA PF+ WYE HYG+ IG+KKGK     K A   +E   KSDHV+RKLA RQ  R LD LLDEQ ASGR +ACISSRPGQSGRCDGYILEGKELEFYQK L++KK K
Sbjct:   29 LGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGK 211
[Close]
BLAST of mRNA_L-elsbetiae_contig6396.15065.1 vs. uniprot
Match: A0A812SFI7_SYMMI (40S ribosomal protein S8 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SFI7_SYMMI)

HSP 1 Score: 270 bits (689), Expect = 1.100e-89
Identity = 126/176 (71.59%), Postives = 147/176 (83.52%), Query Frame = 1 
Query:    1 MGRPPANTKLGGKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKARILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYENHYGVNIGIKKGKKVAPAVEEAVAKSDHVKRKLAKRQTDRVLDPLLDEQVASGRFIACISSRPGQSGRCDGYILEGKELEFYQKQLAKKK 528
            +GRPPANTKLG  R+H VRCRGGN+K+RA+RLDTGNFSWG+EVCTRK R+LDVVYNASNNELVRTKTLVKN+I+ +DA PF+ WYE HYGV +G+KK KK A   E+   KS  ++RKLA+RQ  R LDP LD+  +SGR +ACISSRPGQSGRCDGYILEGKEL+FY K L KKK
Sbjct:   29 LGRPPANTKLGASRIHTVRCRGGNLKFRAMRLDTGNFSWGSEVCTRKTRVLDVVYNASNNELVRTKTLVKNSIIQVDATPFRAWYEQHYGVKVGVKKAKKTAAEGEDTEKKSHSLQRKLAERQKTRTLDPALDDGFSSGRLLACISSRPGQSGRCDGYILEGKELDFYSKMLKKKK 204
[Close]
BLAST of mRNA_L-elsbetiae_contig6396.15065.1 vs. uniprot
Match: D0MUS0_PHYIT (40S ribosomal protein S8 n=15 Tax=Phytophthora TaxID=4783 RepID=D0MUS0_PHYIT)

HSP 1 Score: 264 bits (675), Expect = 1.750e-87
Identity = 132/178 (74.16%), Postives = 147/178 (82.58%), Query Frame = 1 
Query:    1 MGRPPANTKLGGKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKARILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYENHYGVNIGIKKGKKVAPAVEEAVAKSDHVKRKLAKRQTDRVLDPLLDEQVASGRFIACISSRPGQSGRCDGYILEGKELEFYQKQLAKKKSK 534
            +GR PANTKLGGKRVH VR RGG++K+RAL L+TGNFSWGTEVC RK RILDVVYNASNNELVRTKTLVK A+V++DA PF+ WY+ HYGV IGIKK        EE V KSDHV RKLA RQ  RVLDP +DEQV SGR +A ISSRPGQSGR DGY+LEGKELEFYQ++LA KKSK
Sbjct:   37 LGRQPANTKLGGKRVHTVRVRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYDAHYGVKIGIKKN--TPQQQEEEVKKSDHVLRKLANRQRTRVLDPKIDEQVTSGRLLAVISSRPGQSGRADGYLLEGKELEFYQRKLATKKSK 212
[Close]
BLAST of mRNA_L-elsbetiae_contig6396.15065.1 vs. uniprot
Match: A0A7S2USH6_9STRA (40S ribosomal protein S8 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USH6_9STRA)

HSP 1 Score: 265 bits (676), Expect = 2.260e-87
Identity = 133/179 (74.30%), Postives = 147/179 (82.12%), Query Frame = 1 
Query:    1 MGRPPANTKLGGKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKARILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYENHYGVNIGIKKGKKVAP---AVEEAVAKSDHVKRKLAKRQTDRVLDPLLDEQVASGRFIACISSRPGQSGRCDGYILEGKELEFYQKQLAKKK 528
            MGRP ANTKLG KRVHPVRC GGNMKYRA+RL+ G +SWGTE  +RKARILDVVYNASNNELVRTKTLVKNA+V+IDAHPFK WYE HYGV IG KKGK++     A +E   KS HV+RK+AKRQ DR L   LD+Q   GR +ACISSRPGQSGR DGYILEGKELEFYQK LA+KK
Sbjct:   49 MGRPAANTKLGTKRVHPVRCMGGNMKYRAMRLEAGTYSWGTEAISRKARILDVVYNASNNELVRTKTLVKNAVVLIDAHPFKAWYEAHYGVVIGKKKGKRMPKKDEADDEDAKKSSHVQRKIAKRQKDRTLMQNLDDQFVGGRLLACISSRPGQSGRADGYILEGKELEFYQKMLARKK 227
[Close]
BLAST of mRNA_L-elsbetiae_contig6396.15065.1 vs. uniprot
Match: A0A6V2QD30_HETAK (40S ribosomal protein S8 n=2 Tax=Sar TaxID=2698737 RepID=A0A6V2QD30_HETAK)

HSP 1 Score: 263 bits (671), Expect = 5.440e-87
Identity = 133/176 (75.57%), Postives = 145/176 (82.39%), Query Frame = 1 
Query:    1 MGRPPANTKLGGKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKARILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYENHYGVNIGIKKGKKVAPAVEEAVAKSDHVKRKLAKRQTDRVLDPLLDEQVASGRFIACISSRPGQSGRCDGYILEGKELEFYQKQLAKKK 528
            +GR  ANTKLG KRVH VRC GGN K+RA+RL+TG FSWGTE  +RK +ILDVVYNASNNELVRTKTLVK AI+ IDA P + WYE HYGV IG KKGKK A A EEAVAKS HV RK A+R   R LDPLLDEQ A+GR +A ISSRPGQSGRCDGY+LEGKELEFYQKQLAKKK
Sbjct:   29 LGRQSANTKLGAKRVHEVRCMGGNKKFRAIRLETGTFSWGTEAISRKTKILDVVYNASNNELVRTKTLVKGAIISIDAAPLRQWYEQHYGVQIGKKKGKKAA-AEEEAVAKSSHVARKQAQRCKTRTLDPLLDEQFANGRLLASISSRPGQSGRCDGYVLEGKELEFYQKQLAKKK 203
[Close]
BLAST of mRNA_L-elsbetiae_contig6396.15065.1 vs. uniprot
Match: H3G699_PHYRM (40S ribosomal protein S8 n=2 Tax=Phytophthora TaxID=4783 RepID=H3G699_PHYRM)

HSP 1 Score: 262 bits (669), Expect = 1.030e-86
Identity = 132/178 (74.16%), Postives = 146/178 (82.02%), Query Frame = 1 
Query:    1 MGRPPANTKLGGKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKARILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYENHYGVNIGIKKGKKVAPAVEEAVAKSDHVKRKLAKRQTDRVLDPLLDEQVASGRFIACISSRPGQSGRCDGYILEGKELEFYQKQLAKKKSK 534
            +GR PA TKLGGKRVH VR RGG++K+RAL L+TGNFSWGTEVC RK RILDVVYNASNNELVRTKTLVK A+V+IDA PF+ WYE HYGV IG+KK        EE V KSDHV RKLA RQ  RVLDP +DEQV SGR +A ISSRPGQSGR DGY+LEGKELEFYQ++LA KKSK
Sbjct:   28 LGRQPAATKLGGKRVHTVRVRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLIDATPFRQWYEAHYGVKIGVKKN--AEKQEEEEVKKSDHVLRKLAARQRTRVLDPKIDEQVTSGRLLAVISSRPGQSGRADGYLLEGKELEFYQRKLATKKSK 203
[Close]
BLAST of mRNA_L-elsbetiae_contig6396.15065.1 vs. uniprot
Match: F0WM71_9STRA (40S ribosomal protein S8 n=2 Tax=Albugo TaxID=65356 RepID=F0WM71_9STRA)

HSP 1 Score: 259 bits (662), Expect = 1.320e-85
Identity = 130/178 (73.03%), Postives = 146/178 (82.02%), Query Frame = 1 
Query:    1 MGRPPANTKLGGKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKARILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYENHYGVNIGIKKGKKVAPAVEEAVAKSDHVKRKLAKRQTDRVLDPLLDEQVASGRFIACISSRPGQSGRCDGYILEGKELEFYQKQLAKKKSK 534
            +GR PANTKLGGKRVH VR RGG+ K+RALRL+TGNFSWG+E  +RK RILDVVYNASNNELVRTKTLVK+AIV IDA PF+ WYE HYGV IG KK  +    VE+   KSDHV RKLA+RQ  R+ DP LDEQ  SGR +AC+SSRPGQSGR DGYILEGKELEFYQ++LA KKSK
Sbjct:   29 LGRQPANTKLGGKRVHRVRVRGGHFKFRALRLETGNFSWGSEAVSRKTRILDVVYNASNNELVRTKTLVKSAIVSIDATPFRQWYETHYGVKIGQKKNAETTEKVEQE-KKSDHVMRKLAQRQRGRIFDPKLDEQFTSGRILACVSSRPGQSGRADGYILEGKELEFYQRKLATKKSK 205
[Close]
BLAST of mRNA_L-elsbetiae_contig6396.15065.1 vs. uniprot
Match: A0A7S1Z304_TRICV (40S ribosomal protein S8 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z304_TRICV)

HSP 1 Score: 259 bits (661), Expect = 1.640e-85
Identity = 129/175 (73.71%), Postives = 146/175 (83.43%), Query Frame = 1 
Query:    1 MGRPPANTKLGGKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKARILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYENHYGVNIGIKKGKKVAPAVEEAVAKSDHVKRKLAKRQTDRVLDPLLDEQVASGRFIACISSRPGQSGRCDGYILEGKELEFYQKQLAKK 525
            +GRP A TK+G KRVH VRCRGGN+K+RALRLD+GNFSWGTEVCTRK RILDV YNASNNELVRTKTLVK AIV+IDAHPFK WYE HYGV IG+KKG+K A A EEA  KS+ V+RKLA RQ +R L+  LD Q ASGR +A I+SRPGQ GRCDG +LEG EL FYQ+Q+AKK
Sbjct:   29 LGRPAAMTKIGEKRVHEVRCRGGNLKFRALRLDSGNFSWGTEVCTRKVRILDVTYNASNNELVRTKTLVKGAIVLIDAHPFKEWYEAHYGVKIGVKKGQK-AHADEEAPKKSERVQRKLAARQKNRTLEQPLDHQFASGRLLAKITSRPGQCGRCDGVVLEGAELHFYQRQMAKK 202
[Close]
BLAST of mRNA_L-elsbetiae_contig6396.15065.1 vs. uniprot
Match: B8CB96_THAPS (40S ribosomal protein S8 n=2 Tax=Ochrophyta TaxID=2696291 RepID=B8CB96_THAPS)

HSP 1 Score: 257 bits (657), Expect = 6.210e-85
Identity = 127/174 (72.99%), Postives = 144/174 (82.76%), Query Frame = 1 
Query:    1 MGRPPANTKLGGKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKARILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYENHYGVNIGIKKGKKVAPAVEEAVAKSDHVKRKLAKRQTDRVLDPLLDEQVASGRFIACISSRPGQSGRCDGYILEGKELEFYQKQLAK 522
            +GRP A TK+G KR+H VRCRGGN+K+RALRLD+GNFSWGTEVCTRK R+LDVVYNASNNELVRTKTLVK AIV++DAHPFK WYE+HYGV IGIKKG+  A A EE V +S HV+RKLA RQ  R L+  +D Q+ASGR  A I+SRPGQSGRCDG ILEG EL FY KQL K
Sbjct:   29 LGRPAAMTKIGEKRIHTVRCRGGNLKFRALRLDSGNFSWGTEVCTRKVRVLDVVYNASNNELVRTKTLVKGAIVLVDAHPFKSWYESHYGVKIGIKKGQ--AAAEEEEVKQSSHVQRKLAARQKGRSLEDAIDHQIASGRLYAKITSRPGQSGRCDGQILEGAELSFYLKQLKK 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6396.15065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG3_ECTSI1.520e-11491.5740S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CLT8_9STRA1.080e-9073.2240S ribosomal protein S8 n=1 Tax=Tribonema minus T... [more]
A0A812SFI7_SYMMI1.100e-8971.5940S ribosomal protein S8 n=1 Tax=Symbiodinium micr... [more]
D0MUS0_PHYIT1.750e-8774.1640S ribosomal protein S8 n=15 Tax=Phytophthora Tax... [more]
A0A7S2USH6_9STRA2.260e-8774.3040S ribosomal protein S8 n=1 Tax=Fibrocapsa japoni... [more]
A0A6V2QD30_HETAK5.440e-8775.5740S ribosomal protein S8 n=2 Tax=Sar TaxID=2698737... [more]
H3G699_PHYRM1.030e-8674.1640S ribosomal protein S8 n=2 Tax=Phytophthora TaxI... [more]
F0WM71_9STRA1.320e-8573.0340S ribosomal protein S8 n=2 Tax=Albugo TaxID=6535... [more]
A0A7S1Z304_TRICV1.640e-8573.7140S ribosomal protein S8 n=1 Tax=Trieres chinensis... [more]
B8CB96_THAPS6.210e-8572.9940S ribosomal protein S8 n=2 Tax=Ochrophyta TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6396contigL-elsbetiae_contig6396:6517..11140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.5
Seed ortholog evalue1.5e-89
Seed eggNOG ortholog2880.D7FHG3
Preferred nameRPS8
KEGG koko:K02995
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000313,GO:0000462,GO:0000956,GO:0002164,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030097,GO:0030312,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035166,GO:0035167,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043009,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043253,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2007@1,KOG3283@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Ec32 ortholog descriptionRibosomal protein S8e/ribosomal biogenesis NSA2
Ec32 orthologEc-25_002510.1
Exons5
Model size537
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6396.15065.1prot_L-elsbetiae_contig6396.15065.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6396 6517..11140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816705.7135398-CDS-L-elsbetiae_contig6396:6516..66431622816705.7135398-CDS-L-elsbetiae_contig6396:6516..6643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6396 6517..6643 +
1691683753.8129833-CDS-L-elsbetiae_contig6396:6516..66431691683753.8129833-CDS-L-elsbetiae_contig6396:6516..6643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6396 6517..6643 +
1622816705.7242632-CDS-L-elsbetiae_contig6396:8619..87171622816705.7242632-CDS-L-elsbetiae_contig6396:8619..8717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6396 8620..8717 +
1691683753.825882-CDS-L-elsbetiae_contig6396:8619..87171691683753.825882-CDS-L-elsbetiae_contig6396:8619..8717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6396 8620..8717 +
1622816705.7348688-CDS-L-elsbetiae_contig6396:9564..96601622816705.7348688-CDS-L-elsbetiae_contig6396:9564..9660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6396 9565..9660 +
1691683753.835383-CDS-L-elsbetiae_contig6396:9564..96601691683753.835383-CDS-L-elsbetiae_contig6396:9564..9660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6396 9565..9660 +
1622816705.7453616-CDS-L-elsbetiae_contig6396:10243..103751622816705.7453616-CDS-L-elsbetiae_contig6396:10243..10375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6396 10244..10375 +
1691683753.8524108-CDS-L-elsbetiae_contig6396:10243..103751691683753.8524108-CDS-L-elsbetiae_contig6396:10243..10375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6396 10244..10375 +
1622816705.7558198-CDS-L-elsbetiae_contig6396:11056..111401622816705.7558198-CDS-L-elsbetiae_contig6396:11056..11140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6396 11057..11140 +
1691683753.8718698-CDS-L-elsbetiae_contig6396:11056..111401691683753.8718698-CDS-L-elsbetiae_contig6396:11056..11140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6396 11057..11140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6396.15065.1

>prot_L-elsbetiae_contig6396.15065.1 ID=prot_L-elsbetiae_contig6396.15065.1|Name=mRNA_L-elsbetiae_contig6396.15065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MGRPPANTKLGGKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKARI
LDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYENHYGVNIGIKKGKK
VAPAVEEAVAKSDHVKRKLAKRQTDRVLDPLLDEQVASGRFIACISSRPG
QSGRCDGYILEGKELEFYQKQLAKKKSK*
back to top

mRNA from alignment at L-elsbetiae_contig6396:6517..11140+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6396.15065.1 ID=mRNA_L-elsbetiae_contig6396.15065.1|Name=mRNA_L-elsbetiae_contig6396.15065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4624bp|location=Sequence derived from alignment at L-elsbetiae_contig6396:6517..11140+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCGCCCTCCCGCAAACACCAAGCTGGGCGGCAAGCGCGTCCACCC
GGTGCGCTGCCGCGGCGGCAACATGAAGTACCGTGCGCTCAGGCTCGACA
CCGGCAACTTCAGCTGGGGTACCGAGGGTGAGAGAGATAGCCTACCTACC
AATGTATATGTAGAAGTATTTATGTGCGATATATGTTTTTAATGTACCGT
GTATGGATACATTTGTAGACCGAATGCCCGCTGCCGGTAAAGTTTGGTGT
GTAATAAAAACCAGCGTGGATCCGCGCGCCGCATGCACCCGCAGCCAGCA
CTTGCCACAGCCGCCTCTGTTGCTGTTTTGTCTGCCCTCCGCACAGTGGT
ACCGGGTATTCGTCCTTTGGGTGGTTTTTCTGCTGTTCTCGCGGGTTTTG
GTCACGGGGATGCCCTCCCCGCCGGTGTTTGCTTCACCCGGAATAGCCAT
ATTATCGGGGTATGAAGTGTATAGTATACTCCTTTACTGCACCCATCCGC
CACAGCAACTCCGTGCCTTTTGTCAAGTCGGGCTATTTTGGACGTGTCCT
CTTCGGAAAGACTCGCTCGTGGCCGCGACGAGAGTTGTGAGGAATCTTGC
AGAGGCGATCGCAGCAGTGCTCGCCGGGGAACTAAATCAAATCGTCTTTT
GGTGGTGAAGCGATGATCGTAAAAACTTGGCGCCCTCGTGGTTTGAGTCT
CCGCTGTTATATTCGGTCTTCGCGGATGGGAAGAATCAGCGTGTAGATTC
GCCACATCGAGCAGCGGCGCTCTTCGACTTGACAGTGAAGACGTTCAAGC
GACCATACTCTATGAGCTTCACATGTGCCTGACTGTCCTACCATGGCGTT
ATGTAACCAGATATTACAACGCGACAGTATTAGGAAATCATGTAGCAGCC
TTCAGAGCAGATAAACAATAGTTCATATGTGTACGAATACGAAGCGGTGA
TCGTAAAAACTTGGCGCCCTCGTGGTTTGAGTCTCCGCTGTTAAATTCGG
TCTTCGCGGATCGGAAGACTCAGCGTGTAGATTCGCCACATCGAGCAGCG
GCGCTCTTCGACTTGACAGTGAAGACGTTCAAGCGACCATACTCTATGAG
CTTCATATGTGCCTGGCTGTCCTACCATGGCGTTACGTAACCCGATATTA
CAACGCGACAGTATTAGGCAGTCATAAAGTAGCCCTCAGAGCAGATAGAC
AACAGTTCATATATGTACAAATATGAAGCCGTGATCTTAAAAACTTGGCG
CCCTCGTGGTTTGAGTCTCCGCTGCTATATTCGGTCTTCGCGGATCGGAA
GACTCAGCGTGTAGATTCGCCACATCGAGCAGCGGCGCTCTTCGACTTGA
CAGTGAAGACGTTCAAGCGACCATACTCTATGAGCTTCAAGAGTGCCTGG
CTATTCACCATTGCGTCATGTTTTCAGATACTACAGCACGACAGCATTAA
GCAGTCGTGTGGCATAGGGAAAGCCGCACTACTCCTGCGGAAGTCAGTTT
AGTATGGTCTGGCGCGTACGTAAGATATCCTAGTGTATTTCCCCTTTTTC
TTCAGCAGCGTCGAGTTTGCCCTGTTTTGTGACCACGGGCCTCCAGCAAT
GTTTTTTGTACAACGAAGAGAGCTACACACAGAGAAACAAAACTACACAC
GAAGTGTTGATCAGCAATCTTTCGTGTGGGTGTTGAGGACTGCCTTGCCG
TCGCACAATTCGCAACCCTCATGTCTGTGCTCCTTTGTTTTGTGTATTTG
TGTCCGGCCGAAGGCATGCATGTCCCCCCCCGACCACGATATCGAGTTCC
TGCAAAAACGCCCCGGCCCCTCCAGCTGATCCAAATCGAAGGCCGAAATC
TGCTTGGCGAGAGCACCGGTGTTCTTTGGTGCCTGTCTCACAGCGAGCTA
AAAGCTGGTGCCGTAAGCAGGTCAAAAGCCCACCAGCACAGCCGTCTTCG
CCCGCGACCCGAAGCTTGTACTGCTGTCTGTACCCTTCCCTGGCTTGTCC
CCCGTTGTGCACTTCGCCCAGACCCCGCCAAGTTTGTTTCCAAACCTCTC
TCGTTATTCTTGTTGTTATTCTTTCCCCTCGACCGCCGAACCAACCGACG
CAGTGTGCACCCGCAAGGCGCGTATCCTTGACGTGGTGTACAACGCCAGC
AACAACGAGCTGGTCCGCACCAAGACCCTTGTCAAGAACGCCATCGTTGT
GGTGAGTCTACAGTAGTGAGAAAGCGAGTTATCCACCTCACAAAGGTCGG
GTGGGTGGCCTCGTTTGTGTTACATTTTAGTAAGTGAGCTGCTCAGACAC
TGAACGACATCGCCGCACGTCATTCGGAGATGGGACTACCGCTGTGTGGC
ATCTCAATATGATGTGGCGTGTTGGAAATTTCACCCTTTGTACCCTCGTG
CACGGGTTCTCCTTTGGCTGCGTCTAGCACGGTTGTGCGGGGGACGCACA
CTGAATGCTGCTGATGTCTAGGAAAAAGCGCCATCCATTCCTTAATAAGC
AAAACTGAAAGTGGTTTCATCTTGTTTTCCCCGAGAGCAGTTTTGGCGGG
AAAACGGTTCCATTGATAGTCAGCAACAGCCAAAAGTACAAGTTGGAAGA
CCCTGCAAAATATATCAAACAGATGGACAGGCATATTCGGGTGCATTCTG
CTCCTGATGTTGCTCCCCGTAAAAGACGTGCGTCGAGGCACTGATGTGCA
TTGCAGCATTACGTAAACTAGAAATGTACGGGGGAGGTGACCGCTACGAC
AAAAACGCCAATTATCAACGTGTTGCGCGTCTGGCAAAGGATGTTTGGAA
GGATCATGACAAAAAAATGCCCAACCTTACACCACCCGCGACAGTCCCGT
GTACCTTGGCTGTCCAGCCCCCGGGTTTCTCCGGAGATAGCGAGGCGTTT
TGGCCTACACTACAAAAGGAGTGTGGCCGCAGAAACAAAGAGGAGCACGT
ACACAGTTTTGCAAGTTTTCAGCAGCGATTAATATTTTTCCTCACGATCG
TCCACATCCTCCTGGCTGTCTAAACAAATTTGTGTGCGCGCGCTCCAGAT
CGACGCCCACCCGTTCAAGCACTGGTACGAGAACCACTACGGCGTGAACA
TCGGCATCAAGAAGGGCAAGAAGGTCGCCCCCGCCGTCGAGGAGGTGAGG
AATACGCCAGTGGCCTACCTACATGCGCAGGGTTTGTTTTGAGCTATGTG
TGTTCAGTATTATGTTGGGATAAAGTGTGTAAATCGGAAAGGGGTTTGTG
GTCAAGAGTTCAGAGTTACCGAACCCCCGTCTTCCATTCCCTGGATAAAT
GCCATTGGTTTCCGCCGAAAAAGTCTGCTCGCAGCGTGGGTTTACATTCT
TGAATGAACACGCGCCCATGTTCCCCAACGCCTCCTTCCATCTCACGGGT
ATGGTGCCTGGTTATCGGCCGCCCTCTTCCGGTCGTGCTCCCGCCATCAA
TAGTCTTCAGCTTTCAGCGCTGAGATTGCCAAGTGTGTGTCGCATGCATA
TGTTGTACATGCCCTTGTTCTTTGTGCAAGTTCTCACCTGTAGAATGTAA
GGTTTGGTCACGTGAAGTACCGCAGCAGCAGTGTTGGAGCCAACTGTTTT
GATACAGTTCAAGTATGAGATGCTTAAAGCGTGACAAAACAATTAGGCTC
CCCAGTTTATTCGATGAAAAAAATTGAACGATCTAACATGACCGCACCCT
GTGCTGCATGTGCCGGCCGCCCCGCAGGCCGTGGCCAAGTCCGACCACGT
GAAGCGCAAGCTCGCCAAGCGCCAGACGGACCGCGTGCTGGACCCTCTCC
TGGACGAACAGGTGGCTTCCGGTCGCTTCATCGCCTGCATCTCGTCTCGC
CCCGGCCAGGTACATACTGCGCAGTCTTTGTGTTGTGACCGTTGGCCCGG
AAACATGCCGGTGTCATGTAGCGCTGTAGCGTGTTGAGTACTCTGTGGTG
TGCGAGCGCACCTCTGTCTCTCGTTGCCTCTCTGTTACAATGTGGAGGTT
CAGTTTTCAGGGGTTGGGTTGGGTTGAGCTGCTGTCTCGACATAAAGAAA
ACGTTCCGCCTGACGTGGTAGATACGCGTGGTGACTGAAAAAGGAAAACA
AATAAAATGGATCCGAAGGGTATGCGACGCGCAACTACTGAAAAGATCTG
TCGAGTTATTTCGTTTGCGAGGGAGTCAGCGGTACATGTTAAAACAGGCG
GTGAAACCCGTAACCTCAGCGATGTCGGGCCCCCGTACACGGGTACAGTC
TAGCGTTCAAAATTTAACGAATAATTTGGTCTTCTTTTTTAAGGTGGGGT
ACTCGAGCACTCTTGTTCCTTTTTGCTCTCTCCATAGATTAGCATGGTGC
ATTCCAGCTTTATTCCTCGCCCTTTGCGCGTCGCGTGATGCGCACGTCAA
GGTTGGTGCTTTTTTTTCCTTACATTGGATGCGCATACTGTTCTTGCGGC
GCAACCATATCTCATTTCGCCATACTCCCTCGAATATTTTGTCCCGCCGT
GTTTCGTGCTTGTCGCATTGCGCCGTGGAACAACAAACAGTCCGGCCGCT
GCGACGGCTACATCCTGGAGGGCAAGGAGCTTGAGTTCTACCAGAAGCAG
CTCGCCAAGAAGAAGTCCAAATAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6396:6517..11140+

>mRNA_L-elsbetiae_contig6396.15065.1 ID=mRNA_L-elsbetiae_contig6396.15065.1|Name=mRNA_L-elsbetiae_contig6396.15065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig6396:6517..11140+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCGCCCTCCCGCAAACACCAAGCTGGGCGGCAAGCGCGTCCACCC
GGTGCGCTGCCGCGGCGGCAACATGAAGTACCGTGCGCTCAGGCTCGACA
CCGGCAACTTCAGCTGGGGTACCGAGGATGGGCCGCCCTCCCGCAAACAC
CAAGCTGGGCGGCAAGCGCGTCCACCCGGTGCGCTGCCGCGGCGGCAACA
TGAAGTACCGTGCGCTCAGGCTCGACACCGGCAACTTCAGCTGGGGTACC
GAGGTGTGCACCCGCAAGGCGCGTATCCTTGACGTGGTGTACAACGCCAG
CAACAACGAGCTGGTCCGCACCAAGACCCTTGTCAAGAACGCCATCGTTG
TGTGTGCACCCGCAAGGCGCGTATCCTTGACGTGGTGTACAACGCCAGCA
ACAACGAGCTGGTCCGCACCAAGACCCTTGTCAAGAACGCCATCGTTGTG
ATCGACGCCCACCCGTTCAAGCACTGGTACGAGAACCACTACGGCGTGAA
CATCGGCATCAAGAAGGGCAAGAAGGTCGCCCCCGCCGTCGAGGAGATCG
ACGCCCACCCGTTCAAGCACTGGTACGAGAACCACTACGGCGTGAACATC
GGCATCAAGAAGGGCAAGAAGGTCGCCCCCGCCGTCGAGGAGGCCGTGGC
CAAGTCCGACCACGTGAAGCGCAAGCTCGCCAAGCGCCAGACGGACCGCG
TGCTGGACCCTCTCCTGGACGAACAGGTGGCTTCCGGTCGCTTCATCGCC
TGCATCTCGTCTCGCCCCGGCCAGGCCGTGGCCAAGTCCGACCACGTGAA
GCGCAAGCTCGCCAAGCGCCAGACGGACCGCGTGCTGGACCCTCTCCTGG
ACGAACAGGTGGCTTCCGGTCGCTTCATCGCCTGCATCTCGTCTCGCCCC
GGCCAGTCCGGCCGCTGCGACGGCTACATCCTGGAGGGCAAGGAGCTTGA
GTTCTACCAGAAGCAGCTCGCCAAGAAGAAGTCCAAATAGTCCGGCCGCT
GCGACGGCTACATCCTGGAGGGCAAGGAGCTTGAGTTCTACCAGAAGCAG
CTCGCCAAGAAGAAGTCCAAATAG
back to top