mRNA_L-elsbetiae_contig6396.15064.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6396.15064.1
Unique NamemRNA_L-elsbetiae_contig6396.15064.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6396.15064.1 vs. uniprot
Match: D7G487_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G487_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 9.070e-15
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 VPKGKIENKKASYAVGPCLLFFFLFVVVGSSIFQILK 111
            VPKGKIENKK  YAVGPCLLFFFLFVV+GSS+FQ+LK
Sbjct:   23 VPKGKIENKKTGYAVGPCLLFFFLFVVLGSSLFQVLK 59
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6396.15064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G487_ECTSI9.070e-1586.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6396contigL-elsbetiae_contig6396:27..137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionStress-associated endoplasmic reticulum protein
Ec32 orthologEc-02_001730.1
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816705.6799634-CDS-L-elsbetiae_contig6396:26..1371622816705.6799634-CDS-L-elsbetiae_contig6396:26..137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6396 27..137 -
1691683753.7974005-CDS-L-elsbetiae_contig6396:26..1371691683753.7974005-CDS-L-elsbetiae_contig6396:26..137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6396 27..137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6396.15064.1prot_L-elsbetiae_contig6396.15064.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6396 27..137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6396.15064.1

>prot_L-elsbetiae_contig6396.15064.1 ID=prot_L-elsbetiae_contig6396.15064.1|Name=mRNA_L-elsbetiae_contig6396.15064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=37bp
VPKGKIENKKASYAVGPCLLFFFLFVVVGSSIFQILK
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mRNA from alignment at L-elsbetiae_contig6396:27..137-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6396.15064.1 ID=mRNA_L-elsbetiae_contig6396.15064.1|Name=mRNA_L-elsbetiae_contig6396.15064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=111bp|location=Sequence derived from alignment at L-elsbetiae_contig6396:27..137- (Laminarionema elsbetiae ELsaHSoW15)
GTACCGAAGGGGAAGATCGAGAACAAGAAGGCGAGCTACGCGGTGGGGCC
GTGCTTGCTCTTCTTCTTTCTGTTCGTCGTCGTGGGCTCGAGCATCTTCC
AGATCTTGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6396:27..137-

>mRNA_L-elsbetiae_contig6396.15064.1 ID=mRNA_L-elsbetiae_contig6396.15064.1|Name=mRNA_L-elsbetiae_contig6396.15064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=222bp|location=Sequence derived from alignment at L-elsbetiae_contig6396:27..137- (Laminarionema elsbetiae ELsaHSoW15)
GTACCGAAGGGGAAGATCGAGAACAAGAAGGCGAGCTACGCGGTGGGGCC
GTGCTTGCTCTTCTTCTTTCTGTTCGTCGTCGTGGGCTCGAGCATCTTCC
AGATCTTGAAGGTACCGAAGGGGAAGATCGAGAACAAGAAGGCGAGCTAC
GCGGTGGGGCCGTGCTTGCTCTTCTTCTTTCTGTTCGTCGTCGTGGGCTC
GAGCATCTTCCAGATCTTGAAG
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