|
|
Homology
BLAST of mRNA_L-elsbetiae_contig6394.15062.1 vs. uniprot
Match: A0A6H5KFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE) HSP 1 Score: 178 bits (452), Expect = 4.590e-49 Identity = 99/124 (79.84%), Postives = 105/124 (84.68%), Query Frame = 2
Query: 257 MEAIESLAGMVSSMLDFPLVEFLGSLVPAGGSEAGQQVATAFGAGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYNGKGAGDSGGRGGRRYHQTDG-GRDALVVHVDGCHVAVA 625
MEAIE L GMV+S+L+FPLV FLG LVP GGSEAGQQVATA G GLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVY GAG GGRRYH+T G G A+VVHVDGCHVA+A
Sbjct: 1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGGAG----AGGRRYHRTGGDGGSAVVVHVDGCHVAMA 120
BLAST of mRNA_L-elsbetiae_contig6394.15062.1 vs. uniprot
Match: D7FI18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI18_ECTSI) HSP 1 Score: 145 bits (367), Expect = 3.320e-41 Identity = 87/126 (69.05%), Postives = 91/126 (72.22%), Query Frame = 2
Query: 257 MEAIESLAGMVSSMLDFPLVEFLGSLVPAGGSEAGQQVATAFGAGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYNGKGAGDSGGRGGRRYHQTDGGRDALV---VHVDGCHVAVA 625
MEAIE L GMV+S+L+FPLV FLG LVP GGSEAGQQVATA GLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVY GKG VHVDGCHVA+A
Sbjct: 1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVY-GKGXXXXXXXXXXXXXXXXXXXXXXXXXXVHVDGCHVAMA 125
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-00_000690.1 |
| Exons | 2 |
| Model size | 649 |
| Cds size | 393 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816705.567161-CDS-L-elsbetiae_contig6394:7790..8072 | 1622816705.567161-CDS-L-elsbetiae_contig6394:7790..8072 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6394 7791..8072 - |
| 1691683753.7254376-CDS-L-elsbetiae_contig6394:7790..8072 | 1691683753.7254376-CDS-L-elsbetiae_contig6394:7790..8072 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6394 7791..8072 - |
| 1622816705.5785553-CDS-L-elsbetiae_contig6394:9965..10076 | 1622816705.5785553-CDS-L-elsbetiae_contig6394:9965..10076 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6394 9966..10076 - |
| 1691683753.7368112-CDS-L-elsbetiae_contig6394:9965..10076 | 1691683753.7368112-CDS-L-elsbetiae_contig6394:9965..10076 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6394 9966..10076 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816705.5891473-UTR-L-elsbetiae_contig6394:10076..10332 | 1622816705.5891473-UTR-L-elsbetiae_contig6394:10076..10332 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6394 10077..10332 - |
| 1691683753.7478635-UTR-L-elsbetiae_contig6394:10076..10332 | 1691683753.7478635-UTR-L-elsbetiae_contig6394:10076..10332 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6394 10077..10332 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6394.15062.1 >prot_L-elsbetiae_contig6394.15062.1 ID=prot_L-elsbetiae_contig6394.15062.1|Name=mRNA_L-elsbetiae_contig6394.15062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MEAIESLAGMVSSMLDFPLVEFLGSLVPAGGSEAGQQVATAFGAGLDNLG
SLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYNGKGAGDSGGRGGRR
YHQTDGGRDALVVHVDGCHVAVAAAAAAAAA back to topmRNA from alignment at L-elsbetiae_contig6394:7791..10332- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6394.15062.1 ID=mRNA_L-elsbetiae_contig6394.15062.1|Name=mRNA_L-elsbetiae_contig6394.15062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2542bp|location=Sequence derived from alignment at L-elsbetiae_contig6394:7791..10332- (Laminarionema elsbetiae ELsaHSoW15)
GGCCCACCTTCGCTTCACTGTTTTTGGGTTGTTCAGCCATCCCCGGTGGC
CCACGACTCGCGATCCAACGGGGTTCACGCTTACCACCTGTGATATCCTC
TCACGAACAAGACCGCAAGGGCTGTCTCCGCTATAGACATAGACTCACTC
ACGGCAATCGCAGCTGTTCTCGTGACGTTGTCCGGCGTATTTTTCGACAC
AGAGAGAGAGACGGACGCGCACACGGGACGCGCATCACGACTAGGGAGCG
ACAGCAATGGAAGCCATCGAGTCGCTCGCGGGGATGGTTAGCAGCATGCT
CGACTTCCCGCTGGTTGAATTTCTAGGGAGTCTGGTTCCTGCAGGCGGAA
GCGAAGCCGGGCAGCAGGTGAGTCTTCTTGTGTGGTGTTTTTCAGTCGAT
GATGATTCCTGCGCACCACCCTGGCCAGGAACTTGCTCAATCTCTGGCTC
AGAGGGGCTTGCCACGCAGACCGAAAGTTGAAGTTCCCGTTGCTGCAGGA
ACACGCAGGGTGGTGGTCATCTGTAGCGCAGGCCTTGTGGTGGCCAGGAT
CGGGGCGATGGCATAATCCTGGGCTTGATCTGATCTCTCACATGGTGGTA
TTTTGGCAACACTGTTGTTGCTGCTGCCTGAACGCCCAGGTTCAAACACC
CGCTAAAAAAACTAAATTTCACTTTTACACAAAGCTGTATAATAGAAGCA
AGAGAGAAAAGCCGAGTTGCGAGGCGTTTCACGAGGTCCTGCATGCGCTA
CGCATTGCCACACCTCCAGTCGCGGTTGAATCGTCTAAAAGCGAGATGAT
ATGTGTTTAGATATGTATGTATCTGTGCAGCATAGATAGATACACACGTA
GACTGGAAAATGCACACAAGTTGGCCCGCCAGCAGCGGGAAACGCCTTGT
GACGCTGGTTGAAACTTCAACAGCCTCTTTTAAACTTAGTCAATCTGTAG
TTGTTGTCTTCACCCACTACCTCCATCTGTCTGTACCAACCCAGCACTGG
ATACTGTCGATTCCCGTGATCACGGGCTAACTGGCCCCGAGAAGGGAGGG
TATACTGACAATTTTAAATGGATCCGAAGGGTCAGAAAGCAAAAAACAAA
ATTTCAGACAGTCAGGACATGCCCCTCTCTACCTTTTGACCCCCCCTACT
TTGACACAGTGATGCTTGAGGCAGTGCTGCTTGGTGTAGAAAAAAAAAAT
AGCTGGCAAACTTTTGTGAGGGGCAACCTCTTTGCCTCTGCGTGATTTTC
AACGATGACGAGAACGCGTCGCAGACAGAACCTACTGTAGCACCGAAAGT
GGCGCGTCGAAATACACGCAGCGGCAGTCAGGAGGGACGTTTTTCTCATA
AAAGTCGCCTTCGCGCGGCGGCTTAGGCTTAGCTTCCCCCTCAACGGTTT
AGGTAGGGTGCACTGGTATATCAAAGCAGGTGATATGAGGGTCGTTCAGC
ACGTGGAATTTTGCTGCAACACGCAGTATAGGCCGAGAGCTCGTGATCGG
CGCAAAGCAATATTTGACTTCACAGCATTTTCCGCCGGATCTTTTTTTTG
TATCGAAAGAAGAGGGCATACGATATCCGCGCAAATCCAAAACTTGCTTC
GCGCCGATTGCGAGTTCTCGGCCTATACTGCGTGTTGCAGCAAAGTTCGA
ACTGCTAAGAAACCCTCACAATACACTCTTCAACATATAATATCGGCGGG
GGGTTGTGCCGCACTTTCTTTGCCAGCTATCTGCGGCATAACTGCGAAAG
TTTGTTTCGTCGGGTTTGAGGGCAATAGGGGGAGGAACTTGACAAATCGG
GGTTCATTAGACAGGAAAGACAGAACTCTACGGCCGCAGCGCCTTAGATC
TGTAAATAGTTTCGTCGCCGGACCGCACAGTAGCTGAGAGGGTGTTTCCG
ACTGGCGCCCCCTTAAACCGGCGTGCAGCTCTGCAGGTAAAAAATAAAAA
ACAACCTGGAAAAAGTCAGTATGTCAGTATCACCAACCGGGGGGATACAC
CCCCTGATCCCTGATTCTACCTTGGCTTGGTACCCGAAAATGCCGGGTTG
TTCCGTGCCGGGCTCCGCCGGTAGGGCCAGCAAATGTAGTCCTCCCCGCC
GATAATCATACCGCACACAGGATACACACAACGTTCGGACTCCCGGCCTC
CTTCTTGCGGCATTTGCCCTTCGTTTTTTCCGGCCTTGAACTCACACGCA
TGCATATGTTTACATGATACACCGCCACACTTCCTTCGTCGGCTGCCGCC
GCCGAAAAAGGTCGCCACCGCGTTCGGCGCCGGCCTCGACAACTTGGGCT
CCCTCTGCTCCCAGGCCGGGCTGGACCGATGGGAGCTCCTGGGCCTCGCG
GTGCTGTCCGCGATCACGGTGTACCGGAAGGAGCTCTCCTCCAACAGCGT
CTACAACGGCAAAGGGGCCGGCGACAGCGGCGGCCGCGGCGGCAGACGGT
ACCACCAAACAGACGGTGGCCGCGACGCGCTCGTGGTGCACGTGGATGGC
TGCCACGTAGCAGTGGCGGCAGCGGCGGCGGCCGCCGCCGCC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6394:7791..10332- >mRNA_L-elsbetiae_contig6394.15062.1 ID=mRNA_L-elsbetiae_contig6394.15062.1|Name=mRNA_L-elsbetiae_contig6394.15062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig6394:7791..10332- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGCCATCGAGTCGCTCGCGGGGATGGTTAGCAGCATGCTCGACTT
CCCGCTGGTTGAATTTCTAGGGAGTCTGGTTCCTGCAGGCGGAAGCGAAG
CCGGGCAGCAGATGGAAGCCATCGAGTCGCTCGCGGGGATGGTTAGCAGC
ATGCTCGACTTCCCGCTGGTTGAATTTCTAGGGAGTCTGGTTCCTGCAGG
CGGAAGCGAAGCCGGGCAGCAGGTCGCCACCGCGTTCGGCGCCGGCCTCG
ACAACTTGGGCTCCCTCTGCTCCCAGGCCGGGCTGGACCGATGGGAGCTC
CTGGGCCTCGCGGTGCTGTCCGCGATCACGGTGTACCGGAAGGAGCTCTC
CTCCAACAGCGTCTACAACGGCAAAGGGGCCGGCGACAGCGGCGGCCGCG
GCGGCAGACGGTACCACCAAACAGACGGTGGCCGCGACGCGCTCGTGGTG
CACGTGGATGGCTGCCACGTAGCAGTGGCGGCAGCGGCGGCGGCCGCCGC
CGCCGTCGCCACCGCGTTCGGCGCCGGCCTCGACAACTTGGGCTCCCTCT
GCTCCCAGGCCGGGCTGGACCGATGGGAGCTCCTGGGCCTCGCGGTGCTG
TCCGCGATCACGGTGTACCGGAAGGAGCTCTCCTCCAACAGCGTCTACAA
CGGCAAAGGGGCCGGCGACAGCGGCGGCCGCGGCGGCAGACGGTACCACC
AAACAGACGGTGGCCGCGACGCGCTCGTGGTGCACGTGGATGGCTGCCAC
GTAGCAGTGGCGGCAGCGGCGGCGGCCGCCGCCGCC back to top
|