mRNA_L-elsbetiae_contig6387.15053.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6387.15053.1
Unique NamemRNA_L-elsbetiae_contig6387.15053.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6387.15053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6387contigL-elsbetiae_contig6387:8162..9024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816704.8023238-CDS-L-elsbetiae_contig6387:8162..83481622816704.8023238-CDS-L-elsbetiae_contig6387:8162..8348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 8163..8348 -
1691683753.1949947-CDS-L-elsbetiae_contig6387:8162..83481691683753.1949947-CDS-L-elsbetiae_contig6387:8162..8348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 8163..8348 -
1622816704.816423-CDS-L-elsbetiae_contig6387:8940..90241622816704.816423-CDS-L-elsbetiae_contig6387:8940..9024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 8941..9024 -
1691683753.2050726-CDS-L-elsbetiae_contig6387:8940..90241691683753.2050726-CDS-L-elsbetiae_contig6387:8940..9024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 8941..9024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6387.15053.1prot_L-elsbetiae_contig6387.15053.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6387 8163..9024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6387.15053.1

>prot_L-elsbetiae_contig6387.15053.1 ID=prot_L-elsbetiae_contig6387.15053.1|Name=mRNA_L-elsbetiae_contig6387.15053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
GLVRGDERASRVHARAAPCQQQDLLGCETQRASTPADCDHSVPAARGRGA
NGPLVCLEQSKTDQRKHFARLRALSSHDRSRLNGRPIPVH
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mRNA from alignment at L-elsbetiae_contig6387:8162..9024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6387.15053.1 ID=mRNA_L-elsbetiae_contig6387.15053.1|Name=mRNA_L-elsbetiae_contig6387.15053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=863bp|location=Sequence derived from alignment at L-elsbetiae_contig6387:8162..9024- (Laminarionema elsbetiae ELsaHSoW15)
GGGTTGGTGAGAGGGGATGAGAGAGCGTCTCGTGTCCATGCCCGCGCTGC
GCCTTGCCAACAACAAGACTTGTTGGGATGTGAGGTACGTAGGAAAAGAG
TCAAGCTCGGTCCTGCCAGCGAATGTGGCGTGTCTTCTAAACGAAATCAA
TCGCGCAAAGATGCAATCGCGCAAAGATGTGTCAGCTTACCCTGCTCGTA
GCAGACCGATGTGCCGCCCTCTAGGAGACGGAGGTCAACAGCTCGAAGGC
ATCTATCTCTCGCCGCACATTTCAATTTCAAGTGATTGTTTTGAGTGCTG
ATTGTGCATGTGTGTTGCGTTTTCAACGGATGGAGAGTGGGGCAGAGCCA
AGAGCAGGTAAAATGACTCTCTATTCTTCGCTCTTCGTCAAACACAGAAT
ATGGTATATGGCCGCTGCGTCGGGAAAAAAAGCAACGCTTGGGTAATTGT
TCCTCTGTCTTTTATTTTGTGTTTCCCCGGGGGTGTTTTTATTTGTGTAC
ATTCGGTGCCTTGCGCCAGGTGTCTTGGCAGGTATGTAGATGCATACGTC
GCCGGCTGCTGTTGCCTGCTGCTGCGGCGGCGGCGGCGACGGCGGGCGGC
TAACGCTGCTGCTGCTGCTGTGTTGACCACACTCACAGAAACACCGCTTG
CTCCTCCTCGCTCTTCCCCTCTACAGACACAACGCGCGAGCACGCCTGCT
GATTGCGATCACAGCGTGCCCGCGGCTCGCGGCCGTGGGGCGAATGGACC
GCTTGTATGCCTCGAACAAAGCAAGACGGACCAAAGAAAACATTTTGCAA
GATTGAGAGCTCTTTCGTCTCACGATCGGAGCCGACTCAACGGGCGACCT
ATCCCAGTGCACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6387:8162..9024-

>mRNA_L-elsbetiae_contig6387.15053.1 ID=mRNA_L-elsbetiae_contig6387.15053.1|Name=mRNA_L-elsbetiae_contig6387.15053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig6387:8162..9024- (Laminarionema elsbetiae ELsaHSoW15)
GGGTTGGTGAGAGGGGATGAGAGAGCGTCTCGTGTCCATGCCCGCGCTGC
GCCTTGCCAACAACAAGACTTGTTGGGATGTGAGGGGTTGGTGAGAGGGG
ATGAGAGAGCGTCTCGTGTCCATGCCCGCGCTGCGCCTTGCCAACAACAA
GACTTGTTGGGATGTGAGACACAACGCGCGAGCACGCCTGCTGATTGCGA
TCACAGCGTGCCCGCGGCTCGCGGCCGTGGGGCGAATGGACCGCTTGTAT
GCCTCGAACAAAGCAAGACGGACCAAAGAAAACATTTTGCAAGATTGAGA
GCTCTTTCGTCTCACGATCGGAGCCGACTCAACGGGCGACCTATCCCAGT
GCACACACAACGCGCGAGCACGCCTGCTGATTGCGATCACAGCGTGCCCG
CGGCTCGCGGCCGTGGGGCGAATGGACCGCTTGTATGCCTCGAACAAAGC
AAGACGGACCAAAGAAAACATTTTGCAAGATTGAGAGCTCTTTCGTCTCA
CGATCGGAGCCGACTCAACGGGCGACCTATCCCAGTGCAC
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