mRNA_L-elsbetiae_contig6380.15048.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6380.15048.1
Unique NamemRNA_L-elsbetiae_contig6380.15048.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6380.15048.1 vs. uniprot
Match: D8LQT6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQT6_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 6.660e-44
Identity = 94/125 (75.20%), Postives = 104/125 (83.20%), Query Frame = 1 
Query:    1 MGGTFGKGSTPVPVYDVLGACKLGAGLEVRAYSSYVVAEVQDGGDGSEDDRFRTLAKFIGVFGNPANKVAGADSGESIAMTAPVVTGSPSLXXXXXXXXXXXXXVSPGSD-STMQFIMPKQFKKI 372
            MGG  GKGSTPVP YDVLG    GA  E+RAY  YVVAEV++ G+GSEDDRFRTLAK+IGVFGNPANKVAG D+GE+IAMTAPVVTG P+  XXXXXXXXXXXX   G+  STMQFIMPKQFK+I
Sbjct:    1 MGGVVGKGSTPVPEYDVLGH---GASYELRAYDGYVVAEVENSGEGSEDDRFRTLAKYIGVFGNPANKVAGGDAGENIAMTAPVVTGDPTPDXXXXXXXXXXXXXXXGTGTSTMQFIMPKQFKRI 122
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BLAST of mRNA_L-elsbetiae_contig6380.15048.1 vs. uniprot
Match: A0A1Y1HR99_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HR99_KLENI)

HSP 1 Score: 69.3 bits (168), Expect = 6.510e-12
Identity = 65/134 (48.51%), Postives = 83/134 (61.94%), Query Frame = 1 
Query:    1 MGGTFGKGSTPVPVYDVLGACKLGAGLEVRAYSSYVVAEVQDGGDG---SEDDRFRTLAKFIGVFGNPANKVAGA-DSGESIAMTAPVVTGSPS-------LXXXXXXXXXXXXXVSPGS--DSTMQFIMPKQF 363
            MG   G+ +   P Y V+ +   GA  EVR Y   VVAEV+  G     ++ D FRTLAK+IGVFGNP N+     +SGE IAMTAPV+T +          XXXXXXXXXXXXX S GS  +S MQF++P+++
Sbjct:    1 MGLVLGRVTVEQPKYTVVSS---GANYEVREYPPAVVAEVKYEGAAYGKNQSDPFRTLAKYIGVFGNPENESKSKPESGEKIAMTAPVITETSDPTSDKVDXXXXXXXXXXXXXXXSSGSKKESIMQFVLPEKY 131
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BLAST of mRNA_L-elsbetiae_contig6380.15048.1 vs. uniprot
Match: A0A7S1ST44_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1ST44_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 2.000e-10
Identity = 60/125 (48.00%), Postives = 70/125 (56.00%), Query Frame = 1 
Query:    1 MGGTFGKGSTPVPVYDVLGACKLGAGLEVRAYSSYVVAEV--QDGGDGSEDD--RFRTLAKFIGVFGNPANKVAGADSGESIAMTAPVVTGSPSLXXXXXXXXXXXXXVSPGSDSTMQFIMPKQF 363
            MG   GK    +P ++VL +   G   EVR Y   V  E     G DG  DD   F  LAK+IGVFGNP N     + GE+IAMTAPVVT     XXXXXXXXXXXX  S      MQF++P +F
Sbjct:    1 MGQLLGKIDVEMPAHEVL-STPPGGFYEVRKYPPAVAVETPHSTGKDGRPDDGSSFNRLAKYIGVFGNPQNTKTEGEGGETIAMTAPVVTAG-GXXXXXXXXXXXXXQDSDIHSGVMQFLLPSKF 123
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BLAST of mRNA_L-elsbetiae_contig6380.15048.1 vs. uniprot
Match: A0A0L0G533_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G533_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 6.240e-8
Identity = 41/88 (46.59%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:    1 MGGTFGKGSTPVPVYDVLGACKLGAGLEVRAYSSYVVAEVQDGGDGSEDDRFRTLAKFIGVFGNPANKVAGADSGES--IAMTAPVVT 258
            MG   GK     P Y  +     G    VR Y   V AEV       ED+ FR LAK+IGVFG P NK    +SGES  IAMTAPV+T
Sbjct:    1 MGIVLGKVDVETPKYTTVYE---GKDYAVRRYPPAVAAEVSY--KLGEDNAFRVLAKYIGVFGTPENKSTTVESGESEPIAMTAPVIT 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6380.15048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LQT6_ECTSI6.660e-4475.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Y1HR99_KLENI6.510e-1248.51Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7S1ST44_9CHLO2.000e-1048.00Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A0L0G533_9EUKA6.240e-846.59Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6380contigL-elsbetiae_contig6380:8456..11016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue1.3e-34
Seed eggNOG ortholog2880.D8LQT6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SOUL heme-binding protein
EggNOG OGs28MKZ@1,2QU4S@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionRegulatory factor, effector binding domain
Ec32 orthologEc-24_002220.1
Exons4
Model size372
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6380.15048.1prot_L-elsbetiae_contig6380.15048.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6380 8456..11016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816704.4427574-CDS-L-elsbetiae_contig6380:8455..85161622816704.4427574-CDS-L-elsbetiae_contig6380:8455..8516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6380 8456..8516 +
1691683752.9218383-CDS-L-elsbetiae_contig6380:8455..85161691683752.9218383-CDS-L-elsbetiae_contig6380:8455..8516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6380 8456..8516 +
1622816704.4532132-CDS-L-elsbetiae_contig6380:8799..89091622816704.4532132-CDS-L-elsbetiae_contig6380:8799..8909Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6380 8800..8909 +
1691683752.9447384-CDS-L-elsbetiae_contig6380:8799..89091691683752.9447384-CDS-L-elsbetiae_contig6380:8799..8909Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6380 8800..8909 +
1622816704.4665189-CDS-L-elsbetiae_contig6380:9472..95811622816704.4665189-CDS-L-elsbetiae_contig6380:9472..9581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6380 9473..9581 +
1691683752.9614358-CDS-L-elsbetiae_contig6380:9472..95811691683752.9614358-CDS-L-elsbetiae_contig6380:9472..9581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6380 9473..9581 +
1622816704.4786856-CDS-L-elsbetiae_contig6380:10924..110161622816704.4786856-CDS-L-elsbetiae_contig6380:10924..11016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6380 10925..11016 +
1691683752.9795706-CDS-L-elsbetiae_contig6380:10924..110161691683752.9795706-CDS-L-elsbetiae_contig6380:10924..11016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6380 10925..11016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6380.15048.1

>prot_L-elsbetiae_contig6380.15048.1 ID=prot_L-elsbetiae_contig6380.15048.1|Name=mRNA_L-elsbetiae_contig6380.15048.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MGGTFGKGSTPVPVYDVLGACKLGAGLEVRAYSSYVVAEVQDGGDGSEDD
RFRTLAKFIGVFGNPANKVAGADSGESIAMTAPVVTGSPSLDSGSKISMT
APVVVSPGSDSTMQFIMPKQFKKI
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mRNA from alignment at L-elsbetiae_contig6380:8456..11016+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6380.15048.1 ID=mRNA_L-elsbetiae_contig6380.15048.1|Name=mRNA_L-elsbetiae_contig6380.15048.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2561bp|location=Sequence derived from alignment at L-elsbetiae_contig6380:8456..11016+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGGAACATTCGGCAAAGGCTCGACGCCTGTGCCAGTGTACGACGT
GCTAGGTGCGTGTTTGTCGTGTCTTGTGTAGATGGAGGGAGCGGGATAGA
GCGTGGGTCACAAAGCTGCACCGACGCTCCTCTCGTGTCTTGCTGTTGTC
TGCCATCTCAAAGGCAGCAGCGACAGCGGTATCTAGCAGCGGTGTCAGTA
TCTTCTGAGGTCTAACTCTATTCTCCTGTCCAACCTTCGTGATATCCGTG
GAGGTGAGAGGTGTGCACTCCGACGTTGAACATGTACCCTGCTCGCTGTC
TTGTGCAACGTACTCCTATGAATCTATGTTGCACACACACACAGGCAAAC
TTGGGGCAGGGTTGGAGGTTCGCGCCTACAGCTCTTACGTGGTGGCCGAA
GTTCAAGACGGCGGAGACGGCTCAGAGGACGACCGTTTCAGGACACTCGC
TAAGGTGTGTGCGCGAGAAAAACCCGTCCATGAGAAGACGAATCAGGAAT
AGACACGCCCTCGCGAGGAGCACGCAGCGCGCGTGGTTCAGTCGGAGGCT
TCTTATTCCCGACACGTGTCCTCGGCGGACTATTTATCTAGATGTCTGAT
CGTATTGTTGCTGAACAATACACGTGGGCAGCACTAGGCAAACACACACA
CACACACACACACACACACAAAGGTAACGCGAACACTGCCGTCCTTATTC
TCGAGCTTTGTTCCTCCGGGCTCCTCTTTGGCACCCGGCCGCATTTAGTG
TGTTATAATATTGTGGTGTTTCCCAAAGCTCCCCCCCGGTTTACGACCAC
CACTTGCAACATGGCATCGATAACTCGCACACCGCCCCATCGACGGGCGC
TTCTGCTGCGACGTGACAGACTACTGTGTATGTGACGCCATAGACCTCTA
TAATATGGACGTGTCTTACCCTCTCCTATGTAACCTCTAACTACATACCT
AGATGCATAACTCCGCCCCTGCCCGGCCCGACCATGCGTGCGTCTCTCTG
ACGCAACACAACAACAGTTCATCGGAGTGTTCGGCAACCCCGCCAACAAG
GTCGCCGGCGCAGACTCCGGGGAGAGCATAGCAATGACCGCCCCGGTTGT
GACGGGGAGCCCGTCCCTGGACTCTGGTGAGAGCGGAACGAGGAGCTACA
CATGCACCGGATCAATGCAACGAGTGTATGTATCGGCCCGCTGAAAATAA
GCCAGACATCGGGCCCGGCTTTACAACTAGTACACCACTGACTTCCGCAC
ATGGGCGGGAGGCCAGATATATCCGCTGATACATACTTCGACCTCACCGT
CGACGAGGGAAAGGGACGGCTGAACCCTTCTCGCGACAAAAAATCTTAGG
CAAGCACCGCAGACGGGGGGGAGTGGGGGCCTTGGGGAAAGGAACCCTTC
TGTGTGACCACGGTTCACTACTCTGGCAAGGTGTCCTCGTGACACGGAGC
GCCATCGAGCACTGGAAATAAATGTGAAGAAATAAAAATAAAAATACATA
CATACATACATCTGTGAGAAACCAGAGATCCGGCAGTTCCAGCCCGTCTG
GCTTTCGCACATACGCGCGACGCCAGTAGATTCGTTTTTTGTTGTTGTCT
TCTTCACGTTCATTTCCAGTGCTCGATGGGCTCCTTCCTTACTTGGCACG
AGGGCATCTTGCCAGAGTAGTGAACCGTGGTCACACAGAAGGGTTCCTTT
CCCACAAGCCCCCCCCCCCACTCCCCCCCTTCTGCGGTGCTTGCCTAAGA
TTTTTAATGGATGTATACTGTTGTAGACAGTCCCGTTGACAGTCCCGTTG
ACAGTCCCCCACTCCCCCCTTCTGCAGTGGTTGCCTAAGTTTATTGTCGC
GAGAAGGATTCAGCCGTCCCTTTCCCTCGTCGACGGTGAGGTCGAAGTTT
GGAGTATTTATGGATATACCGGCGGGCGGGCGTGAACCTGCCTCTGTTGG
CGTAAAGGAACCCCCCTGCCAACAAACGGTACACCAATGGTCTTGGAGGT
AGCCGCGTCTTTCACGTCGGTAGGAAGAACGCAGGGTTTCCAGCCTTCAA
CCTAGTTAGGCCTTAACCCAACCCTAACCCTAACCCCAACCACCACCCAA
CCTCCCAAGCTAGGTTGGTGTGCATTGGTTAGGTTCTAGGTCGCTCTACC
CGGTCAACCAGCTTGTTGGCAGGGAGGTTCCTTCTTGCCAATGTTGGCAG
ATTCCCGGGCGCCAATATATCGGCCCGCTGAAAATAAGCCAGACATCAGG
CCCAGCCCGACTGACTTTCGCACATAAGGGCGGCGCCAGAGATCCGCTTA
TACATCCATACGTAAGAAACCAGAGAGAGATCAGGCGGGCCCAGCCCGAC
TGGCTTTCTCAGGCTGCGAGGCCCCCAGACATCATCATCATCATAGCCGG
CGATCCCCCCTCCCGAAACCCCTTTCACTCCCCCCCCCTCGTCGTCGTCG
TCGTCTTCCGTTTTTTCAGGTTCGAAGATCAGCATGACCGCACCCGTTGT
CGTGTCGCCGGGATCTGACAGCACCATGCAGTTCATCATGCCCAAGCAGT
TCAAAAAGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6380:8456..11016+

>mRNA_L-elsbetiae_contig6380.15048.1 ID=mRNA_L-elsbetiae_contig6380.15048.1|Name=mRNA_L-elsbetiae_contig6380.15048.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig6380:8456..11016+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGGAACATTCGGCAAAGGCTCGACGCCTGTGCCAGTGTACGACGT
GCTAGGTGCGTATGGGAGGAACATTCGGCAAAGGCTCGACGCCTGTGCCA
GTGTACGACGTGCTAGGTGCGTGCAAACTTGGGGCAGGGTTGGAGGTTCG
CGCCTACAGCTCTTACGTGGTGGCCGAAGTTCAAGACGGCGGAGACGGCT
CAGAGGACGACCGTTTCAGGACACTCGCTAAGGCAAACTTGGGGCAGGGT
TGGAGGTTCGCGCCTACAGCTCTTACGTGGTGGCCGAAGTTCAAGACGGC
GGAGACGGCTCAGAGGACGACCGTTTCAGGACACTCGCTAAGTTCATCGG
AGTGTTCGGCAACCCCGCCAACAAGGTCGCCGGCGCAGACTCCGGGGAGA
GCATAGCAATGACCGCCCCGGTTGTGACGGGGAGCCCGTCCCTGGACTCT
GTTCATCGGAGTGTTCGGCAACCCCGCCAACAAGGTCGCCGGCGCAGACT
CCGGGGAGAGCATAGCAATGACCGCCCCGGTTGTGACGGGGAGCCCGTCC
CTGGACTCTGGTTCGAAGATCAGCATGACCGCACCCGTTGTCGTGTCGCC
GGGATCTGACAGCACCATGCAGTTCATCATGCCCAAGCAGTTCAAAAAGA
TCGTTCGAAGATCAGCATGACCGCACCCGTTGTCGTGTCGCCGGGATCTG
ACAGCACCATGCAGTTCATCATGCCCAAGCAGTTCAAAAAGATC
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