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Homology
BLAST of mRNA_L-elsbetiae_contig638.15047.1 vs. uniprot
Match: D8LBJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBJ2_ECTSI) HSP 1 Score: 130 bits (327), Expect = 1.330e-31 Identity = 86/146 (58.90%), Postives = 101/146 (69.18%), Query Frame = 2
Query: 218 VALVLAVDGGAPLPARP-PLGSGGFIVNESST---SSSSSNVSGSGIPKSPAAAKPSKPSFVSVGIRSGCARERAATAATLRNKGVAGASAASRLRGGSTWIPHPPVKFSRADLEHSQAKTISSA-DPVSLHRPTE---SSSCNSK 631
+ L+ +VDG APL ARP P+ GFIVNE + S SS+ SGS + AAA P +PSFVSVGIRSGCARE+AAT ATLRNK AG SAASRLRGGSTWIP+PPV +D KT +SA +PVS H PT SSSC+S+
Sbjct: 10 LCLLASVDGSAPLLARPAPVQRAGFIVNEGGSKIVSGDSSSSSGSNVVTEEAAATPERPSFVSVGIRSGCAREKAATTATLRNKDRAGTSAASRLRGGSTWIPNPPVMVRESDTT---PKTHNSAAEPVSSHPPTGASGSSSCHSR 152
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | chloroplast |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-27_003780.1 |
Exons | 3 |
Model size | 1405 |
Cds size | 678 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816704.3577504-UTR-L-elsbetiae_contig638:24199..24748 | 1622816704.3577504-UTR-L-elsbetiae_contig638:24199..24748 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig638 24200..24748 - |
1691683752.8707297-UTR-L-elsbetiae_contig638:24199..24748 | 1691683752.8707297-UTR-L-elsbetiae_contig638:24199..24748 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig638 24200..24748 - |
1622816704.4055212-UTR-L-elsbetiae_contig638:30641..30819 | 1622816704.4055212-UTR-L-elsbetiae_contig638:30641..30819 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig638 30642..30819 - |
1691683752.9102788-UTR-L-elsbetiae_contig638:30641..30819 | 1691683752.9102788-UTR-L-elsbetiae_contig638:30641..30819 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig638 30642..30819 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816704.3680348-CDS-L-elsbetiae_contig638:24748..25106 | 1622816704.3680348-CDS-L-elsbetiae_contig638:24748..25106 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig638 24749..25106 - |
1691683752.8816657-CDS-L-elsbetiae_contig638:24748..25106 | 1691683752.8816657-CDS-L-elsbetiae_contig638:24748..25106 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig638 24749..25106 - |
1622816704.3781192-CDS-L-elsbetiae_contig638:29451..29674 | 1622816704.3781192-CDS-L-elsbetiae_contig638:29451..29674 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig638 29452..29674 - |
1691683752.8909013-CDS-L-elsbetiae_contig638:29451..29674 | 1691683752.8909013-CDS-L-elsbetiae_contig638:29451..29674 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig638 29452..29674 - |
1622816704.389856-CDS-L-elsbetiae_contig638:30544..30641 | 1622816704.389856-CDS-L-elsbetiae_contig638:30544..30641 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig638 30545..30641 - |
1691683752.8994265-CDS-L-elsbetiae_contig638:30544..30641 | 1691683752.8994265-CDS-L-elsbetiae_contig638:30544..30641 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig638 30545..30641 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig638.15047.1 >prot_L-elsbetiae_contig638.15047.1 ID=prot_L-elsbetiae_contig638.15047.1|Name=mRNA_L-elsbetiae_contig638.15047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=226bp
MSFRLCVVVLGVLVALVLAVDGGAPLPARPPLGSGGFIVNESSTSSSSSN VSGSGIPKSPAAAKPSKPSFVSVGIRSGCARERAATAATLRNKGVAGASA ASRLRGGSTWIPHPPVKFSRADLEHSQAKTISSADPVSLHRPTESSSCNS KGGGGGGNGDPNHNAAEFAVSKQRVVEEEEESADPLAFEDEEEEGVGGAI GGGGGGGRVGTPSIPRALKKFAWVP* back to topmRNA from alignment at L-elsbetiae_contig638:24200..30819- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig638.15047.1 ID=mRNA_L-elsbetiae_contig638.15047.1|Name=mRNA_L-elsbetiae_contig638.15047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6620bp|location=Sequence derived from alignment at L-elsbetiae_contig638:24200..30819- (Laminarionema elsbetiae ELsaHSoW15) CTTGTGACTAGCGAACGGCATACCACCACCCTGTTAAATCTATTGCGCCG
GCAATATCACCTTGAAGTTTCGGCTTGAGCAGTTTCCCCGGAATCCCTCC
TCACACCACAACAGCTAGGAGAAGAGAGAAGAGCCAGCCAAACCCAGACC
AAGAGCCGGATTATATTTGAGAAATCAGATGAGTTTTAGGCTCTGCGTCG
TCGTCCTGGGTGTCCTTGTCGCCCTCGTCTTGGCCGTGGATGGGGGCGCA
CCGCTTCCCGCTCGTCCCCCCTTGGGTAAGCGTCGTGTGCCGTCTCGCTG
ATCGTTTTATTATTTTTGAGAGGGATGGGTGTGTTGATTTCCTTCCATCT
TCAACTCCGCACCGCCTGTGTTCTCTCTCCAGAGGACCCTCTCTTTGCTC
CTCCTCTCTATTTTGGATTTTGAACGCGCAATCGAGTACTCTGTAGTGAG
GTCCGCGGGTTCGTCCCCCATCCGCGCTAGTACGCTGCACGAAGCATGCC
ATTGAGCTTAGAAATTTGCCGTATGGCTTTGCGGGTCTAATGAGGAGCTG
AACTCAAACTCGCGAACAAAAAAATATGCATATCCCCGAAGACACAGCGT
ACTATGCTGTCTGCATTAGCTTTCTGAAGAATATTTAGCACACCCGGAAT
AGAGCAGGCATTAGATATTAGTGGGCAGGTGATTTGTGATTATCTGTAAT
TAGAGACAAGACCAGGACTACAAACCAAGAAATGTCAACCCCGATCCCTG
AAGCTCCTGTTACTCTGGCGGGGGCCGTTCAGGGTGTTTATATCCCCACT
GCTGTGCTGTTGCCGCATATGTAAAAATGTAGACTAGATTATGTAGATGA
ATAATTCCCCGGTCCTAGAGATACTGCTGCTGTCGTCTCTCGTGCACACT
GGCATATGTATGCTGCTGTACATACTTCTATTTTATTGCTTATGATGCCT
ACGTACGTAGAAGCCGCGTTCCGCGACGCCACATTATGTACCTATATAGC
TATTTATTCGTCTACTCGTTACCTTTGTACTTCTATCCAATAAGAACGAC
CGGCAAAACGCTTATGATGGTAACCCCAACCCCCTCCCCCTGCTTTGTGT
GTGTTTTTTCTTGCACGATCAAACGGGGTTCTCCAACGCTGGCAGGCTCT
GGGGGGTTCATCGTCAACGAAAGCTCCACTAGCAGCAGCAGCAGCAACGT
CAGCGGCAGCGGCATTCCCAAGTCCCCGGCAGCAGCAAAGCCGAGCAAGC
CAAGCTTCGTCTCGGTGGGCATCCGGAGCGGCTGCGCCAGGGAGAGGGCG
GCGACGGCAGCGACTCTTCGGAATAAGGGCGTCGCCGGGGCATCTGCCGC
CAGCAGGCTTCGAGGGGGGTGAGTGCTAAATACATATAATATCGCATACA
GATGCGCCAATGATTTTGGGGCTGCATATACCTACCTACAGCAGTAGTTC
AGCGCTTTCAGCCAATATTGGTTAGAGGATAGGATTTTGCGAAAAATGAA
AAAAGATCTCTCAGTTCACAAAGTTTTTGCGTGTTGGTTCGTCGGTCGGC
CGACACACCGCCGTTGCATTCCTTGACGGACCAACGTTCCTCGGGGCGCT
GCGTACATCCGTGACGGTTACCCGGGGCCCCTTTCTTTCTCTTTCCGTGG
GTTGCGGCCCGTAGACAAAAATGTAAGAGCGTAGCTAGGAAGCTGACTGA
AATTCCACCGCACAAAGTTTTTGGTCGTTTTTGGAGGTAGACCTATGTAC
GGGCCAGGTCTCAAAAGCCGGAAGGCTTTCTTTCTAGGGCGGGGCTAATT
TTTCTGACCTGCTGCCAAGCACACAGAACCAAGTGCACCATATTGTACAT
CGCAAACTGGCCTTTCACTCGGCACGAAAGAGACGGGCTTAGCCAGAAAA
ACCGTATACCCTCCATACCGCCGGCGTTTGCTCGTCGCAGAGTTGCTACA
GGTCCATGCTAGCCCATAACATGCCTCTCTGCATATGGCTGGCTGTGTCT
GGCAACAATTCGCTTTCGATTTCATGAGGTGTAGGTCAAGTATTGCTGAA
TCTCCGGGTTTGAAAAGTGCTGGTTGCGGGGGTTTTGAGCTTTTTGGTGG
CGAAAGCACCGTTGCCACTTTCCTGAAAAAAAGAAAAATGTCTACCTCCA
AGTGCATCATGCTGCTCTACGTACCAAACCACCGCTGGAATTGAGGCCGG
AGATTCAGCAATACTCGGCCTACGCCTCATGAAATCGAAAGCGGATGGCT
GCCAGACACAGCCAGTCATGTGCAGAGATGTGTGGTATGGGCTAGTTTAG
ACCTACCTGTAGCAACTCTGTGACGAGCAAGCGCCGGCGGTATGGAGGGT
ATTGGTATTTTTCTGACGAACCAGCCCCTGGTTGAGCAACCACGCGTTCT
GGACTTGTATGTAGCACGAGACTGAAACCCCCTCCTGCGCACCAGGGGTT
TATTGTGAGAGGTTTAGCCTATCTTAGCTCTTTTATACCGAGGGAGAGGC
CAGCTCGCTACGGTGGGCTTGGTTCTGTGTGCTTGCCAGCAGGTCGAAAA
AATGCGCCCCCGGCGAAAAAGAGAGCCTTCCGGCTTTTGAGACCTTCTCG
CATCGAAGCGCGGTGGAAGTTCAGTCAGCTTCTAAGCTACACTTTACATG
CCAATTGTCCATACGTGACGGCTGTTTTGCGTTCCGCAGCCCGAAATTTT
GGTCGCAACAGAGGCTCTTAAACCACAATGGTATGTGTATATTGACATAT
AGGAACGTTGAACGTTGTCATTTTTGGGGTTATGTCGTTTTTTCTCCCTC
GGCACATCAGTCAGTTTTTCTGATATTTTCTTTTCCACGACTCTCAGTGG
GACCCTCGGTACATTACCTGTGACCTGCGTGTCTCGCCAGACATGGTGGT
TCGCGTGGTCACCACCTAAAACTCGCCGCACTGGCTCTATAGGAGGGGTA
AGATTTCCGAACCATAAAAGCCTCCTCCAAATGGAAACTGAGAACCAGGA
CAGTCAATTGGCAGGGCGTTGTTTTGTGGAAGCACTGCTTTGTAGCCGCA
GCATCGGATACAGCAGCATCAGCACTGTAGTATGTAGCGACAAATCAGCC
GTCGCAGCTCTACAAGAGAGCACTCGCGACACCGCGTCTTCACGCAACAC
ACGGGGCATGAGACATATCCCGCCGAGATCGGATAATCTATCGTGCATTA
ATCGGAACCCGGGCATTTTAAGCTAAACAACTGCGGTTTTTGAGGTCTAT
ATTATTTGGCTCTACTAAACCGACAGCCCTTATAAAATATAGCAGCCCAT
CCATCAACAGCGGCACTAACATGTAGTTACAAGTTTCAACAGACAAATGT
GTCCAAGATTTCAAAATTTTACTCCAAATTCATTGCGGTATCTACATTTG
GGTGATGTGTACACAGTTTATACTTCCTCTGCGTCGAGTGTGCCTTGTTT
TGTGACCACGGGCCCCCAAAGATGTTTTGGACTAGAGAGCTAATGTGAGA
AACAACAAACAACAACTACCAATTCCCCAAGGCCCGGCGAATACGTACTA
GGCATTATACTCTTGCGTCACCCCCGGGAGAACATGAACCGACCTCCCGG
AACGGGGAACCTTGTATCATACATATATATGCTCGCTGGTTCCCCTCATC
GGAGAGGATTTTCTGAGAACTGACACAAGGTTGCATTTTGTCTTGAGTCA
AACATCACACCTCATTGCGCGAGAGACAAAACGAAAATTATGCACCTCTG
CTGTGAAAAGGGTCGAACGTCTTCCACAGACTACACGAGGTTTATATCCC
TTGTAAGGGTGGCCTCCACGTTGCCCCCCCTCCTCCTTTTTGAGTCTTCT
TCTTGGCTGCTAAGCAAGATAAAGCTTTTAGGGTATTTATGTAACCGGAA
CCCAACCGGCTGGCGGCGAAGCGTTTTTTTTTTTTCACATATTTATCCTC
TGAGCGTGTTTTTCCACACTTTTTCTTCGTGTTAAACGGGTGCGCGTTAC
GTCCGGCACGTCTCAGAAGTCCCGCAATTCGATCACTACTGTTTTCGTTT
CGATTCCCCATCATGTTGTTTCCTTTGTTTTTATTCATGGAGAAAAAGTC
CTTGGCTTTTTCTTTCCTGAAAAAGAAATCATGATGGTGAGACTCGAACT
CGGGACTCTTTTATTTTATTTTTTCACGGATACCCACACGTTTAGACCCA
TGTTTACGGTCAGAAAATGTTCAAAAAATATCCGGATATGTTGTCGAACA
TTTTGGGAGAACATTTGGCGAAGGAAGATTTTCGAGGCGCTTTTTATGGG
AAACAAAATAATATCTTGGTGTTTGGTGCGAATGCACCCCGATTGCGGCT
GGACCTCTGATCTACTGCTGTCAAACGAGTCGTGGCAGGCAAATCACAAA
TGCGCCATGAGTACTGAACGTAACGAGATCGTAAAGGGCTCCCGGCAACC
GAACTATCTGTGTGCCGATAGCTCGGTCGCCAATCTGTGGCAGAAGCTCA
CCAGACGCGCAAGAAAAATTGTTTCGTGTGTCAAAAAAACACAGAAGCGT
GCGTCAGCGCTTGCTTCCCAATGGCGAAGTATCCCTGGTTCGAGGAGACG
TGCCCACGAAACTGACCAGCTCTCATCCGCTAGACCACATAATGTTCACG
TTTAGTCTTGGCTATCACCTCCATTCACTGCTTTCGTTAGGGTAGGCGTG
GGTTGGCAATGGCCTATCTCAATCGAGAGGGAAGTAGGTGCATCGCTCTG
CGAACGAAGGTGTCAAAAAAAAATATGCGGTCAATTTTATCCACTTGAAC
TTCGACTGCTTGTTTCCCCGCCTGAAAAAAGAGTTCCCAGCACACTCGAG
TACACGGCGATACGCCTCCCTCCCGTTCGAGTCAGACCACTGCCAACCCA
CGCGCACCCGAACGAAAGCAGTGAATGGAGGTGGCAGCCAACAAGACTAA
ACGTGAACACGTGGTCTAGCGGATGAGAGCTGGTTAGGTGTGTAGTCGCG
TCTCCTCTGGAACGGGGGTTTTCTCGCCGTTCGGAGACACAAAAACATGT
TTTCTCTGTGCGTTCCAAAAGACCTGTCTATTTTATTTTTTACGGCACGC
CTGACGAGCCCCCGCCATGTATCACACGCTAAAGTGTTGACACCGTGACC
CTAGGGTCCTTCCGAGCCCTCTATACGGTTGGTACGTTCAGTGTTCATCG
CGCAGTGGTTGGTTTTGACGACTTTCTGCGCCTTCAGGTTCCGCCACCTA
AACATGTTCGCGAGGTGCTCCATTTGAAAATGTTTGGCTAACATCTTCGC
AAAAGAGCGCAACTTTTGCCCCATTTGAAAAAGTTTGACAACAATTTCGG
CAAGGATTTTTTCCCATAAAAAGCGTTTGAAAATGTTCGTTGGCAAAATG
TTTGAAATTTTAAGATTTTCGGGGACATTTTCTGGCCATAAACATGGGTC
TCTCCAGTTTTTTTTTCTTTTTTTTTCCTAGATGTGAATGGATCAAACAT
ATTCGACAGACTCACTGCAGGAGGTGTACATCCCTTGTGAAGGGGACCTC
CACACCTCCGTATCATAAACTAAATATGGTATATCCTCCCCCCCCCCCCT
TTTATTTTTATCCCCTCCCCCCGCCTGAAAACAACACAAAAAAAAACTAA
ATATTGTAATTTAACACAAAACAATGTCAATTAACGATGGCAACAATTAA
AACTCGCAAACAGGTCGACCTGGATTCCTCACCCGCCGGTGAAGTTTAGC
CGGGCGGACCTGGAGCACTCGCAGGCCAAGACTATCAGCTCAGCCGACCC
GGTCAGCCTGCACCGCCCAACGGAGAGCAGCAGCTGCAACAGCAAGGGCG
GCGGCGGCGGCGGCAACGGCGACCCTAACCACAATGCGGCTGAGTTCGCC
GTCTCCAAGCAGCGCGTGGTGGAGGAGGAGGAGGAGAGCGCAGACCCCCT
CGCCTTCGAGGACGAGGAGGAAGAAGGCGTCGGTGGGGCGATCGGCGGTG
GCGGCGGCGGGGGGAGGGTCGGCACCCCCTCCATACCGCGGGCTCTGAAG
AAGTTCGCCTGGGTGCCCTGAATGGAAACCGCCGCGCGTGTCGCTTTCCA
CGGACAGCAAACAAGGGGGCAGCCACCTCGACGCGCACCACGCTCCCCTC
TTCCAAGTATGCCTCTGCGAGGCAGTGGTCTGGTGCATCAACGGCAAGGT
TGGGGGGAGGCGACGGAGAGGGAGACCCAGGAACGCGAGAAACGAGATGG
AAGCATTTGGTCGTTCCAGGGGGGTTCGCTGTTGCTCTAGGCGGGAGGAG
GCCGGCGAGGGGTGCGCGCGCATGTGAGCCAGCCGCCTGCTCCTCTGTGG
TGGTGTTTGACTGCCGTGTCACTCCCCACTCCGACGTGATCCTGTGCCAA
GGTCGTGTAGAGGGGAGGTCCTCTGGCATGCCGTCGTGTTTTTTGGAGCT
CGAAATTGTGTGTCCGTTGTTGTTCCTTGTCGAGGGAAGTGGCGATGGAT
GGTTTTGGTGTTAAAATAGAAACCATTCGATTTAAGGATTTATTCTGGTA
TGCAAAGCCAGTGTTTGTCTTGTGTCCGGCCGTTGACGCGTCGTTGCATG
GCGGATTAAGATGGGACCTG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig638:24200..30819- >mRNA_L-elsbetiae_contig638.15047.1 ID=mRNA_L-elsbetiae_contig638.15047.1|Name=mRNA_L-elsbetiae_contig638.15047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1356bp|location=Sequence derived from alignment at L-elsbetiae_contig638:24200..30819- (Laminarionema elsbetiae ELsaHSoW15) ATGAGTTTTAGGCTCTGCGTCGTCGTCCTGGGTGTCCTTGTCGCCCTCGT CTTGGCCGTGGATGGGGGCGCACCGCTTCCCGCTCGTCCCCCCTTGGATG AGTTTTAGGCTCTGCGTCGTCGTCCTGGGTGTCCTTGTCGCCCTCGTCTT GGCCGTGGATGGGGGCGCACCGCTTCCCGCTCGTCCCCCCTTGGGCTCTG GGGGGTTCATCGTCAACGAAAGCTCCACTAGCAGCAGCAGCAGCAACGTC AGCGGCAGCGGCATTCCCAAGTCCCCGGCAGCAGCAAAGCCGAGCAAGCC AAGCTTCGTCTCGGTGGGCATCCGGAGCGGCTGCGCCAGGGAGAGGGCGG CGACGGCAGCGACTCTTCGGAATAAGGGCGTCGCCGGGGCATCTGCCGCC AGCAGGCTTCGAGGGGGGCTCTGGGGGGTTCATCGTCAACGAAAGCTCCA CTAGCAGCAGCAGCAGCAACGTCAGCGGCAGCGGCATTCCCAAGTCCCCG GCAGCAGCAAAGCCGAGCAAGCCAAGCTTCGTCTCGGTGGGCATCCGGAG CGGCTGCGCCAGGGAGAGGGCGGCGACGGCAGCGACTCTTCGGAATAAGG GCGTCGCCGGGGCATCTGCCGCCAGCAGGCTTCGAGGGGGGTCGACCTGG ATTCCTCACCCGCCGGTGAAGTTTAGCCGGGCGGACCTGGAGCACTCGCA GGCCAAGACTATCAGCTCAGCCGACCCGGTCAGCCTGCACCGCCCAACGG AGAGCAGCAGCTGCAACAGCAAGGGCGGCGGCGGCGGCGGCAACGGCGAC CCTAACCACAATGCGGCTGAGTTCGCCGTCTCCAAGCAGCGCGTGGTGGA GGAGGAGGAGGAGAGCGCAGACCCCCTCGCCTTCGAGGACGAGGAGGAAG AAGGCGTCGGTGGGGCGATCGGCGGTGGCGGCGGCGGGGGGAGGGTCGGC ACCCCCTCCATACCGCGGGCTCTGAAGAAGTTCGCCTGGGTGCCCTGAGT CGACCTGGATTCCTCACCCGCCGGTGAAGTTTAGCCGGGCGGACCTGGAG CACTCGCAGGCCAAGACTATCAGCTCAGCCGACCCGGTCAGCCTGCACCG CCCAACGGAGAGCAGCAGCTGCAACAGCAAGGGCGGCGGCGGCGGCGGCA ACGGCGACCCTAACCACAATGCGGCTGAGTTCGCCGTCTCCAAGCAGCGC GTGGTGGAGGAGGAGGAGGAGAGCGCAGACCCCCTCGCCTTCGAGGACGA GGAGGAAGAAGGCGTCGGTGGGGCGATCGGCGGTGGCGGCGGCGGGGGGA GGGTCGGCACCCCCTCCATACCGCGGGCTCTGAAGAAGTTCGCCTGGGTG CCCTGA back to top
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