mRNA_L-elsbetiae_contig6378.15041.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6378.15041.1
Unique NamemRNA_L-elsbetiae_contig6378.15041.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6378.15041.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.120e-23
Identity = 74/149 (49.66%), Postives = 91/149 (61.07%), Query Frame = 2
Query:  368 IKLLIEAGANSNSRRFDGVTPLHVAADMGHVNAIKLLLRAKANPLLTFVRPSGHTH-VPLDVAAK-GHLEVVRELIQQRGQRLCWCKRRCRCPHRGGRGGH-----------IDIMAMLMDAGVVDKGQALISAAGCGGEAAVKFLLQH 775
            +  L++AG+N N+RR DG TPL+ AA  G+V A+ LLL AKA+PLLT    SG    +PLDVAA+ GH EVV ELI+Q G   C           G  GG            +DIMA+L DAGVVD G AL+ AAG GGEA +KFLL+ 
Sbjct:  131 VTALLKAGSNINTRRSDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCG----------GSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQ 269          
BLAST of mRNA_L-elsbetiae_contig6378.15041.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 6.130e-22
Identity = 68/130 (52.31%), Postives = 86/130 (66.15%), Query Frame = 2
Query:  395 NSNSRRFDGVTPLHVAADMGHVNAIKLLLRAKANPLLTFVR-PSGHTHVPLDVAAK-GHLEVVRELIQQRGQRLCW-CKRRCRCPHRGGRGGHIDIMAMLMDAGVVDKGQALISAAGCGGEAAVKFLLQH 775
            N NSRR DG TPL+ AA  G+V+A +LLL AKA+PLLT V  PSG T +PLD AA+ GH EVV ELI+Q G   C       R   +  +  +++IM +L +AGVVD G AL+ AAG GGE  +KFLL+ 
Sbjct:  140 NLNSRRSDGATPLYTAAWKGNVDAARLLLLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQ 269          
BLAST of mRNA_L-elsbetiae_contig6378.15041.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 9.320e-21
Identity = 65/126 (51.59%), Postives = 81/126 (64.29%), Query Frame = 2
Query:  416 DGVTPLHVAADMGHVNAIKLLLRAKANPLLTFVRPSGHTH-VPLDVAAK-GHLEVVRELIQQRGQRLCWCKRRCRCPHR---GGRGGHIDIMAMLMDAGVVDKGQALISAAGCGGEAAVKFLLQHK 778
            DG T LH+AA+ G V  ++ LLR  ANPLL    P G+T  VPLD+AAK GH +VVRELIQ+ G  +  C       H         H+DIMA+L +AGVVD G+AL  AAG G EA+VKFLL+H+
Sbjct:  239 DGSTALHIAAEEGQVAVMRELLRGNANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELG--IEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHR 362          
BLAST of mRNA_L-elsbetiae_contig6378.15041.1 vs. uniprot
Match: D7FXF2_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF2_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.360e-19
Identity = 59/140 (42.14%), Postives = 79/140 (56.43%), Query Frame = 2
Query:  365 LIKLLIEAGANSNSRRFDGVTPLHVAADMGHVNAIKLLLRAKANPLLTFVR--PSGHTHVPLDVAAKG-HLEVVRELIQQRGQRLCWCKRRCRCPHRGGRGGHIDIMAMLMDAGVVDKGQALISAAGCGGEAAVKFLLQH 775
            +++ +++AG N + R   G T L  AA  G ++ +++LL A ANPLLT     P G   V LD AA+G H  VVR +I   G   C           G     +D+MA+L+D GVVD G AL+ AA CG EA+VKFLLQ 
Sbjct:   30 VMRAMVKAGVNVDRRHHSGATALSAAASDGQLDIVEVLLGANANPLLTTPNSLPGGPPLVALDAAARGGHAVVVRRMIGHLGIEGCG----------GATNQRMDVMAILVDVGVVDNGYALVGAAACGAEASVKFLLQQ 159          
BLAST of mRNA_L-elsbetiae_contig6378.15041.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 3.280e-19
Identity = 61/117 (52.14%), Postives = 77/117 (65.81%), Query Frame = 2
Query:  377 LIEAGANSNSRRFDGVTPLHVAADMGHVNAIKLLLRAKANPLLT-FVRPSGHTHVPLDVAAK-GHLEVVRELIQQRGQRLCW-CKRRCRCPHRGGRGGHIDIMAMLMDAGVVDKGQA 718
            L+EAGAN NSRRFDG TPL +AA  G+V+A++LLL AK +PLLT  +  S    +PLDVAA  GHLEVV ELI+Q G   C       R   +  R  H+D++ +L +AGVVD G A
Sbjct:   36 LLEAGANLNSRRFDGATPLFLAAWEGNVDAVRLLLLAKVDPLLTPHLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVVDTGLA 152          
BLAST of mRNA_L-elsbetiae_contig6378.15041.1 vs. uniprot
Match: D7G1I8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I8_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 8.920e-19
Identity = 56/117 (47.86%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    1 PRATMNEGLHFAACNGLTQRTVSLLLGGVVDIDQGGVDGFTPLMLAAGRGHLRIVEILLNKGANVTAVGGLGGSALHGSVQGGYLAVTKLLLKAGAGLEVAMPTEGCTPLHLAAEHG 351
            PR   NE LHFAA  G TQRT ++L  G+++I+QG  DG+TPLM+A+ RG+ RIV IL+ +GANV  V  LG +A                  AGA LE A  T G  PLHLAA+ G
Sbjct:   10 PRGPKNE-LHFAADTGSTQRTAAILSSGLININQGDPDGWTPLMVASQRGYTRIVRILVKEGANVLIVADLGFTAXXXXXXXXXXXXXXXXXNAGADLEAATSTNGSRPLHLAADKG 125          
BLAST of mRNA_L-elsbetiae_contig6378.15041.1 vs. uniprot
Match: A0A6H5KEI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.160e-16
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 2
Query:  425 TPLHVAADMGHVNAIKLLLRAKANPLLTFVRP-SGHTHVPLDVAAK-GHLEVVRELIQQRGQRLCW--CKRRCRCPHRGGRGGHIDIMAMLMDAGVVDK-GQALISAAGCGGEAAVKFLLQHK 778
            TPL++AA  GH+ A+K+LL AKANPLLT     SG + VPL+VAA+ G   VVREL+++ G R C     R           G +DIM+++M AGVVD  G AL++A G G EAAV FLL+ +
Sbjct:   14 TPLYIAAMQGHLGAVKVLLHAKANPLLTRSSECSGRSFVPLEVAAQTGRSAVVRELLREFGIRCCGGPSGRLLDALRVAAVYGQVDIMSIIMGAGVVDPVGLALLAAVGSGKEAAVGFLLRQQ 136          
BLAST of mRNA_L-elsbetiae_contig6378.15041.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.660e-15
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   25 LHFAACNGLTQRTVSLLLGGVVDIDQGGVD-GFTPLMLAAGRGHLRIVEILLNKGANVTAVGGLGGSALHGSVQGGYLAVTKLLLKAGAGLEVAMPTEGCTPLHLAAEHG 351
            L+ AA +G  +RTV++L  G V+ID G  D G TPLM A+  G+LR+V +LL  GA V+     G +ALH S+   +LAV+K L+KAGAG+E A   +G TPLH+AA  G
Sbjct:    8 LYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVE-ARGVDG-TPLHVAAAKG 115          
BLAST of mRNA_L-elsbetiae_contig6378.15041.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.780e-15
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   25 LHFAACNGLTQRTVSLLLGGVVDIDQGGVD-GFTPLMLAAGRGHLRIVEILLNKGANVTAVGGLGGSALHGSVQGGYLAVTKLLLKAGAGLEVAMPTEGCTPLHLAAEHG 351
            L+ AA +G  +RTV++L  G VDID G  D G TPLM A+  G+LR+V +LL  GA V+     G +ALH S+   +LAV++ L+KAGAG+E A   +G TPLH+AA  G
Sbjct:    8 LYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVE-ARGVDG-TPLHVAAAKG 115          
BLAST of mRNA_L-elsbetiae_contig6378.15041.1 vs. uniprot
Match: D8LNF8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.760e-14
Identity = 65/181 (35.91%), Postives = 84/181 (46.41%), Query Frame = 2
Query:  371 KLLIEAGANSNSRRFDGVTPLHVAADMG---------------------------------HVNAIKLLLRAKANPLLTFVRPSGHTHVPLDVAAK-GHLEVVRELIQQRGQRLCWCKRRCRCPHRGGRGG-----------HIDIMAMLMDAGVVDKGQALISAAGCGGEAAVKFLLQHK 778
            K+L++AGA+  +   +G TPLH+ AD G                                          RAKANPLLT    SG T VPLD AA+ G  EVV+EL+QQ   + C           G  GG           ++D+MA+L D GV+D G+ALI+AAG   EA VK LLQ +
Sbjct:  101 KMLLKAGADFEAVTSEGETPLHLVADSGCWEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKANPLLTKPTSSGVTFVPLDTAAEYGQTEVVQELVQQVSIKGCG----------GASGGVDALRLAALSQNVDVMAVLADVGVMDTGEALITAAGRNDEAGVKLLLQQR 271          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6378.15041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQV0_9PHAE2.120e-2349.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJA9_9PHAE6.130e-2252.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT11_ECTSI9.320e-2151.59EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FXF2_ECTSI1.360e-1942.14EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FXY7_ECTSI3.280e-1952.14EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1I8_ECTSI8.920e-1947.86EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KEI1_9PHAE3.160e-1648.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G449_ECTSI2.660e-1549.09EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G2C8_ECTSI3.780e-1549.09EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LNF8_ECTSI1.760e-1435.91EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6378contigL-elsbetiae_contig6378:3797..4574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog2880.D8LNF8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size778
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6378.15041.1prot_L-elsbetiae_contig6378.15041.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6378 4203..4562 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.833396-UTR-L-elsbetiae_contig6378:3796..42021622816703.833396-UTR-L-elsbetiae_contig6378:3796..4202Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6378 3797..4202 -
1691683752.470593-UTR-L-elsbetiae_contig6378:3796..42021691683752.470593-UTR-L-elsbetiae_contig6378:3796..4202Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6378 3797..4202 -
1622816703.862037-UTR-L-elsbetiae_contig6378:4562..45741622816703.862037-UTR-L-elsbetiae_contig6378:4562..4574Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6378 4563..4574 -
1691683752.4910412-UTR-L-elsbetiae_contig6378:4562..45741691683752.4910412-UTR-L-elsbetiae_contig6378:4562..4574Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6378 4563..4574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.849196-CDS-L-elsbetiae_contig6378:4202..45621622816703.849196-CDS-L-elsbetiae_contig6378:4202..4562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6378 4203..4562 -
1691683752.48222-CDS-L-elsbetiae_contig6378:4202..45621691683752.48222-CDS-L-elsbetiae_contig6378:4202..4562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6378 4203..4562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6378.15041.1

>prot_L-elsbetiae_contig6378.15041.1 ID=prot_L-elsbetiae_contig6378.15041.1|Name=mRNA_L-elsbetiae_contig6378.15041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MNEGLHFAACNGLTQRTVSLLLGGVVDIDQGGVDGFTPLMLAAGRGHLRI
VEILLNKGANVTAVGGLGGSALHGSVQGGYLAVTKLLLKAGAGLEVAMPT
EGCTPLHLAAEHGKPAVVN*
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mRNA from alignment at L-elsbetiae_contig6378:3797..4574-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6378.15041.1 ID=mRNA_L-elsbetiae_contig6378.15041.1|Name=mRNA_L-elsbetiae_contig6378.15041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=778bp|location=Sequence derived from alignment at L-elsbetiae_contig6378:3797..4574- (Laminarionema elsbetiae ELsaHSoW15)
CCTCGAGCGACAATGAACGAGGGGTTGCACTTTGCTGCTTGTAATGGTTT AACCCAGCGCACGGTAAGCCTGCTCTTGGGGGGAGTTGTCGACATTGACC AAGGCGGCGTGGACGGCTTTACGCCTCTCATGCTCGCCGCCGGCAGAGGT CACCTGCGCATTGTCGAGATCCTTCTGAACAAAGGCGCCAACGTGACAGC TGTCGGTGGACTCGGTGGTTCTGCACTGCATGGCTCGGTCCAAGGAGGAT ACCTTGCCGTGACAAAGCTGCTGTTGAAGGCCGGCGCTGGCCTGGAGGTG GCGATGCCTACTGAAGGCTGCACACCGCTTCACCTGGCTGCGGAGCACGG AAAGCCCGCGGTGGTTAATTAAATTGCTGATCGAGGCAGGGGCGAATTCC AACAGCCGAAGGTTCGACGGTGTGACACCGCTGCACGTCGCGGCTGATAT GGGACACGTGAATGCGATCAAGTTGCTTCTTCGTGCGAAAGCGAACCCGC TGTTGACGTTTGTGCGTCCGTCGGGGCACACGCATGTCCCTCTAGATGTA GCGGCGAAAGGGCACTTGGAGGTGGTACGCGAGCTGATCCAGCAGCGGGG TCAAAGGTTGTGCTGGTGCAAGCGGCGGTGTAGATGCCCTCACCGCGGCG GCCGCGGGGGGCATATTGACATCATGGCCATGCTGATGGACGCCGGAGTC GTAGATAAGGGCCAAGCACTCATCTCCGCAGCGGGATGTGGCGGTGAGGC GGCGGTGAAGTTTCTGTTGCAGCATAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6378:3797..4574-

>mRNA_L-elsbetiae_contig6378.15041.1 ID=mRNA_L-elsbetiae_contig6378.15041.1|Name=mRNA_L-elsbetiae_contig6378.15041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig6378:3797..4574- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGAGGGGTTGCACTTTGCTGCTTGTAATGGTTTAACCCAGCGCAC
GGTAAGCCTGCTCTTGGGGGGAGTTGTCGACATTGACCAAGGCGGCGTGG
ACGGCTTTACGCCTCTCATGCTCGCCGCCGGCAGAGGTCACCTGCGCATT
GTCGAGATCCTTCTGAACAAAGGCGCCAACGTGACAGCTGTCGGTGGACT
CGGTGGTTCTGCACTGCATGGCTCGGTCCAAGGAGGATACCTTGCCGTGA
CAAAGCTGCTGTTGAAGGCCGGCGCTGGCCTGGAGGTGGCGATGCCTACT
GAAGGCTGCACACCGCTTCACCTGGCTGCGGAGCACGGAAAGCCCGCGGT
GGTTAATTAAATGAACGAGGGGTTGCACTTTGCTGCTTGTAATGGTTTAA
CCCAGCGCACGGTAAGCCTGCTCTTGGGGGGAGTTGTCGACATTGACCAA
GGCGGCGTGGACGGCTTTACGCCTCTCATGCTCGCCGCCGGCAGAGGTCA
CCTGCGCATTGTCGAGATCCTTCTGAACAAAGGCGCCAACGTGACAGCTG
TCGGTGGACTCGGTGGTTCTGCACTGCATGGCTCGGTCCAAGGAGGATAC
CTTGCCGTGACAAAGCTGCTGTTGAAGGCCGGCGCTGGCCTGGAGGTGGC
GATGCCTACTGAAGGCTGCACACCGCTTCACCTGGCTGCGGAGCACGGAA
AGCCCGCGGTGGTTAATTAA
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