mRNA_L-elsbetiae_contig6376.15037.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6376.15037.1
Unique NamemRNA_L-elsbetiae_contig6376.15037.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6376.15037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6376contigL-elsbetiae_contig6376:1203..1610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.6508167-UTR-L-elsbetiae_contig6376:1202..12891622816703.6508167-UTR-L-elsbetiae_contig6376:1202..1289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6376 1203..1289 +
1691683752.3525834-UTR-L-elsbetiae_contig6376:1202..12891691683752.3525834-UTR-L-elsbetiae_contig6376:1202..1289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6376 1203..1289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.6710777-CDS-L-elsbetiae_contig6376:1289..16101622816703.6710777-CDS-L-elsbetiae_contig6376:1289..1610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6376 1290..1610 +
1691683752.3630733-CDS-L-elsbetiae_contig6376:1289..16101691683752.3630733-CDS-L-elsbetiae_contig6376:1289..1610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6376 1290..1610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6376.15037.1prot_L-elsbetiae_contig6376.15037.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6376 1290..1610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6376.15037.1

>prot_L-elsbetiae_contig6376.15037.1 ID=prot_L-elsbetiae_contig6376.15037.1|Name=mRNA_L-elsbetiae_contig6376.15037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MWRRDGAEGVDPQRRLAFAPAVGLSPDPLLPLLLLPSHVPPVLTKPPPPP
LVVVDMDGGRALGLPAPLLARRRKCSSSVNLRRLLVVACRPPPAAATAGA
AGAPADA
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mRNA from alignment at L-elsbetiae_contig6376:1203..1610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6376.15037.1 ID=mRNA_L-elsbetiae_contig6376.15037.1|Name=mRNA_L-elsbetiae_contig6376.15037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig6376:1203..1610+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGATACCGCAGGATAATCTTCTTCTTCTTCCTCCCGACCGCTGCCGAC
GCGGTCGAGAGCGCTCGTGGAGTTGGCCCTGCGGAGCATGTGGCGTCGGG
ACGGGGCGGAGGGTGTCGACCCCCAACGCAGGCTCGCTTTCGCTCCGGCT
GTGGGCCTGAGCCCTGACCCGCTGCTGCCGCTGCTGTTGCTGCCGTCGCA
CGTACCGCCGGTGCTGACAAAACCACCACCACCACCATTGGTGGTAGTAG
ACATGGATGGCGGGAGAGCATTAGGGCTGCCGGCCCCGCTGCTGGCACGG
CGGCGGAAGTGCAGCAGCTCCGTGAATCTCCGACGCTTGCTCGTTGTGGC
GTGTCGGCCGCCGCCCGCTGCCGCGACGGCGGGCGCCGCGGGTGCTCCGG
CGGACGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6376:1203..1610+

>mRNA_L-elsbetiae_contig6376.15037.1 ID=mRNA_L-elsbetiae_contig6376.15037.1|Name=mRNA_L-elsbetiae_contig6376.15037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig6376:1203..1610+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCGTCGGGACGGGGCGGAGGGTGTCGACCCCCAACGCAGGCTCGC
TTTCGCTCCGGCTGTGGGCCTGAGCCCTGACCCGCTGCTGCCGCTGCTGT
TGCTGCCGTCGCACGTACCGCCGGTGCTGACAAAACCACCACCACCACCA
TTGGTGGTAGTAGACATGGATGGCGGGAGAGCATTAGGGCTGCCGGCCCC
GCTGCTGGCACGGCGGCGGAAGTGCAGCAGCTCCGTGAATCTCCGACGCT
TGCTCGTTGTGGCGTGTCGGCCGCCGCCCGCTGCCGCGACGGCGGGCGCC
GCGGGTGCTCCGGCGGACGCTATGTGGCGTCGGGACGGGGCGGAGGGTGT
CGACCCCCAACGCAGGCTCGCTTTCGCTCCGGCTGTGGGCCTGAGCCCTG
ACCCGCTGCTGCCGCTGCTGTTGCTGCCGTCGCACGTACCGCCGGTGCTG
ACAAAACCACCACCACCACCATTGGTGGTAGTAGACATGGATGGCGGGAG
AGCATTAGGGCTGCCGGCCCCGCTGCTGGCACGGCGGCGGAAGTGCAGCA
GCTCCGTGAATCTCCGACGCTTGCTCGTTGTGGCGTGTCGGCCGCCGCCC
GCTGCCGCGACGGCGGGCGCCGCGGGTGCTCCGGCGGACGCT
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