mRNA_L-elsbetiae_contig6362.15024.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6362.15024.1
Unique NamemRNA_L-elsbetiae_contig6362.15024.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6362.15024.1 vs. uniprot
Match: D8LM71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM71_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 1.990e-90
Identity = 231/472 (48.94%), Postives = 284/472 (60.17%), Query Frame = 1 
Query:   10 QNEQLSKKLAARPVMAPGLERTLLEAHLRLLLGKLGVTSGAGLGKGGLAATAPGSGGVS----------GGEQPHTFRDSHLGRGKPGSTRVCCAPAEGCP-KDASPRRK--HGLSSAVRQSSGSSSGSNNSAPNTPCIPLDTHQDRAVFEFISAGGDSSS---------------------SEVVSVRDGGSRPETGRRPGSSRSARSAPECLESGKCLSIATIDTALGELRAAFEEEAQGLLEEVADLTDLLEDEAVRKADGERRTRRNL-PSACDNDVRGNNTNISSSCGGGGSGGPIPSSELRRFGKKLEEAVRSREHAAEVTQRLAKTDKKLLPRNSKRVSVISSSLRSTG-GAVIGGKEGVRSK--GWAAPPVRGGGAYADEIDGKGYR--SGRNR-PSL--KSASGCLRGRAGSDDMAAAAAAAMRQATRQSGGRGRERGVLASKLRGAVRSSRDQ-AVDDEKFW 1293
            QN+Q  +K+AARP MAPGLERTLLEAHLRLLLGKLGV SG   GKGGLA+ +P S              G  +PHTFR+  L R    STR CCA   G P +D+SPRRK  +G  ++  +          S P TP +PL+T QDRAV+EF+S  G+                        SE  +V +  SRP TGRRPGSSRSARSAPECLESG+C+++ATIDTALGELRAAFEEEAQ LLEEVADLT LLEDEA  KAD ER++RR+L P A D    G  +N +++     +  PIPSSELRR+GKKLEEAVRSREHAA+V QRLA      LPR            R+ G     GGK+G +    G    PV      ++++ G   R  S R+R P +  K++ G   G  GS       A    +A  + GG G ERG LA+KLRGAVR+SR++  VDD+K+W
Sbjct:   41 QNKQTWQKIAARPTMAPGLERTLLEAHLRLLLGKLGVPSGNQGGKGGLASMSPSSXXXXXXXXXXXXXVGRPRPHTFREDDLCRRS--STRPCCATTAGSPGEDSSPRRKCLNGRKASYARXXXXXXXXC-SEPTTPYVPLETQQDRAVYEFLSTSGECDGLSGGAAGRGGNGTHGEAERGGSEGAAVGNSRSRPGTGRRPGSSRSARSAPECLESGRCVTVATIDTALGELRAAFEEEAQNLLEEVADLTGLLEDEAAVKADDERQSRRHLGPKAGD---YGGKSNAAAAA----ANDPIPSSELRRYGKKLEEAVRSREHAADVAQRLA------LPRQ-----------RAPGLEPGCGGKDGKKKGRGGMTVAPVSRSSRSSEDLPGSTARLESSRHRGPGVGRKASIGRGSGSIGSGPSVEDKARGEDKAVGRRGGGG-ERGALATKLRGAVRASREEEVVDDDKYW 484
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BLAST of mRNA_L-elsbetiae_contig6362.15024.1 vs. uniprot
Match: A0A6H5KD29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD29_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.550e-22
Identity = 101/229 (44.10%), Postives = 126/229 (55.02%), Query Frame = 1 
Query:  628 QGLLEEVADLTDLLEDEAVRKADGERRTRRNL-PSACDNDVRGNNTNISSSCGGGGSGGPIPSSELRRFGKKLEEAVRSREHAAEVTQRLAKTDKKLLPRNSKRVSVISSSLRSTGGAVIGGKEGVRSKGWAAPPVRGGGAYADEIDGKGYR--SGRNRP---SLKSASGCLRGRAGSDDMAAAAAAAMRQATRQSGGRGRERGVLASKLRGAVRSSRDQAV-DDEKFW 1293
            + LLEEVADLT LLEDEA  KAD ERR+RR+L P   D+   G  +N +++         IPSSELRR+GKKLEEAVRSREHAA V QRLA      LPR        +  L +  G   G K+G    G    PV      + ++ G   R  S R+R      K++ G   G  GS       A    +A  + GG G ERG LA+KLRG VR+SR++ V DD+KFW
Sbjct:   57 KNLLEEVADLTGLLEDEAAVKADDERRSRRHLGPKVGDS---GGTSNAAAN-------DSIPSSELRRYGKKLEEAVRSREHAAGVAQRLA------LPRQR------APGLETGCGGKDGRKKG--RGGTTVAPVSRSSRCSQDLPGSAVRLQSSRHRGPGGGRKASIGRGSGSIGSGPSVEDKAPGEDKAVGRRGGGG-ERGALATKLRGTVRASREEEVADDDKFW 260
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6362.15024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM71_ECTSI1.990e-9048.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD29_9PHAE5.550e-2244.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6362contigL-elsbetiae_contig6362:2665..5113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1299
Cds size1299
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6362.15024.1prot_L-elsbetiae_contig6362.15024.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6362 2665..5113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816702.4902735-CDS-L-elsbetiae_contig6362:2664..29391622816702.4902735-CDS-L-elsbetiae_contig6362:2664..2939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6362 2665..2939 +
1691683751.4946566-CDS-L-elsbetiae_contig6362:2664..29391691683751.4946566-CDS-L-elsbetiae_contig6362:2664..2939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6362 2665..2939 +
1622816702.502614-CDS-L-elsbetiae_contig6362:3274..35291622816702.502614-CDS-L-elsbetiae_contig6362:3274..3529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6362 3275..3529 +
1691683751.5097215-CDS-L-elsbetiae_contig6362:3274..35291691683751.5097215-CDS-L-elsbetiae_contig6362:3274..3529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6362 3275..3529 +
1622816702.513031-CDS-L-elsbetiae_contig6362:3902..40021622816702.513031-CDS-L-elsbetiae_contig6362:3902..4002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6362 3903..4002 +
1691683751.5187638-CDS-L-elsbetiae_contig6362:3902..40021691683751.5187638-CDS-L-elsbetiae_contig6362:3902..4002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6362 3903..4002 +
1622816702.5242903-CDS-L-elsbetiae_contig6362:4345..48631622816702.5242903-CDS-L-elsbetiae_contig6362:4345..4863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6362 4346..4863 +
1691683751.5276618-CDS-L-elsbetiae_contig6362:4345..48631691683751.5276618-CDS-L-elsbetiae_contig6362:4345..4863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6362 4346..4863 +
1622816702.5367594-CDS-L-elsbetiae_contig6362:4962..51131622816702.5367594-CDS-L-elsbetiae_contig6362:4962..5113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6362 4963..5113 +
1691683751.5364974-CDS-L-elsbetiae_contig6362:4962..51131691683751.5364974-CDS-L-elsbetiae_contig6362:4962..5113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6362 4963..5113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6362.15024.1

>prot_L-elsbetiae_contig6362.15024.1 ID=prot_L-elsbetiae_contig6362.15024.1|Name=mRNA_L-elsbetiae_contig6362.15024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=433bp
MQEQNEQLSKKLAARPVMAPGLERTLLEAHLRLLLGKLGVTSGAGLGKGG
LAATAPGSGGVSGGEQPHTFRDSHLGRGKPGSTRVCCAPAEGCPKDASPR
RKHGLSSAVRQSSGSSSGSNNSAPNTPCIPLDTHQDRAVFEFISAGGDSS
SSEVVSVRDGGSRPETGRRPGSSRSARSAPECLESGKCLSIATIDTALGE
LRAAFEEEAQGLLEEVADLTDLLEDEAVRKADGERRTRRNLPSACDNDVR
GNNTNISSSCGGGGSGGPIPSSELRRFGKKLEEAVRSREHAAEVTQRLAK
TDKKLLPRNSKRVSVISSSLRSTGGAVIGGKEGVRSKGWAAPPVRGGGAY
ADEIDGKGYRSGRNRPSLKSASGCLRGRAGSDDMAAAAAAAMRQATRQSG
GRGRERGVLASKLRGAVRSSRDQAVDDEKFWN*
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mRNA from alignment at L-elsbetiae_contig6362:2665..5113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6362.15024.1 ID=mRNA_L-elsbetiae_contig6362.15024.1|Name=mRNA_L-elsbetiae_contig6362.15024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2449bp|location=Sequence derived from alignment at L-elsbetiae_contig6362:2665..5113+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGAGCAAAATGAGCAGCTGTCGAAAAAGCTCGCTGCGCGGCCGGT
AATGGCGCCGGGTCTAGAAAGAACTCTTCTTGAAGCTCATCTCCGGCTGC
TGCTCGGAAAACTAGGCGTCACGAGTGGTGCGGGGTTGGGCAAGGGAGGG
TTGGCGGCAACGGCGCCTGGCAGCGGGGGCGTTAGTGGCGGGGAACAACC
GCATACATTTAGAGACAGTCACCTTGGCAGGGGCAAACCAGGCTCTACCA
GAGTGTGCTGTGCTCCCGCCGAAGGGTGCGTTTCGTTTAAAGGGCTGCTT
TGTTGCTTCTACTGCGTACTTGCTGTAGATACGCTGCACCGTCGCGGCCA
GGCGGCTGTCACCCTCGTAGCTCGCACAAGACACTTTGCCGTTCCAAAAT
GGGCTTGAGTGCCACCAGATCGTTCGGCAGACGCACGTCGCCCAACAACC
TTTTTACATCTCCCACACCGTACACCCACCCCTGATCTCCAGGCATCCTC
CGAACTCGCCGTATGTGCTGTTTTGTCAGGGTGCTGCTGCTGTGACCTCC
TATATTTGACTCTTTGGTACGCCATGCCCGGATGCACGTACGTGTGGTTC
ATGACAGCAGGTGTCCGAAAGACGCTTCACCTCGCCGAAAGCATGGCCTA
TCGTCGGCCGTCAGACAAAGCAGCGGCAGCAGCAGTGGCAGCAACAACAG
TGCACCCAACACACCTTGCATACCCCTCGACACCCATCAAGACCGAGCTG
TGTTCGAGTTTATATCGGCCGGTGGTGACAGCAGTAGCAGCGAGGTTGTG
TCGGTGAGAGATGGCGGGTCGAGACCGGAAACGGGAAGAAGACCAGGAAG
CTCTCGGTCAGCAAGGTCGGGTCGTTGATTAGATCACACGCGTAACTAAT
GTGGTAGGAATAGATATGCAAAATCCCGGCCTATTATTTCAATATTTCCC
CTACTTGACGAAGAATTTATCATTTTCCTGTGCCTCGTATGTGTATTACT
TCGAAGCAGCAGTATATGTACTTATAGTCTAGTATATTTAGGGCCGACGA
CATCCCAGCGTCCGATCCCCCCCCCCCCTCTCTTTGCCCCGTTTTACTCT
CTCCTGCGTTATATCGTCACTCGTCCGTCGGCAAAAACAAAAACACTGGC
GCGCCTGCCGCTGCATCGGGAAGCGGAACGCCCTCAACCGCACTGCTCCC
CTCGCATGTGTGTAACATGTATGCGTATTTGTGCACAGGTCTGCCCCCGA
GTGTCTGGAATCGGGGAAATGTCTTTCCATCGCCACGATAGACACCGCTC
TGGGAGAACTTCGCGCCGCCTTTGAAGAAGAGGCCCAGGTAGATGCACAG
TGCTATTTTTATGTACATAAAAATGTAAAAGTAAGTGGGAGGGTAACTAC
ATATTGAGGGTAGGTATTCATGGCAACTCTTTGTCTCCCTCCGTTCGTGT
GCCTCCTAGGTACCATGGTCGTTTCGTGTCTTTTCGTTAGTATGTTTGTG
AAGTGCTGGAAGTTTCCTTCCGACCAAAACGAACTTTCTGAGCACCTACA
TAAAAACATACCTCTACATACAAGTACGTCCGTTCAGAAACGATACACCG
TGTTCCGATCACAGGCACCACCTTTTCTTTGCACGTATTTCCTCCTCAAC
GCCTCCCGTCTCACTTTCCCGCACGTCAAAGGGTCTTCTGGAGGAAGTGG
CTGATCTGACAGACCTCCTCGAAGACGAGGCCGTCCGCAAGGCCGACGGT
GAGCGTCGAACTCGACGGAATCTCCCCTCGGCTTGCGACAACGACGTCCG
AGGCAACAACACCAATATTAGTAGCAGTTGCGGCGGCGGCGGTAGCGGCG
GCCCCATTCCATCTTCCGAGCTCCGGCGCTTCGGCAAGAAGCTCGAGGAG
GCCGTACGATCCCGAGAGCACGCGGCCGAAGTCACCCAGCGATTGGCCAA
AACCGATAAGAAACTGCTTCCGCGGAATAGTAAGAGAGTGTCTGTAATTT
CGAGCTCTCTGAGATCTACGGGCGGGGCGGTGATCGGCGGCAAAGAGGGC
GTTAGAAGTAAAGGTTGGGCGGCCCCGCCAGTCCGTGGCGGCGGTGCATA
TGCCGATGAGATAGATGGGAAAGGTTACCGTTCTGGCCGGAATCGTCCTT
CGTTGAAGTCTGCATCGGGGTGTCTTCGTGGCCGCGCGGGCTCTGATGAG
TTGGAGTTGCGGAGCCACCGTGACCCGAGCAGAGCGGCCAAAACGCTCAC
CGTGCGAGCAGATAGCGGGAGTGATACCGTTGAAGAAGACCTTCAAAGTA
TGGCGGCGGCGGCGGCGGCGGCGATGAGGCAGGCGACACGGCAGAGCGGG
GGCCGCGGGCGGGAGCGCGGGGTGCTGGCGTCGAAGCTACGCGGGGCGGT
GCGGTCGTCACGGGACCAAGCCGTGGACGACGAGAAGTTCTGGAACTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6362:2665..5113+

>mRNA_L-elsbetiae_contig6362.15024.1 ID=mRNA_L-elsbetiae_contig6362.15024.1|Name=mRNA_L-elsbetiae_contig6362.15024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2598bp|location=Sequence derived from alignment at L-elsbetiae_contig6362:2665..5113+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGAGCAAAATGAGCAGCTGTCGAAAAAGCTCGCTGCGCGGCCGGT
AATGGCGCCGGGTCTAGAAAGAACTCTTCTTGAAGCTCATCTCCGGCTGC
TGCTCGGAAAACTAGGCGTCACGAGTGGTGCGGGGTTGGGCAAGGGAGGG
TTGGCGGCAACGGCGCCTGGCAGCGGGGGCGTTAGTGGCGGGGAACAACC
GCATACATTTAGAGACAGTCACCTTGGCAGGGGCAAACCAGGCTCTACCA
GAGTGTGCTGTGCTCCCGCCGAAGGATGCAGGAGCAAAATGAGCAGCTGT
CGAAAAAGCTCGCTGCGCGGCCGGTAATGGCGCCGGGTCTAGAAAGAACT
CTTCTTGAAGCTCATCTCCGGCTGCTGCTCGGAAAACTAGGCGTCACGAG
TGGTGCGGGGTTGGGCAAGGGAGGGTTGGCGGCAACGGCGCCTGGCAGCG
GGGGCGTTAGTGGCGGGGAACAACCGCATACATTTAGAGACAGTCACCTT
GGCAGGGGCAAACCAGGCTCTACCAGAGTGTGCTGTGCTCCCGCCGAAGG
GTGTCCGAAAGACGCTTCACCTCGCCGAAAGCATGGCCTATCGTCGGCCG
TCAGACAAAGCAGCGGCAGCAGCAGTGGCAGCAACAACAGTGCACCCAAC
ACACCTTGCATACCCCTCGACACCCATCAAGACCGAGCTGTGTTCGAGTT
TATATCGGCCGGTGGTGACAGCAGTAGCAGCGAGGTTGTGTCGGTGAGAG
ATGGCGGGTCGAGACCGGAAACGGGAAGAAGACCAGGAAGCTCTCGGTCA
GCAAGGTGTCCGAAAGACGCTTCACCTCGCCGAAAGCATGGCCTATCGTC
GGCCGTCAGACAAAGCAGCGGCAGCAGCAGTGGCAGCAACAACAGTGCAC
CCAACACACCTTGCATACCCCTCGACACCCATCAAGACCGAGCTGTGTTC
GAGTTTATATCGGCCGGTGGTGACAGCAGTAGCAGCGAGGTTGTGTCGGT
GAGAGATGGCGGGTCGAGACCGGAAACGGGAAGAAGACCAGGAAGCTCTC
GGTCAGCAAGGTCTGCCCCCGAGTGTCTGGAATCGGGGAAATGTCTTTCC
ATCGCCACGATAGACACCGCTCTGGGAGAACTTCGCGCCGCCTTTGAAGA
AGAGGCCCAGGTCTGCCCCCGAGTGTCTGGAATCGGGGAAATGTCTTTCC
ATCGCCACGATAGACACCGCTCTGGGAGAACTTCGCGCCGCCTTTGAAGA
AGAGGCCCAGGGTCTTCTGGAGGAAGTGGCTGATCTGACAGACCTCCTCG
AAGACGAGGCCGTCCGCAAGGCCGACGGTGAGCGTCGAACTCGACGGAAT
CTCCCCTCGGCTTGCGACAACGACGTCCGAGGCAACAACACCAATATTAG
TAGCAGTTGCGGCGGCGGCGGTAGCGGCGGCCCCATTCCATCTTCCGAGC
TCCGGCGCTTCGGCAAGAAGCTCGAGGAGGCCGTACGATCCCGAGAGCAC
GCGGCCGAAGTCACCCAGCGATTGGCCAAAACCGATAAGAAACTGCTTCC
GCGGAATAGTAAGAGAGTGTCTGTAATTTCGAGCTCTCTGAGATCTACGG
GCGGGGCGGTGATCGGCGGCAAAGAGGGCGTTAGAAGTAAAGGTTGGGCG
GCCCCGCCAGTCCGTGGCGGCGGTGCATATGCCGATGAGATAGATGGGAA
AGGTTACCGTTCTGGCCGGAATCGTCCTTCGTTGAAGTCTGCATCGGGGT
GTCTTCGTGGCCGCGCGGGCTCTGATGAGGTCTTCTGGAGGAAGTGGCTG
ATCTGACAGACCTCCTCGAAGACGAGGCCGTCCGCAAGGCCGACGGTGAG
CGTCGAACTCGACGGAATCTCCCCTCGGCTTGCGACAACGACGTCCGAGG
CAACAACACCAATATTAGTAGCAGTTGCGGCGGCGGCGGTAGCGGCGGCC
CCATTCCATCTTCCGAGCTCCGGCGCTTCGGCAAGAAGCTCGAGGAGGCC
GTACGATCCCGAGAGCACGCGGCCGAAGTCACCCAGCGATTGGCCAAAAC
CGATAAGAAACTGCTTCCGCGGAATAGTAAGAGAGTGTCTGTAATTTCGA
GCTCTCTGAGATCTACGGGCGGGGCGGTGATCGGCGGCAAAGAGGGCGTT
AGAAGTAAAGGTTGGGCGGCCCCGCCAGTCCGTGGCGGCGGTGCATATGC
CGATGAGATAGATGGGAAAGGTTACCGTTCTGGCCGGAATCGTCCTTCGT
TGAAGTCTGCATCGGGGTGTCTTCGTGGCCGCGCGGGCTCTGATGATATG
GCGGCGGCGGCGGCGGCGGCGATGAGGCAGGCGACACGGCAGAGCGGGGG
CCGCGGGCGGGAGCGCGGGGTGCTGGCGTCGAAGCTACGCGGGGCGGTGC
GGTCGTCACGGGACCAAGCCGTGGACGACGAGAAGTTCTGGAACTAGTAT
GGCGGCGGCGGCGGCGGCGGCGATGAGGCAGGCGACACGGCAGAGCGGGG
GCCGCGGGCGGGAGCGCGGGGTGCTGGCGTCGAAGCTACGCGGGGCGGTG
CGGTCGTCACGGGACCAAGCCGTGGACGACGAGAAGTTCTGGAACTAG
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