mRNA_L-elsbetiae_contig636.15021.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig636.15021.1
Unique NamemRNA_L-elsbetiae_contig636.15021.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig636.15021.1 vs. uniprot
Match: A0A6H5JHJ8_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ8_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 7.250e-48
Identity = 83/107 (77.57%), Postives = 93/107 (86.92%), Query Frame = 1 
Query:  241 APHFLPFYPSIVLDTGVKMTTVPDWLRKQAPVDAAAGKEYVGRLTGKVTLKVKCSSAVRTKLLAAHKVNFIKIQYRPRILMRTWDQDGEFNSSAGQHVPVSRLLDAL 561
            APHFLPFYP+I LDTG K+  VPDWL+KQAP DAA GKEY+GRL GKVTLKV C SAVRTKLLAAHKVNF+KIQ RP +++RTWDQDGEF S AG+HVPV RLLDA+
Sbjct:    7 APHFLPFYPTIELDTGAKVKQVPDWLKKQAPEDAATGKEYIGRLMGKVTLKVACLSAVRTKLLAAHKVNFVKIQSRPCLVVRTWDQDGEFTSRAGEHVPVCRLLDAV 113
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig636.15021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHJ8_9PHAE7.250e-4877.57SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig636contigL-elsbetiae_contig636:13033..15588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size705
Cds size660
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig636.15021.1prot_L-elsbetiae_contig636.15021.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig636 13078..15588 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.815924-UTR-L-elsbetiae_contig636:13032..130771622816701.815924-UTR-L-elsbetiae_contig636:13032..13077Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig636 13033..13077 +
1691683750.9157863-UTR-L-elsbetiae_contig636:13032..130771691683750.9157863-UTR-L-elsbetiae_contig636:13032..13077Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig636 13033..13077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.827814-CDS-L-elsbetiae_contig636:13077..132731622816701.827814-CDS-L-elsbetiae_contig636:13077..13273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig636 13078..13273 +
1691683750.927441-CDS-L-elsbetiae_contig636:13077..132731691683750.927441-CDS-L-elsbetiae_contig636:13077..13273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig636 13078..13273 +
1622816701.8393676-CDS-L-elsbetiae_contig636:14142..142871622816701.8393676-CDS-L-elsbetiae_contig636:14142..14287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig636 14143..14287 +
1691683750.936655-CDS-L-elsbetiae_contig636:14142..142871691683750.936655-CDS-L-elsbetiae_contig636:14142..14287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig636 14143..14287 +
1622816701.8495872-CDS-L-elsbetiae_contig636:14683..147641622816701.8495872-CDS-L-elsbetiae_contig636:14683..14764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig636 14684..14764 +
1691683750.946342-CDS-L-elsbetiae_contig636:14683..147641691683750.946342-CDS-L-elsbetiae_contig636:14683..14764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig636 14684..14764 +
1622816701.8601243-CDS-L-elsbetiae_contig636:15350..155881622816701.8601243-CDS-L-elsbetiae_contig636:15350..15588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig636 15351..15588 +
1691683750.9574268-CDS-L-elsbetiae_contig636:15350..155881691683750.9574268-CDS-L-elsbetiae_contig636:15350..15588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig636 15351..15588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig636.15021.1

>prot_L-elsbetiae_contig636.15021.1 ID=prot_L-elsbetiae_contig636.15021.1|Name=mRNA_L-elsbetiae_contig636.15021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
MSEASTSRRRGVRERRPPPVFSSSPRAAPKKVEKVQVKKARLDEVTAIPR
PSDPTAFVQAAQQAKAPHFLPFYPSIVLDTGVKMTTVPDWLRKQAPVDAA
AGKEYVGRLTGKVTLKVKCSSAVRTKLLAAHKVNFIKIQYRPRILMRTWD
QDGEFNSSAGQHVPVSRLLDALNNDSSSSVSCSIVKAGGSSSPPYSPPSS
PPTPPPTAASGRTRGASAAA
back to top

mRNA from alignment at L-elsbetiae_contig636:13033..15588+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig636.15021.1 ID=mRNA_L-elsbetiae_contig636.15021.1|Name=mRNA_L-elsbetiae_contig636.15021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2556bp|location=Sequence derived from alignment at L-elsbetiae_contig636:13033..15588+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTACCCGTTTCTGCGCGCGATATCGTGATCCCCATTGTTGGCGATGAG
TGAGGCATCGACGAGCCGGAGAAGGGGGGTGCGCGAGCGGCGTCCGCCGC
CAGTCTTCAGCAGCTCTCCGCGAGCCGCTCCGAAAAAAGTAGAGAAGGTC
CAGGTGAAGAAGGCCCGACTCGATGAGGTGACGGCCATCCCGAGGCCGTC
GGATCCAACTGCTTTCGTCCAGGCGGCGCAGCAAGCGAAAGGTGGGTTTG
TTATGATGGTGGTAGGCAGAGAGTACCCCTCCTCTTGCTGACGGTATCCT
TGAACACGTCAACATGGAAACCGTCCCTGTGGTGGGGGAAGTGCGAGAGC
GACTACCCCCACATTGGAATCCTTCCAGCCAGCAAGGCCCCATCCCACCG
CCTCCCCGCGCGGCTGTTCTTGTCTCGGGGAGTGTTTCCATCAGGTTTTA
CATGCATCAGCTGTGCTCCCGAACAGATTGATGAGACCTTGGCTTCCGTG
AGCGCCGTTTCAAAAATTAGGCAAACGGATATCTCCCCGCCGCCAGTATC
ATGATGAGATGAAGTACACAGGTAGACTCGCGGCAAAGCGTTGGCAGGCT
CTCTCTGCATCTGCCTTTCTCTCCAAGTCACTCCATGGATCGGCAACAAC
AATAGCCGGAATAGCAGCGTAATTTTGTGGTTTCCCTTGAGAAACCATGG
GAACCAAATGGCCGAGAGAAAGACATACGCTCGGCGCGAATTCGTATCTC
TCGCGCTCTTCTCAACACGCGAATTCGCCCTCTCCCGCCCTCTCCCACGG
GGGTGGTCTTTGCACCAAGTACACACACGTAAAGTCGAACAACAACCGTC
GCCGGTGCGGAGAGGCACGTGTACTTAAATTATTGCACCTTTCTGCGCAC
GGTGTGTGTACAAAAAGTGTCCTGTGTTTCGCACGCCAGCACTCTTTGTC
TCTCTCACTGATCCTCCCATCTCCTCCCCCCCCCGTTGTTGTCGGACTGC
TCCCGCTTTCCCCACCCGTGCCACTTCCGCCGCGCCCTCCTTCCGTCCCT
TCACGGATTCCCTGCCCAAAACGCAACTGTCGAAAATCAATCGCGCGCAA
CGCGGCGCAGCTCCCCACTTCCTGCCCTTCTACCCGAGCATCGTGCTGGA
CACCGGCGTGAAAATGACGACGGTGCCGGACTGGCTCAGGAAGCAGGCGC
CCGTGGACGCGGCCGCTGGAAAGGAGTACGTGGGGCGGCTCACGGGGAAA
GTGACGTGAGTCGAGTCGAGCCCATCCGGGCGGGGTCGCCTCTGTGTTGC
TCATGCGCTTTCTACTGACTGCTGCTGTGCACGCTGGTGTGCTTTTTTCG
TTGTAAAATAGGTATCTCTTGACACCCGTTTTGAATAAACAGCCGTCAAT
CGCTTGATGCTGCGGATAGGGGAAGGTACCCCCCGGCGGTGGCAGGGGTT
CGGGATTGAGAGTGCGTCGGCTATCTGTCTGTCTGTCTGTCTGCCTGTCT
GTCTGCAGTTACTCGAGACGAGATAGTTTTCTGTTTGGTCTTGTCAGAAA
ATACTCCTCCTTGTTCGAAGTCAGCAACAGATCCCCCACCCACCCGGCCT
TTCTCCCCCGTCTGCCGCCGCCGCCGCCGCCGCCTCTTCCGCCACCTGCA
GCTTGAAGGTGAAGTGCTCGAGCGCGGTACGCACTAAGCTCCTCGCGGCG
CACAAGGTCAACTTCATCAAAATTCAGTACAGGTAAGTGAAGTCAGTCAG
CGCCGGGTGCCCGGTCGCCCCCTTCCCCTTCCCTTCCCTTGCTTTCCCTT
GCTCCTTCATCTTGTTATGTGTGTATGATATATGTGCTGTTTGTACGGTC
CCTTACCAACGACGCGAAGACGCAAATAAACACACACACACACACACACA
CACACACACACACACACACACATACACACGGCGGTTAAGCTGAGCACCTT
ACCGCCTGTGTTTTCGAGACATAATTTTGTGCTTGGTGCCTGCCGTGTGC
GGCGTTTTATCAAAAGTAGGACCGCTCTAGCTACTCCCGAGATTGTGTGT
GTGTGAGTGTGGTCTGTGTGTGTGTGTTCCCGTGCGGTACGCACTCGGTT
TGCTTCCCTTTACCGCCGCTGGTGTGTGCTGGTGCTTTTGACTCACGTGT
GATCCATGCCTGCCTCCCACCCCGCTGCGGCCCCCCCCAGAGACTCAAGG
AGAAGTATATGTATGCCGTAGAACTTGGAAGTAGTCTAATTATGTCGTTC
CGTCCCAACGCACACACACCCACCCACTCATGTGTGAACGTAAATGCGAT
CGTCAAACTGTTGTCCAGGCCGCGCATCTTGATGAGGACGTGGGACCAAG
ACGGGGAGTTCAACAGCTCCGCGGGGCAGCACGTCCCCGTGAGCCGGCTG
CTGGACGCGCTGAACAACGACTCTTCGTCTTCGGTGTCGTGCTCGATCGT
GAAGGCGGGAGGCTCCTCCTCTCCCCCCTATTCTCCCCCTTCCTCCCCCC
CCACGCCGCCACCCACCGCCGCTTCCGGCAGAACGAGAGGTGCCTCTGCC
GCCGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig636:13033..15588+

>mRNA_L-elsbetiae_contig636.15021.1 ID=mRNA_L-elsbetiae_contig636.15021.1|Name=mRNA_L-elsbetiae_contig636.15021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig636:13033..15588+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGAGGCATCGACGAGCCGGAGAAGGGGGGTGCGCGAGCGGCGTCC
GCCGCCAGTCTTCAGCAGCTCTCCGCGAGCCGCTCCGAAAAAAGTAGAGA
AGGTCCAGGTGAAGAAGGCCCGACTCGATGAGGTGACGGCCATCCCGAGG
CCGTCGGATCCAACTGCTTTCGTCCAGGCGGCGCAGCAAGCGAAAGATGA
GTGAGGCATCGACGAGCCGGAGAAGGGGGGTGCGCGAGCGGCGTCCGCCG
CCAGTCTTCAGCAGCTCTCCGCGAGCCGCTCCGAAAAAAGTAGAGAAGGT
CCAGGTGAAGAAGGCCCGACTCGATGAGGTGACGGCCATCCCGAGGCCGT
CGGATCCAACTGCTTTCGTCCAGGCGGCGCAGCAAGCGAAAGCTCCCCAC
TTCCTGCCCTTCTACCCGAGCATCGTGCTGGACACCGGCGTGAAAATGAC
GACGGTGCCGGACTGGCTCAGGAAGCAGGCGCCCGTGGACGCGGCCGCTG
GAAAGGAGTACGTGGGGCGGCTCACGGGGAAAGTGACCTCCCCACTTCCT
GCCCTTCTACCCGAGCATCGTGCTGGACACCGGCGTGAAAATGACGACGG
TGCCGGACTGGCTCAGGAAGCAGGCGCCCGTGGACGCGGCCGCTGGAAAG
GAGTACGTGGGGCGGCTCACGGGGAAAGTGACCTTGAAGGTGAAGTGCTC
GAGCGCGGTACGCACTAAGCTCCTCGCGGCGCACAAGGTCAACTTCATCA
AAATTCAGTACAGCTTGAAGGTGAAGTGCTCGAGCGCGGTACGCACTAAG
CTCCTCGCGGCGCACAAGGTCAACTTCATCAAAATTCAGTACAGGCCGCG
CATCTTGATGAGGACGTGGGACCAAGACGGGGAGTTCAACAGCTCCGCGG
GGCAGCACGTCCCCGTGAGCCGGCTGCTGGACGCGCTGAACAACGACTCT
TCGTCTTCGGTGTCGTGCTCGATCGTGAAGGCGGGAGGCTCCTCCTCTCC
CCCCTATTCTCCCCCTTCCTCCCCCCCCACGCCGCCACCCACCGCCGCTT
CCGGCAGAACGAGAGGTGCCTCTGCCGCCGCCGCCGCGCATCTTGATGAG
GACGTGGGACCAAGACGGGGAGTTCAACAGCTCCGCGGGGCAGCACGTCC
CCGTGAGCCGGCTGCTGGACGCGCTGAACAACGACTCTTCGTCTTCGGTG
TCGTGCTCGATCGTGAAGGCGGGAGGCTCCTCCTCTCCCCCCTATTCTCC
CCCTTCCTCCCCCCCCACGCCGCCACCCACCGCCGCTTCCGGCAGAACGA
GAGGTGCCTCTGCCGCCGCC
back to top