mRNA_L-elsbetiae_contig6359.15017.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6359.15017.1
Unique NamemRNA_L-elsbetiae_contig6359.15017.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6359.15017.1 vs. uniprot
Match: D8LQF7_ECTSI (Calmodulin-dependent protein kinase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQF7_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.340e-24
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    4 CWGSVTQRAKDFVLALLNVDQDTRLTAEQALRHPWLTEAFEKTGGGEPNLAISLSKLKVFSAKRKFRMAIHAMVACQQLHGWASMVE-GVASTPVLA 291
            CW SV+Q A DFVL LL VD DTRLT EQAL+HPWLT+A E+   G   L  +++KL+ F+AKRK R+AI  ++A QQL   AS +E GVA  P+LA
Sbjct:  438 CWRSVSQNAMDFVLDLLRVDPDTRLTTEQALQHPWLTDAVEEAEEGGQELGAAMTKLRTFNAKRKLRVAIRTLIALQQLEVSASSMEVGVARPPLLA 534          
BLAST of mRNA_L-elsbetiae_contig6359.15017.1 vs. uniprot
Match: A0A835YSJ7_9STRA (Phosphorylase kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.060e-13
Identity = 35/81 (43.21%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    7 WGSVTQRAKDFVLALLNVDQDTRLTAEQALRHPWL---TEAFEKTGGGEPNLAISLSKLKVFSAKRKFRMAIHAMVACQQL 240
            WGS++ +AKD +  +L VD   R+TAEQAL+HP+L   +EA + T     N++++L ++++F+A+RK R AIH+++A Q L
Sbjct:  565 WGSISDQAKDLIRRMLTVDPAQRITAEQALQHPYLQIDSEALQTT-----NMSVNLERMRLFNARRKLRSAIHSIIAVQAL 640          
BLAST of mRNA_L-elsbetiae_contig6359.15017.1 vs. uniprot
Match: F0Y1I4_AURAN (Protein kinase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1I4_AURAN)

HSP 1 Score: 66.6 bits (161), Expect = 6.220e-12
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    7 WGSVTQRAKDFVLALLNVDQDTRLTAEQALRHPWLTEAFEKTGGGEPNLAISLSKLKVFSAKRKFRMAIHAMVACQQL 240
            WG V++  KD ++ LL V+   R+TAEQAL HPW+    E   G +  L ++L   K ++AKRKF+ A  A++A ++L
Sbjct:   42 WGGVSKEGKDLIMKLLTVNPSDRITAEQALGHPWIVSDDEALKGSD--LGVNLRAFKRYNAKRKFKSAGKALIAARRL 117          
BLAST of mRNA_L-elsbetiae_contig6359.15017.1 vs. uniprot
Match: A0A6H5JU42_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU42_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.170e-11
Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    7 WGSVTQRAKDFVLALLNVDQDTRLTAEQALRHPWLT-EAFEKTGGGEPNLAISLSKLKVFSAKRKFRMAIHAMVACQQLHGWASMV 261
            W +V+  AKD +  +L +D+D R+TAEQAL HPW+  +A E     + +L  ++ KL++F+A+RKF+ AI +++A Q L   A  V
Sbjct:  291 WSTVSDEAKDLIKKMLTLDKDKRITAEQALEHPWVVGDAAELE---KHDLGANMGKLRLFNARRKFKSAISSVIAAQALLNVAESV 373          
BLAST of mRNA_L-elsbetiae_contig6359.15017.1 vs. uniprot
Match: A0A835YZ60_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ60_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.490e-11
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    7 WGSVTQRAKDFVLALLNVDQDTRLTAEQALRHPWLTEAFEKTGGGEPNLAISLSKLKVFSAKRKFRMAIHAMVACQQLHGWAS 255
            WGS++  AKD +  LL VDQ +RLTA +A+ HPWL  +   T     NL  +L +LK+F+A+RK R AI +++  +++  +A+
Sbjct:  264 WGSISSDAKDLISRLLTVDQHSRLTAREAVSHPWLLTS--DTDLAARNLGKNLEQLKLFNARRKLRAAIKSVLVARRMAHFAN 344          
BLAST of mRNA_L-elsbetiae_contig6359.15017.1 vs. uniprot
Match: A0A835ZCS0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCS0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.520e-11
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    7 WGSVTQRAKDFVLALLNVDQDTRLTAEQALRHPWLTEAFEKTGGGEPNLAISLSKLKVFSAKRKFRMAIHAMVACQQL 240
            WGSV++ AKD +  +L V+   R+TAE+AL HPWL+   E+      NL  +L +LK+F+A+RK + A+ +++  +Q+
Sbjct:  205 WGSVSEEAKDLIKRMLTVNTTQRITAEEALSHPWLSGGRERPDLLANNLDNNLERLKMFNARRKLQGAVRSVIFARQM 282          
BLAST of mRNA_L-elsbetiae_contig6359.15017.1 vs. uniprot
Match: D8LP07_ECTSI (Possible CDPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP07_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.390e-11
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    7 WGSVTQRAKDFVLALLNVDQDTRLTAEQALRHPWLTEAFEKTGGGEPNLAISLSKLKVFSAKRKFRMAIHAMVACQQLHG 246
            W S++  AKD +  LL VD   RLTA QA+ HPWL    +     + NL ++L +L++F+A+RK R AI +++A Q + G
Sbjct:   72 WQSISNEAKDLIRRLLTVDPKKRLTAAQAVTHPWLLS--KDADLLKHNLGVNLEQLRLFNARRKLRAAIKSVLATQMMAG 149          
BLAST of mRNA_L-elsbetiae_contig6359.15017.1 vs. uniprot
Match: A0A1D1YN70_9ARAE (Calcium/calmodulin-dependent protein kinase type I n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YN70_9ARAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.040e-11
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    7 WGSVTQRAKDFVLALLNVDQDTRLTAEQALRHPWLTEAFEKTGGGEPNLAISLSKLKVFSAKRKFRMAI 213
            WG ++  AKDF+  LL +D + RLTA QAL HPWLTE      GG PN  +  +    F+A++ F+ A+
Sbjct:  237 WGGISDIAKDFITRLLTIDPEQRLTAHQALTHPWLTEPLASPVGGRPNADLLNNVRGNFNARKTFKKAV 305          
BLAST of mRNA_L-elsbetiae_contig6359.15017.1 vs. uniprot
Match: A0A7S2XV40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV40_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-10
Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    7 WGSVTQRAKDFVLALLNVDQDTRLTAEQALRHPWLTEAFEKTGGGEPNLAISLSKLKVFSAKRKFRMAIHAMVACQQLHGWASMVEGVAST 279
            W  V++ AKD +  LL VD + R+TA +A++HPW+T A E       NL   L +L+ F+A+RKFR  + A+VA  ++      ++  A+T
Sbjct:  251 WDPVSEEAKDLIRKLLTVDPNKRITAAEAMQHPWVTGADETLAAR--NLDSQLRELRRFNARRKFRSGVKAIVAANRMQAIIGGLKAAANT 339          
BLAST of mRNA_L-elsbetiae_contig6359.15017.1 vs. uniprot
Match: A0A6H5JWR6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.430e-10
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    7 WGSVTQRAKDFVLALLNVDQDTRLTAEQALRHPWLTEAFEKTGGGEPNLAISLSKLKVFSAKRKFRMAIHAMVACQQLHGWASMVEGVAS 276
            W  ++  AKD +  +L VD + RLTA+QAL HP+L        G   N+  +L ++K+F+A+RKF+ AI  ++   +L       EG+AS
Sbjct:   20 WSDISPEAKDLIAKMLTVDPNKRLTADQALEHPYLKIDTTVLEGN--NMDQNLGRMKLFNARRKFKSAIQTVIVADRLR---KFTEGMAS 104          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6359.15017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQF7_ECTSI2.340e-2456.70Calmodulin-dependent protein kinase I n=1 Tax=Ecto... [more]
A0A835YSJ7_9STRA4.060e-1343.21Phosphorylase kinase n=1 Tax=Tribonema minus TaxID... [more]
F0Y1I4_AURAN6.220e-1241.03Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A6H5JU42_9PHAE2.170e-1140.70Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835YZ60_9STRA3.490e-1140.96Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835ZCS0_9STRA3.520e-1139.74Kinase-like domain-containing protein n=1 Tax=Trib... [more]
D8LP07_ECTSI4.390e-1141.25Possible CDPK n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A1D1YN70_9ARAE9.040e-1143.48Calcium/calmodulin-dependent protein kinase type I... [more]
A0A7S2XV40_9STRA1.300e-1037.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5JWR6_9PHAE2.430e-1036.67Protein kinase domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6359contigL-elsbetiae_contig6359:4287..5428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score67.0
Seed ortholog evalue5.7e-09
Seed eggNOG ortholog40483.S8EIX3
Preferred namecmk1
KEGG koko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000166,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007346,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010038,GO:0010389,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010621,GO:0010629,GO:0010646,GO:0010648,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019219,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033554,GO:0034599,GO:0034613,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045786,GO:0045892,GO:0045930,GO:0045934,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050848,GO:0050849,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051253,GO:0051592,GO:0051641,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070727,GO:0070887,GO:0071241,GO:0071248,GO:0071277,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:0106056,GO:0106057,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902531,GO:1902532,GO:1902679,GO:1902749,GO:1902750,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Pkinase-domain-containing protein
EggNOG OGs224MR@155619,38DCI@33154,3H3QR@355688,3NX22@4751,3UYJ0@5204,KOG0032@1,KOG0032@2759
EC2.7.11.17
COG Functional cat.T
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Ec32 ortholog descriptioncalmodulin-dependent protein kinase I
Ec32 orthologEc-10_005480.1
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.7690327-CDS-L-elsbetiae_contig6359:4286..44211622816701.7690327-CDS-L-elsbetiae_contig6359:4286..4421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6359 4287..4421 -
1691683750.8936896-CDS-L-elsbetiae_contig6359:4286..44211691683750.8936896-CDS-L-elsbetiae_contig6359:4286..4421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6359 4287..4421 -
1622816701.780674-CDS-L-elsbetiae_contig6359:5263..54281622816701.780674-CDS-L-elsbetiae_contig6359:5263..5428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6359 5264..5428 -
1691683750.9058251-CDS-L-elsbetiae_contig6359:5263..54281691683750.9058251-CDS-L-elsbetiae_contig6359:5263..5428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6359 5264..5428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6359.15017.1prot_L-elsbetiae_contig6359.15017.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6359 4287..5428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6359.15017.1

>prot_L-elsbetiae_contig6359.15017.1 ID=prot_L-elsbetiae_contig6359.15017.1|Name=mRNA_L-elsbetiae_contig6359.15017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
VCWGSVTQRAKDFVLALLNVDQDTRLTAEQALRHPWLTEAFEKTGGGEPN
LAISLSKLKVFSAKRKFRMAIHAMVACQQLHGWASMVEGVASTPVLARGE
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mRNA from alignment at L-elsbetiae_contig6359:4287..5428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6359.15017.1 ID=mRNA_L-elsbetiae_contig6359.15017.1|Name=mRNA_L-elsbetiae_contig6359.15017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1142bp|location=Sequence derived from alignment at L-elsbetiae_contig6359:4287..5428- (Laminarionema elsbetiae ELsaHSoW15)
GTTTGCTGGGGCTCCGTAACGCAGCGAGCAAAGGATTTTGTGCTGGCCCT CCTGAACGTGGACCAAGACACTCGATTAACGGCAGAGCAGGCGTTGCGGC ATCCCTGGCTGACAGAGGCTTTCGAGAAGACGGGTGGTGGTGAACCCAAT CTTGCGATATCCTTGGTGAGACATAGAACAGGCGGAAGCGATAACATCTA GATCAGTTGGTTGTACGAATCGACCGGTCAATCACAATCGCGGGCGGGTC TCCTCCTGCGCGGGTCTCCTTCTGCGCAGACTACGCCTGCTGTAGTATAC ACCTGACAGTTGTTGGGTTGTTGGTGCCGAGGGGGATAAACCCGTCAAAA TCCCACATTTGGTGTCATGTATCTATCCATATTATTCACGAAAGGGCTTT AATTAACACAGAAAGTACAAACCTTCAGTATCTGGATGGACTTGCGCACA TTACGTATCCAGCACGCCAGCCAGCACACAAAGACAGGCATGCAAGAGGT AGGCACGGTTCCTCAGCCGAGCGCAAGATCGTGTTTTGTCAAATGAGAAA AACCGTTTGTTCGTCTACATTTATCTCTTAACCCAAACATGTTTCAGGTG TCTTTGGGTCTATTGCACTCGCCGAACAGCCTCACTTGTATCATGCGGTG GGTAGTCAGTTGTGTCTACAAGTCGCGACTGACCGTTGTCATTACGCTTG CGCTTCCCCATTTCTTGTCGGAGCTAGCCACTCTTGACCCATCGACAGCC TTCACCCCGCCTGATCATGCCAGCATGGTTTTCGTCGTGGCATCTGCGTG TGTAGGCGCGGCGACTTGGTTTGTGCAGCAAGCCTCCACCACCACAACAT GCCCTACCACAGCACGGTTGGAGTCACTCAGTCCGTGTACAAGGATATCA TCCCCACCCCTCGGCGTACATGATGTTATCCCAACATGGAGCTCAATAAT TCGCACGTTCCTACTTCGACCGTCTTCGGTGCCACCTACAACCCGTACTA CGCGCAGTCCAAGCTGAAGGTCTTCAGCGCGAAGCGGAAATTTCGGATGG CTATTCATGCGATGGTAGCATGTCAGCAACTCCACGGTTGGGCATCGATG GTAGAAGGGGTCGCTTCAACGCCTGTTTTGGCACGAGGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6359:4287..5428-

>mRNA_L-elsbetiae_contig6359.15017.1 ID=mRNA_L-elsbetiae_contig6359.15017.1|Name=mRNA_L-elsbetiae_contig6359.15017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig6359:4287..5428- (Laminarionema elsbetiae ELsaHSoW15)
GTTTGCTGGGGCTCCGTAACGCAGCGAGCAAAGGATTTTGTGCTGGCCCT
CCTGAACGTGGACCAAGACACTCGATTAACGGCAGAGCAGGCGTTGCGGC
ATCCCTGGCTGACAGAGGCTTTCGAGAAGACGGGTGGTGGTGAACCCAAT
CTTGCGATATCCTTGGTTTGCTGGGGCTCCGTAACGCAGCGAGCAAAGGA
TTTTGTGCTGGCCCTCCTGAACGTGGACCAAGACACTCGATTAACGGCAG
AGCAGGCGTTGCGGCATCCCTGGCTGACAGAGGCTTTCGAGAAGACGGGT
GGTGGTGAACCCAATCTTGCGATATCCTTGTCCAAGCTGAAGGTCTTCAG
CGCGAAGCGGAAATTTCGGATGGCTATTCATGCGATGGTAGCATGTCAGC
AACTCCACGGTTGGGCATCGATGGTAGAAGGGGTCGCTTCAACGCCTGTT
TTGGCACGAGGAGAGTCCAAGCTGAAGGTCTTCAGCGCGAAGCGGAAATT
TCGGATGGCTATTCATGCGATGGTAGCATGTCAGCAACTCCACGGTTGGG
CATCGATGGTAGAAGGGGTCGCTTCAACGCCTGTTTTGGCACGAGGAGAG
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