mRNA_L-elsbetiae_contig6351.15009.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6351.15009.1
Unique NamemRNA_L-elsbetiae_contig6351.15009.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6351.15009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6351contigL-elsbetiae_contig6351:10290..10618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.1189618-CDS-L-elsbetiae_contig6351:10289..106161622816701.1189618-CDS-L-elsbetiae_contig6351:10289..10616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6351 10290..10616 +
1691683750.4672704-CDS-L-elsbetiae_contig6351:10289..106161691683750.4672704-CDS-L-elsbetiae_contig6351:10289..10616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6351 10290..10616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6351.15009.1prot_L-elsbetiae_contig6351.15009.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6351 10290..10616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6351.15009.1

>prot_L-elsbetiae_contig6351.15009.1 ID=prot_L-elsbetiae_contig6351.15009.1|Name=mRNA_L-elsbetiae_contig6351.15009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
NAYSHTRYCFTATFVRRLLVSLLSNLCTSYISPPPSYIVRGALTPVVPAS
RLSVSAVLSLTLPVCSVSNLCSCPALSCAQCHTGMFLLCMMWPRLSCVSQ
LSFLNYRAN
back to top

mRNA from alignment at L-elsbetiae_contig6351:10290..10618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6351.15009.1 ID=mRNA_L-elsbetiae_contig6351.15009.1|Name=mRNA_L-elsbetiae_contig6351.15009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=329bp|location=Sequence derived from alignment at L-elsbetiae_contig6351:10290..10618+ (Laminarionema elsbetiae ELsaHSoW15)
AACGCATACAGTCACACACGTTATTGTTTTACAGCAACGTTCGTTCGCAG
GCTTCTTGTCTCTTTGCTATCCAATTTATGTACTTCGTATATTAGTCCAC
CACCCTCCTACATAGTGAGGGGGGCGCTCACCCCCGTCGTGCCCGCTTCA
CGGCTCTCTGTTTCTGCCGTTTTGTCTCTCACCCTCCCAGTGTGCTCCGT
TTCTAACCTTTGTAGCTGTCCTGCGCTTTCCTGCGCTCAGTGTCATACTG
GGATGTTTCTCTTATGTATGATGTGGCCCAGATTGAGCTGCGTTTCTCAG
CTTAGTTTTCTTAATTATCGCGCAAATCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6351:10290..10618+

>mRNA_L-elsbetiae_contig6351.15009.1 ID=mRNA_L-elsbetiae_contig6351.15009.1|Name=mRNA_L-elsbetiae_contig6351.15009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig6351:10290..10618+ (Laminarionema elsbetiae ELsaHSoW15)
AACGCATACAGTCACACACGTTATTGTTTTACAGCAACGTTCGTTCGCAG
GCTTCTTGTCTCTTTGCTATCCAATTTATGTACTTCGTATATTAGTCCAC
CACCCTCCTACATAGTGAGGGGGGCGCTCACCCCCGTCGTGCCCGCTTCA
CGGCTCTCTGTTTCTGCCGTTTTGTCTCTCACCCTCCCAGTGTGCTCCGT
TTCTAACCTTTGTAGCTGTCCTGCGCTTTCCTGCGCTCAGTGTCATACTG
GGATGTTTCTCTTATGTATGATGTGGCCCAGATTGAGCTGCGTTTCTCAG
CTTAGTTTTCTTAATTATCGCGCAAATAACGCATACAGTCACACACGTTA
TTGTTTTACAGCAACGTTCGTTCGCAGGCTTCTTGTCTCTTTGCTATCCA
ATTTATGTACTTCGTATATTAGTCCACCACCCTCCTACATAGTGAGGGGG
GCGCTCACCCCCGTCGTGCCCGCTTCACGGCTCTCTGTTTCTGCCGTTTT
GTCTCTCACCCTCCCAGTGTGCTCCGTTTCTAACCTTTGTAGCTGTCCTG
CGCTTTCCTGCGCTCAGTGTCATACTGGGATGTTTCTCTTATGTATGATG
TGGCCCAGATTGAGCTGCGTTTCTCAGCTTAGTTTTCTTAATTATCGCGC
AAAT
back to top