mRNA_L-elsbetiae_contig6350.15008.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6350.15008.1
Unique NamemRNA_L-elsbetiae_contig6350.15008.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6350.15008.1 vs. uniprot
Match: A0A5C6PHY1_9TELE (Calmodulin-1 n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6PHY1_9TELE)

HSP 1 Score: 152 bits (383), Expect = 5.340e-45
Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    7 PHSPSLLDTSTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 288
            P+ PS+L    +ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:   20 PNRPSVLQQPGLADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 113
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BLAST of mRNA_L-elsbetiae_contig6350.15008.1 vs. uniprot
Match: A0A6I8NT25_ORNAN (Calmodulin 1 n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8NT25_ORNAN)

HSP 1 Score: 154 bits (389), Expect = 8.560e-45
Identity = 82/92 (89.13%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:   13 SPSLLDTSTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 288
            SPS L T TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:  112 SPSPLFTPTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 203
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BLAST of mRNA_L-elsbetiae_contig6350.15008.1 vs. uniprot
Match: A0A1Q3FVD0_CULTA (Putative calmodulin (Fragment) n=1 Tax=Culex tarsalis TaxID=7177 RepID=A0A1Q3FVD0_CULTA)

HSP 1 Score: 150 bits (378), Expect = 1.530e-44
Identity = 78/87 (89.66%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:   28 DTSTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 288
            +TS MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:    4 NTSKMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 90
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BLAST of mRNA_L-elsbetiae_contig6350.15008.1 vs. uniprot
Match: A0A2S4UJV8_9BASI (Calmodulin n=3 Tax=Pucciniales TaxID=5258 RepID=A0A2S4UJV8_9BASI)

HSP 1 Score: 150 bits (380), Expect = 1.820e-44
Identity = 78/91 (85.71%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:   16 PSLLDTSTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 288
            P  L+T+ MADQLTEEQI+EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:   29 PLQLETTQMADQLTEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELGDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 119
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BLAST of mRNA_L-elsbetiae_contig6350.15008.1 vs. uniprot
Match: A0A2D4FT12_MICCO (Calglandulin (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4FT12_MICCO)

HSP 1 Score: 149 bits (375), Expect = 2.030e-44
Identity = 77/84 (91.67%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:   37 TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 288
            TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:   25 TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 108
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BLAST of mRNA_L-elsbetiae_contig6350.15008.1 vs. uniprot
Match: A0A834E3F8_9CHIR (Calmodulin 2 n=1 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A834E3F8_9CHIR)

HSP 1 Score: 150 bits (378), Expect = 2.980e-44
Identity = 80/96 (83.33%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 HSPHSPSLLDTSTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 288
            H PHSP        ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:   24 HHPHSP-------QADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 112
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BLAST of mRNA_L-elsbetiae_contig6350.15008.1 vs. uniprot
Match: CALM_SACJA (Calmodulin n=28 Tax=Eukaryota TaxID=2759 RepID=CALM_SACJA)

HSP 1 Score: 149 bits (375), Expect = 3.530e-44
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:   40 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 288
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
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BLAST of mRNA_L-elsbetiae_contig6350.15008.1 vs. uniprot
Match: A0A3Q3JYR6_MONAL (Calmodulin-alpha-like n=2 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3JYR6_MONAL)

HSP 1 Score: 149 bits (375), Expect = 4.240e-44
Identity = 77/89 (86.52%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:   22 LLDTSTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 288
            + D +T ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:    1 MADENTKADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 89
[Close]
BLAST of mRNA_L-elsbetiae_contig6350.15008.1 vs. uniprot
Match: A0A6I9Y550_9SAUR (calmodulin-like n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9Y550_9SAUR)

HSP 1 Score: 149 bits (375), Expect = 4.370e-44
Identity = 77/84 (91.67%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:   37 TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 288
            TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:    7 TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 90
[Close]
BLAST of mRNA_L-elsbetiae_contig6350.15008.1 vs. uniprot
Match: L8IZ76_9CETA (Uncharacterized protein (Fragment) n=2 Tax=Bos mutus TaxID=72004 RepID=L8IZ76_9CETA)

HSP 1 Score: 149 bits (375), Expect = 4.940e-44
Identity = 77/84 (91.67%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:   37 TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 288
            TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:   20 TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 103
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6350.15008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C6PHY1_9TELE5.340e-4584.04Calmodulin-1 n=1 Tax=Takifugu flavidus TaxID=43368... [more]
A0A6I8NT25_ORNAN8.560e-4589.13Calmodulin 1 n=1 Tax=Ornithorhynchus anatinus TaxI... [more]
A0A1Q3FVD0_CULTA1.530e-4489.66Putative calmodulin (Fragment) n=1 Tax=Culex tarsa... [more]
A0A2S4UJV8_9BASI1.820e-4485.71Calmodulin n=3 Tax=Pucciniales TaxID=5258 RepID=A0... [more]
A0A2D4FT12_MICCO2.030e-4491.67Calglandulin (Fragment) n=1 Tax=Micrurus corallinu... [more]
A0A834E3F8_9CHIR2.980e-4483.33Calmodulin 2 n=1 Tax=Phyllostomus discolor TaxID=8... [more]
CALM_SACJA3.530e-4492.77Calmodulin n=28 Tax=Eukaryota TaxID=2759 RepID=CAL... [more]
A0A3Q3JYR6_MONAL4.240e-4486.52Calmodulin-alpha-like n=2 Tax=Monopterus albus Tax... [more]
A0A6I9Y550_9SAUR4.370e-4491.67calmodulin-like n=1 Tax=Thamnophis sirtalis TaxID=... [more]
L8IZ76_9CETA4.940e-4491.67Uncharacterized protein (Fragment) n=2 Tax=Bos mut... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6350contigL-elsbetiae_contig6350:8679..8966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue3.7e-34
Seed eggNOG ortholog2880.D7G3B7
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.0845265-CDS-L-elsbetiae_contig6350:8678..89661622816701.0845265-CDS-L-elsbetiae_contig6350:8678..8966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6350 8679..8966 +
1691683750.454866-CDS-L-elsbetiae_contig6350:8678..89661691683750.454866-CDS-L-elsbetiae_contig6350:8678..8966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6350 8679..8966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6350.15008.1prot_L-elsbetiae_contig6350.15008.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6350 8679..8966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6350.15008.1

>prot_L-elsbetiae_contig6350.15008.1 ID=prot_L-elsbetiae_contig6350.15008.1|Name=mRNA_L-elsbetiae_contig6350.15008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
HSPHSPSLLDTSTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVM
RSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSE
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mRNA from alignment at L-elsbetiae_contig6350:8679..8966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6350.15008.1 ID=mRNA_L-elsbetiae_contig6350.15008.1|Name=mRNA_L-elsbetiae_contig6350.15008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig6350:8679..8966+ (Laminarionema elsbetiae ELsaHSoW15)
CACTCCCCTCACTCTCCCTCTCTACTAGACACAAGCACCATGGCGGACCA
ACTGACCGAGGAGCAAATCGCCGAGTTCAAGGAGGCCTTCAGCCTTTTCG
ACAAGGACGGCGACGGCACCATCACCACCAAGGAGCTCGGGACGGTCATG
CGATCGCTGGGGCAAAACCCTACTGAGGCCGAGCTCGCGGACATGATCAA
CGAGGTGGACGCGGATGGAAACGGAACCATCGACTTCCCTGAGTTCCTGA
CCATGATGGCAAGGAAAATGAAGGACACCGACTCTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6350:8679..8966+

>mRNA_L-elsbetiae_contig6350.15008.1 ID=mRNA_L-elsbetiae_contig6350.15008.1|Name=mRNA_L-elsbetiae_contig6350.15008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig6350:8679..8966+ (Laminarionema elsbetiae ELsaHSoW15)
CACTCCCCTCACTCTCCCTCTCTACTAGACACAAGCACCATGGCGGACCA
ACTGACCGAGGAGCAAATCGCCGAGTTCAAGGAGGCCTTCAGCCTTTTCG
ACAAGGACGGCGACGGCACCATCACCACCAAGGAGCTCGGGACGGTCATG
CGATCGCTGGGGCAAAACCCTACTGAGGCCGAGCTCGCGGACATGATCAA
CGAGGTGGACGCGGATGGAAACGGAACCATCGACTTCCCTGAGTTCCTGA
CCATGATGGCAAGGAAAATGAAGGACACCGACTCTGAGCACTCCCCTCAC
TCTCCCTCTCTACTAGACACAAGCACCATGGCGGACCAACTGACCGAGGA
GCAAATCGCCGAGTTCAAGGAGGCCTTCAGCCTTTTCGACAAGGACGGCG
ACGGCACCATCACCACCAAGGAGCTCGGGACGGTCATGCGATCGCTGGGG
CAAAACCCTACTGAGGCCGAGCTCGCGGACATGATCAACGAGGTGGACGC
GGATGGAAACGGAACCATCGACTTCCCTGAGTTCCTGACCATGATGGCAA
GGAAAATGAAGGACACCGACTCTGAG
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